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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0000300 |
Transcript ID | LotjaGi4g1v0000300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ankyrin repeat protein skip35; TAIR: AT3G59910.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9M1Y3|SKI35_ARATH Ankyrin repeat protein SKIP35; TrEMBL-Plants: tr|A0A151SB59|A0A151SB59_CAJCA F-box/ankyrin repeat protein SKIP35; Found in the gene: LotjaGi4g1v0000300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81523..85746) extracted from Lotus japonicus Gifu genome v1.2.
ATAAACAGAAGTTTAAAATAGGATATGATACATCTATATTTAATTATTTATTTAGCGTGTGAAATGAAAGTCTCGAGGAA GCATAACAGGGCAGGCAGTGGGTTTTCATTCTCCCTTTCATTTCTCTCTCGATCAATCAGGTTTTCTACCTATCTATGTC TATCTCTTTCTTCCTTGTTAGGATTTACTTTCCAACTGTTTCTTCTTATTCTCCTTTCCAAACCGATTCAAATTCGCTGT CAATTTATATTTTAAAAAGATTATACGCGATGCGCAATTCTGTTAAATATGTATAGTATCTTGAGACTGTTTTTCTGATT CTCCTCGTATAACTGTGTTCCATTGGGATTTCTTATAGGGTTTATGTGTGTCGTTGGTTTTGGGTTTGGCGTTAATCGGT TAAATTTTGCACTCGTTTTGATCGGAAAATCTGGATCCCTGTAATGCTTTATATTTTGTTCCTATTTAGCATATACATGT CTATCTCGATTCTCAGTAAAATGGAATCGTGCGAGCCAAAATTTATTTTCAGCATTCAATATTTGCTACCGGTGTTTAGG GCTTGTGATTTCGTATGTGAGTTTTCAGATGGAATTACGGAGCTAGAAGGCCATTTCTTTAATTGTTTTCGTTGAGGATT GAGAGCTGTTGGGAGCATTTTTTTGAAGAAATCCAACATTATATCTGAAAACAAGCGATCTATTAATTCTGATTTTCTAC CTAGTATTTGCTTTTCATGAATTTGAAATCAGAGCCTAGAGTTCTTCTATTCAGTATGGTTTATCTCTCTAGTGCTTTGA AGAATGGCTGTCAGCTTCATCAGACTTGATAAAGATAAAGAGGGCAGAGGAGGCGAGAAGATACAAGAGGATATGGCTTC TTTCTAGGGAAGTAATGATTTCTTTGAAATGGATGAAACAGAACTGCAAAATCCCTTATTTCTGGATATTAAATCTGAAG ATGACAAAATAGAATTCCAAAGAGTTGAAAATCAAAGTTTTGCACCAGAGAAAGGAGAAGGCAGCGGTGTAGTTTTCTCT AGAGAAGCACCACTTATGGGGAAAGAATCAAGAATGTCCACTCCTTACTGTTGCAATGCCAAGAAGCTCAAATCCAGGGC CGTTTCAATAGATTGTGAGTTTGGAAATAATGAGAAAACAGTGGTGGAGAAGAAACTATGTAGGCAAGACAGAATTGAGT TGGGTCGGTTGTTTCAGGATGCAGTGAGTTCCCATAACTGGGAACTTGCTGAAAGTTTGATTTTGGTTGCTGATCCACAA ACCCTTAATGATGCCTTGTGTATAACGCTGGATTCCATCTGGTTCTTGACCACAGAGCTAGAGCTCACTGGGATAACAGG ATTTATCAGGAAGATCATTGCAAATGGTGCTTATGACTTCACAAGAGCTGCCCTGAGGACTTCATTCCTTGCTTCATGTG TCTCTGCTTGCCAAAGCAGAACAATGAGTCTTGCTGATACGGTTGCTGTAATGGCTCAAAGGTACGAGTTGTCCATATCT GTCATATTTTTTTGTAAACAATGTTTGGGAATAAGCACTTCAACTGCTGTACGATTTATATTTTAATCTTGATTATTCAA GCAAGGCTGAATTCAAAAAATTTCTTCTAGTTCTAAGCTATTAGCTTGTCTATGATTCTATAAGATGTGATATAGGAATG TGTTTTTTATGTTACATGGTAGAGGGGTTTGGATTATGTTGAAACTGTACTGTTTCCGCAATTCCGCTAGAATTTCTGCA TATATTGTGACTGGGTAACTGCTTCTCCGCTTTTTGCTAGGTTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAAGTC TTGAAGGCAGAAGCTGGGGCTAAAGTTCAAAAGTTTACTGAATGGGCTTTAAAATGTATAGGCATCCATTCACGACTTCA GAATGAAAGGGATAATGTGATACACAACTCAGCTGTTGAGACTCAGCTCCGGTTATCTGCGTTTAAGACATTCCTTGATC