Transcript — View — Lotus Base

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LotjaGi3g1v0555200.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0555200
Transcript ID	LotjaGi3g1v0555200.2
Related isoforms 4	LotjaGi3g1v0555200.1 LotjaGi3g1v0555200.3 LotjaGi3g1v0555200.4 LotjaGi3g1v0555200.5
Lotus japonicus genome version	Gifu v1.2
Description	Hexosyltransferase; TAIR: AT1G33430.1 Galactosyltransferase family protein; Swiss-Prot: sp\|Q9C809\|B3GT8_ARATH Probable beta-1,3-galactosyltransferase 8; TrEMBL-Plants: tr\|A0A151TP28\|A0A151TP28_CAJCA Hexosyltransferase; Found in the gene: LotjaGi3g1v0555200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:97279499..97282773) extracted from Lotus japonicus Gifu genome v1.2.

GTATATATTTGTGAAACAGGAAATCAACTGAAGGAACTAGAGAAAGAGAAGGGCATTGTTGTAAGGTTCATGATCGGACA TAGCACCACGCCAGGCAGCATTCTTGATAAGGCAATTGATGCAGAAGAGGCAGAACACAAAGACTTCCTGAGGTTAGACC ATGTTGAGGGCTACCATGAGCTATCTGCCAAGACACGCCTCTATTTCTCCACAGTTATTTCTATGTGGGATGCTGAGTTC TATGTTAAGGTTGACGATGACATCCATCTAAATCTAGGTAGGTGTTTTCAATCTTATGTAATTTGCTGAGAATTTTTCAC TTCTTCTCTTTCTTTCTTTCTTAAAATTTTGCTTGTTAAATTAAGTTAACTTGCTGATAACTACTCTTTGAGCTTACTTG ATAATTAACACTAAAAATCACATCATTCCTTTCTTTAAAATGCAGGTGTGCTAGTGAGTACACTTGCCAAGTACCGATCA AGACCCAGGGTTTATATTGGTTGCATGAAATCTGGTCCAGTTCTATATCAAAAGTGAGTTTTTCACACACACATTTCATA GAGTGATTGCTATTAATTTATGCAAGGATATTTATGTGAAGTATCTCCTAATTTGTGTGGCAGAGGAGTGAAATATCATG AGGCTGAGCACTGGAAGTTTGGAGAAGAAGGGAACAAGTATTTCAGGCATGCCACTGGACAACTATATGCCATCTCCAAG GATCTTGCTACCTATATATCCATCAATTGGTGATTTCATCCTCCTTTCCCATAGTTCAATAATTCAATTAATGAATTAAA AATAGGAATTTTTCAGAAATTCATTAAAAATATATGTTTTAACACCAAAAAGTAGTCTTCACTCTTCTACCCACCATTAA TAAAAATAGAAAGGTACAAGGGTTAAACCTGAAAACCGTCCTTAAACTTTAAGCGAGATTTGATTTCCGTCCCTCGCCGG AAAATCTTCCTAGCGCCACCCTCAGATTACCTTTTTTGTTTGGAAACCGTCCTTGCCGTTAAAAACCTCCGGCCGCCGTG TCTAGGTGTCCGTTTTGGACCTGCCACGTCATTTCATTAAATGACGTGTAATTTTTTTTTAAATAAAATAAAAACTAAAA ATTTTAATTTTAATTAACTCCTCCAATTCTTTTCTAATTAAAACTAACCCCATAATCTTCTTCACCTTCCTCTAATTCTT TTCTAATTAAAACTAACCCCATAATCTTCTTCACCTTCTTCAAATCTTCATCATATTCCAGAATCATCTTCACCTCAATC TTCAATTCTTCATCATCATTTTTCCAACACCTTCCCCCACCCACCACACCCACCACCACGCCTCCAACCTTACTCCCACA GCCCCAACCTCATCTTCCCCCACCCACCAAAGTTGCAGGATCAAATCAAGTTCAACAAAAAACTGCAAAAAAAATCAAAA CTAATTTTTTTTGTCAGCAAAAGTGAAATTGAATTAAACGGGGAGTACTTGGGGGTACTCCAAACCCATTACAATTTACA AAGACCAAACAGAAAAGGAAAACTACAAGAGCTGGTTCCCACACTTGGATAAACACTGTTTCAAAATACAAAAACTACAA CCTTCAAGCAATTACAAACACAGGACCCATTCGCAACACAAAGAATTAAGACAGGGTGATAAGACTTAGTCTTTAAATAG ACAAACAACACTTCTTCAATTTCATCAAGATAACACTCCACGGCCTTTATCCAAATTCCCACTTCAGCAGCAAATTAAGC CACAACCAGAGATTCTGATATGAATTTGCTGCAAAAGAATTGAACCTGTAATTGAAGAAAAAGAGGAGAAATTATCACTT TTTCAATTGAATTTGAGGGAAGAGAATCAAAAGCATCTTACAATTTGGACGGAGGAGAGAAGAAGCAATGGAATTGGGGC AGTGTTCGATCCCCAACCTCATCTTCAACACCCACAGCCACCGCCTCCAACCTAACCCACCACCCCCAACCTCACCCATA ATCTGATCCCCAGGATGCAAAAGACCAGACCCATACTGCTATTGTTGTTGTTCCTAGTGGCGGTTTCACTGTTGAATCCA GATCTGAGTGACGCCAGACAAGGACGGAGGCGCGGTTGCTGCAAGAAGGGCGACCAAGGGCGGCGATGCCAGAGTGAGGA GTGGCGACGCTTGGGGTCGAGCGCGGGGTGGATACAAGCAAGGACCAGTGGCGGCGCTGTGGTTACCAGAGGCGCGTTGG GCTCGCGAATAAGGCAAGCGGCCGGCGGCCGGAGGAGCGGTGCACAGGGGTGCGTCGCGGACGTGGTGGGCAGCGGCTGG AGGATCTGTGGTTGTGTTGTGATGTTGAAGTTGTTCAACATAGCATTATTTCACTCCCAAAGAGTTTGAAGAAGGAGAAG TAAAAACTGAATTTTTTTTTTTTGAAACTGCTTATATTACTGATTGATTTTTAATTTTTTGATTAGTTCATTATTAGTTT AGGGGGCTTAATTAGTTGATTATTAGTTTAGGGGGCTTAATTAGAAATTTAAAAAAATTATTTTTAATTTTTTTATTTTA