TTGCTGGCAACTGTCTTACAGGGAAGGACTTCAGTGAGGCCTTTGATGCTGCTTGCTTTCCACTTACTCTTTTCTCAAGC TCATTTGATCCAGGTTGGGCATTTGGGGTGTCAGCTACTGTAATCCAAGGGTTGCTAGGCATGTTAGTAGAGGGGGGTGC AGACAATGTCAATCAGTGTTTCTTGGAGGCTTCACGTTTTGGCAGTACAGAACTTGTACGCATACTATTACAGGTAATCT GGCTTTGATCTTTTACTTTTCATTCTTTTCTTTCTCAATCCATCAGTTAATGTTTCTCCAGTCCTTTTAATGGCATTAGC CAACTTCTTTTGTTATGATTTGTTTAAAGCAGCTCTTTTCCATGATGGCTGGAGTCATTTTAATTAAAATGCTGGTGCAT TTACCATTTAGTAGCAGTCTGACTATTATTTGGTATCATATCAAAGGATCGTAGAGATATGTTATTTTTTTAATGTTGAT GACTTGATGTTATTTTATAAGTAGGTAACCTTCCTATTGCATATATTGGAAGGATTTGGAGGTGAGAGGTTTTGGCATTA TCACTATCTTTATATATTCATGTGAAGTGATGTAGTGAATTACTAATTTTAAGTGTTTTCTAATGCAAAGTCTGCTGAAA CTTTTTGACTTATGTTTGTGTGGCATGTTGGGAATCTAATTAATGCAGATAGCACAAAGAAATAGCTTGGATGTTGATGT TGACTTGGCGTTGGGCTTTGCCTCCCATTATTGCAAGATAGGCACTATGGAGTGCTTGGTGGAAGAGGGAAATGCCATAG CTTTTTTGGGCCCTTTAATGAGAGCTGCCGAGAGGGGCTGCATGCAAGTTGTTGAGTGGTTTGTGCAGAGGGGTTGCCGA GACATGGAGCTCTGTCTTGCCCTTACAGCAGCCACTTCTAGCTGCCAAGTTCACATTGCTGCTTATCTTCTTCCACATGT ACCTCAGCAGGTCCTTGGAGCGCTTAGTGTTGAAATTCTCAAGGCTGCTGGTGAACGCAGTGGTGGCTCTCTTGATGGTG TCGCATTTCTCCTCCAATCTGACTTCTTAGGTGATCCTGCAGCTACTTATGCTGTTGCAGATATTATTGCTAAATCCGAG GACGAGGCTGTTGCTCCAGAGCTGAAAACTTTTCTAAGGGATCACTGGTCAGAAGGAGCTTATATGGAGGGGCTAAGGTT AGGACAAGAACATTACATGAATCTTGTGAGGATCATTAAATGGGGCGAGTCTCCTATTTGCTTAAGAGATCTTCCGGCGC CACTGACAGTGGCAATTGCTTACCTCCCACTTTATAGGGAGTGTGTCAAGGCGGGGGGTTGCTTGTTTTCACAAAGGCTT AGGGGACAACTGGTTGAAGCCGCAAGAAGGCTTGGGGATAGAGTCTTTGATGAAGTGACCCATGGTAGAGAACTAGTGGT GTTTCTGGAGAATCATCTTCCTAACTTTTTGCTCCATCCCCCTCGCACTGCTTAGCTAGATTCAGTTACCATTTTTATGT GTCAAGGCGGGGGGGGGGGGTCAGGAGGCACTTTGCAGGATTTAAACCTATTAATTATTTGGGTAAGTTGCACTTGTTCT GCTCTGTATTTTATAAATCATCTTACATTTAAACATGAAAACAGAATGTCATTTCAAACGAATCTTGAGTCAGGGTGAAC AACAGTAAACAAGCATTTTAGGGGTATTTTGTTCTCTAACACTTTTTTTTTTGTTAAAGTTCTCTAACACTTTTGTCGAT GTTTTTCATTCCAACACAATTTAACCTATTGTTAAGATCATCAAGTCTTATTCCATTATATTTAAGCATTCAAAACAGAA AATTGATTACAATTCATGGATTGAGAAATGACAACGAAAAGACAACATTTTTTCATGCATGTGAATGTTTGTCCATTTCT AATCTTCAAACATCATTGCAGTTAGGGGTGGGAATAGGCCAGGCCGTTCGTAGGTGCCTATGGTCTAGCCTACCACAGGC ATAGGCCAAATTGGTAAATAGGCAAGGCTTATGAAAAGCCTATTTAGTTAAAAAGGTTAGGCTCAGGCTATTCAAAAAGC CTTTTAAGCCTTATAGGCTAGCTTATTTAAGTAAAAATGATTAGTATTTTTATGGTACATTGTAAATATGATTAGTATAA ATATATTTTGCCATTGATGATGTCTATATATTAGAAATTTATCATAATATCTTGATATTATTAC