TTTAAATGACACGTCATTTAATGAAATGACGTGGCATGGCCACATAGGACGGTTGGCACGGTGACCGGAGGTAAATCGGC GGCAAGGACGGTTTTCAAACAAAAAATGTAGTTTGAGGGTGACGCTAGGAAGATTTTCCGGCGAAGGACGGAAATCAAAT CTCACTTAAAGTTCAGGGATGGTTTTCAGGTTTAACCCAAGGTACAAATATGCAATCTGCAATGTAGGCCTTAAAGAAAA ATAATAATAAAGGAAAAGCATTAATAAATTTTTGGGTCACTAGTAATTTTTTTGGGCTCATGGGTATGAAATACAACTTT TCATTACAGGCCCATACTACACAAATATGCAAATGAAGATGTGTCTTTGGGGTCATGGTTATTGGGCCTAGAAGTTGAAC ATGTAGATGAACGCTCTATGTGTTGCGGAACACCTCCAGGTAAGCCAATCTTTTTTTTTTTGAAACTCTTGTTTCTTTAT TCATGTACATATTTTGTTGTTAACAAATCAGAATTAGTTTAATAAAATGTCCTAATTTTTTGTTTGTTGTTTGGGGATGG ATATAGATTGTGATTGGAAGGCAAGGTCAGGAAATATGTGTGCGGCTTCTTTTGATTGGTCATGCAGTGGTATCTGTAAA TCCGTGGAAAGAATGAAGGACATTCACAAAGCTTGTGGGGAGGGAGATGGAGCTGTTTGGAATGTTGAACTCTAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0555200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCGGACATAGCACCACGCCAGGCAGCATTCTTGATAAGGCAATTGATGCAGAAGAGGCAGAACACAAAGACTTCCT GAGGTTAGACCATGTTGAGGGCTACCATGAGCTATCTGCCAAGACACGCCTCTATTTCTCCACAGTTATTTCTATGTGGG ATGCTGAGTTCTATGTTAAGGTTGACGATGACATCCATCTAAATCTAGGTGTGCTAGTGAGTACACTTGCCAAGTACCGA TCAAGACCCAGGGTTTATATTGGTTGCATGAAATCTGGTCCAGTTCTATATCAAAAAGGAGTGAAATATCATGAGGCTGA GCACTGGAAGTTTGGAGAAGAAGGGAACAAGTATTTCAGGCATGCCACTGGACAACTATATGCCATCTCCAAGGATCTTG CTACCTATATATCCATCAATTGGCCCATACTACACAAATATGCAAATGAAGATGTGTCTTTGGGGTCATGGTTATTGGGC CTAGAAGTTGAACATGTAGATGAACGCTCTATGTGTTGCGGAACACCTCCAGATTGTGATTGGAAGGCAAGGTCAGGAAA TATGTGTGCGGCTTCTTTTGATTGGTCATGCAGTGGTATCTGTAAATCCGTGGAAAGAATGAAGGACATTCACAAAGCTT GTGGGGAGGGAGATGGAGCTGTTTGGAATGTTGAACTCTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0555200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIGHSTTPGSILDKAIDAEEAEHKDFLRLDHVEGYHELSAKTRLYFSTVISMWDAEFYVKVDDDIHLNLGVLVSTLAKYR SRPRVYIGCMKSGPVLYQKGVKYHEAEHWKFGEEGNKYFRHATGQLYAISKDLATYISINWPILHKYANEDVSLGSWLLG LEVEHVDERSMCCGTPPDCDWKARSGNMCAASFDWSCSGICKSVERMKDIHKACGEGDGAVWNVEL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11214:SF275 View details on PTHR11214:SF275 Search for proteins/transripts with this domain View external data on PTHR11214:SF275	1	218	218	6.7E-136	–
Pfam	PF01762 View details on PF01762 Search for proteins/transripts with this domain View external data on PF01762	1	167	167	5.8E-38	IPR002659 Show description in modal box View details on IPR002659 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR11214 View details on PTHR11214 Search for proteins/transripts with this domain View external data on PTHR11214	1	218	218	6.7E-136	IPR002659 Show description in modal box View details on IPR002659 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.550.50 View details on G3DSA:3.90.550.50 Search for proteins/transripts with this domain View external data on G3DSA:3.90.550.50	10	155	146	1.5E-7	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006486 View details of GO:0006486 AmiGO InterPro QuickGO	Biological process	Protein glycosylation	A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.	Subterm of View details of GO:0006464 View details of GO:0043413 Part of View details of GO:0009101
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of View details of GO:0005575

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0555200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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