CDS sequence (LotjaGi4g1v0000300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAAACAGAACTGCAAAATCCCTTATTTCTGGATATTAAATCTGAAGATGACAAAATAGAATTCCAAAGAGTTGA AAATCAAAGTTTTGCACCAGAGAAAGGAGAAGGCAGCGGTGTAGTTTTCTCTAGAGAAGCACCACTTATGGGGAAAGAAT CAAGAATGTCCACTCCTTACTGTTGCAATGCCAAGAAGCTCAAATCCAGGGCCGTTTCAATAGATTGTGAGTTTGGAAAT AATGAGAAAACAGTGGTGGAGAAGAAACTATGTAGGCAAGACAGAATTGAGTTGGGTCGGTTGTTTCAGGATGCAGTGAG TTCCCATAACTGGGAACTTGCTGAAAGTTTGATTTTGGTTGCTGATCCACAAACCCTTAATGATGCCTTGTGTATAACGC TGGATTCCATCTGGTTCTTGACCACAGAGCTAGAGCTCACTGGGATAACAGGATTTATCAGGAAGATCATTGCAAATGGT GCTTATGACTTCACAAGAGCTGCCCTGAGGACTTCATTCCTTGCTTCATGTGTCTCTGCTTGCCAAAGCAGAACAATGAG TCTTGCTGATACGGTTGCTGTAATGGCTCAAAGGTTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAAGTCTTGAAGG CAGAAGCTGGGGCTAAAGTTCAAAAGTTTACTGAATGGGCTTTAAAATGTATAGGCATCCATTCACGACTTCAGAATGAA AGGGATAATGTGATACACAACTCAGCTGTTGAGACTCAGCTCCGGTTATCTGCGTTTAAGACATTCCTTGATCTTGCTGG CAACTGTCTTACAGGGAAGGACTTCAGTGAGGCCTTTGATGCTGCTTGCTTTCCACTTACTCTTTTCTCAAGCTCATTTG ATCCAGGTTGGGCATTTGGGGTGTCAGCTACTGTAATCCAAGGGTTGCTAGGCATGTTAGTAGAGGGGGGTGCAGACAAT GTCAATCAGTGTTTCTTGGAGGCTTCACGTTTTGGCAGTACAGAACTTGTACGCATACTATTACAGATAGCACAAAGAAA TAGCTTGGATGTTGATGTTGACTTGGCGTTGGGCTTTGCCTCCCATTATTGCAAGATAGGCACTATGGAGTGCTTGGTGG AAGAGGGAAATGCCATAGCTTTTTTGGGCCCTTTAATGAGAGCTGCCGAGAGGGGCTGCATGCAAGTTGTTGAGTGGTTT GTGCAGAGGGGTTGCCGAGACATGGAGCTCTGTCTTGCCCTTACAGCAGCCACTTCTAGCTGCCAAGTTCACATTGCTGC TTATCTTCTTCCACATGTACCTCAGCAGGTCCTTGGAGCGCTTAGTGTTGAAATTCTCAAGGCTGCTGGTGAACGCAGTG GTGGCTCTCTTGATGGTGTCGCATTTCTCCTCCAATCTGACTTCTTAGGTGATCCTGCAGCTACTTATGCTGTTGCAGAT ATTATTGCTAAATCCGAGGACGAGGCTGTTGCTCCAGAGCTGAAAACTTTTCTAAGGGATCACTGGTCAGAAGGAGCTTA TATGGAGGGGCTAAGGTTAGGACAAGAACATTACATGAATCTTGTGAGGATCATTAAATGGGGCGAGTCTCCTATTTGCT TAAGAGATCTTCCGGCGCCACTGACAGTGGCAATTGCTTACCTCCCACTTTATAGGGAGTGTGTCAAGGCGGGGGGTTGC TTGTTTTCACAAAGGCTTAGGGGACAACTGGTTGAAGCCGCAAGAAGGCTTGGGGATAGAGTCTTTGATGAAGTGACCCA TGGTAGAGAACTAGTGGTGTTTCTGGAGAATCATCTTCCTAACTTTTTGCTCCATCCCCCTCGCACTGCTTAG
Protein sequence (LotjaGi4g1v0000300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDETELQNPLFLDIKSEDDKIEFQRVENQSFAPEKGEGSGVVFSREAPLMGKESRMSTPYCCNAKKLKSRAVSIDCEFGN NEKTVVEKKLCRQDRIELGRLFQDAVSSHNWELAESLILVADPQTLNDALCITLDSIWFLTTELELTGITGFIRKIIANG AYDFTRAALRTSFLASCVSACQSRTMSLADTVAVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGIHSRLQNE RDNVIHNSAVETQLRLSAFKTFLDLAGNCLTGKDFSEAFDAACFPLTLFSSSFDPGWAFGVSATVIQGLLGMLVEGGADN VNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVEWF VQRGCRDMELCLALTAATSSCQVHIAAYLLPHVPQQVLGALSVEILKAAGERSGGSLDGVAFLLQSDFLGDPAATYAVAD IIAKSEDEAVAPELKTFLRDHWSEGAYMEGLRLGQEHYMNLVRIIKWGESPICLRDLPAPLTVAIAYLPLYRECVKAGGC LFSQRLRGQLVEAARRLGDRVFDEVTHGRELVVFLENHLPNFLLHPPRTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 606 | 604 | 0.0 | – | |
PANTHER | 3 | 606 | 604 | 0.0 | – | |
Gene3D | 302 | 438 | 137 | 2.0E-8 | ||
SUPERFAMILY | 322 | 433 | 112 | 1.16E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0000300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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