Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0002100 |
| Transcript ID | LotjaGi4g1v0002100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein root uvb sensitive 6; TAIR: AT5G49820.1 root UVB sensitive protein (Protein of unknown function, DUF647); Swiss-Prot: sp|Q93YU2|RUS6_ARATH Protein root UVB sensitive 6; TrEMBL-Plants: tr|V7C7I6|V7C7I6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0002100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:404026..408191) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCATTCGTGAGATCCTATGTTGTTCCTGAAGGTTTCCCTGACAGTGTTACCCCTTCGTACGTGCCGTACATGACATG GAGGGCATTAAAACACTTCTTCGGTGGAGCAATGGGCGTTTTCACTACTCAAACCCTTTTGACTTCAGTTGGCGTCTCTA GAAACACAGCCACTCCTGGTGCTGTAGCTATCAACTGGATTCTCAAGGATGGTGCTGGTCGTGTGGGAAAGATGCTTTTT GCACGCCAAGGAAAAAAATTTGATTATGATCTCAAACAGGTACTACTAATTTACTTTTTTCTGTTACAAATTCCCACAAT TGCTGTCTCTAAGTTATTCTTTACAGCTGCGCTTTGCAGGTGATCTTCTCATGGAGCTGGGTGCCGGAGTGGAACTGGCA ACTGCTGCAGTGCCACATCTATTTCTTCCTTTGGCTTGTGCTGCTAATGTAGCAAAGGTTTGATTACTTTTTTCTGCTGA CTCATTCGATTCAGTTTCATGTCTGCTCAGCAATGCTTATTTGTTTATTTCTGCTCATAGAATGTTGCTGCTGTCACATC AACATCCACTCGGACACCAATTTACAAAGCCTTTGCTAAAGGAGAAAACATAGGGGATGTCACTGCAAAAGGAGAATGTG TTGGCAATATAGCGGACCTGGTATGTTTATGAACTTCAATAACAATTATTAACTGTAATGTTTGGTAAATTTTGGATAGT GCCAGTTTAATTAAAAAATTTAGGATTGTTTCAGAAAATTCAAACAAGGAACAATAATAGTTCTGAAAGAAAGATTCTCA CGTTGTCTGCCAAATGAAACAATGAAAAGAAGAAAATTAATCTAAACTTTGTACCTGGGTTTCCTTGGGTATAAACATGT TTTGATTGCATCACATGTCAGTATTATAGTATGACACTAAAGCCACTTGATCTGTAAGCCTATGCTTTCTAAATGCCAGC ACTTCTCATGTCCCTAATATATCTCCAAGCTTACTTTTTTTTTAAACCTTTAGAATCGTATCATCCATGTTAGTAAGCTT TAGTTTGTTTTTTCTGCCCCTTTTGATGAAATGAAATGCTGAATCTCTTCCCTAATTTGCAGTTAGGAACTGGTTTGAGC ATATGGATTTCCAAAAGGAATCCGTCGCTTGTCACCACGTTTTCCCTCCTTTCATGTGGATATATCCTTAGTTCTTATAG AGAGGTTTGGTTTTGTATTTCTAACCTTGATGCTTATATAGCTGTACTTCCAATCTTGTGGTTGTGTCACTAAAGCTTAT TTATTGCATTAATAGGTAAAGTCTGTGGTTTTGCATACACTTAACTCAGCAAGATTCAGTGTGGCAGTAGAGGCCTTCCT GAAGACAGGTATCTTAACAGTGCTGTAGATGTCCTAGCATCTGACGTGCCAACACAATAAATAAATAAAAGAGATAATGA AGTGATTGTGTATCTTTTTGACATATCAGATAGTCAATCCATGCTACTCGTATCGATCAATCTGTTTTCTCTTGTATAGT CATTTTCGTATATACAAGCAATTGGTTTGATATACTATTCCACCTTCACTCATATTTTAAATAAACTAATCCATTTCAGG ACGAGTTCCCACTTTGCAGGAGGGCAATATGAATGAGAATATATTCAGTTTTCCCTGGAAAGATAGGCCTGTTGTTCTAG GTAAATCAATGGACTGAAAGGTTTTTAGATGTCAACTGCAGCCAATGTCTCGAAAATTAAAACTGAAGTTTTCCTTTTAA ATGTTTCTATAGGATCAAGAATCAAGGAGGCATTCCGAGACCCTAGTGCATATGTTGCCATAGAGCCCCTGTTCGATGTA TGTCTTTTTTGAGAGATTAAAAATTAACTTATTGTTATATTTATTTCTGGATTGGTGATGCTATATAATACAATTATTCT GTTCTCTTATATTGGTAACAGAAGGAGAGGTATATTGTGACATATGACCCTTCAAAATATAAGGTCTATGCTGTGCTGAA GGCTCAGGCGAAGTCAGACGATATTCTAAAAGCAGCATTCCACGTGAGATATATTGCTTTATTACAAATTTATTTGAAGA GCTGGGGAATTCTTAATTTGAAAAATACTTAAAAGTTTAAATAACCTTATTCTGCAGGCTCACGTGCTCTTGAGTTTCAT AAAATCATCGAATGAAAATAAGGTCTCATCTCAGAAGCAAAGGGAGGATCTTAACTCAAATGTGATGCTCACAGTTGCTG ATCTTGAGGCTTGTATTGCTGATTCTTGCAAGGTCGTGGCAAATTCTTATGGGCTTTTCAAGAATAAAGCTAAGGAGCAG GTAAATGGAGCAAAATTATCTGTTTGTTCAGCATCATATCATGTTTACTCTGCATTATTTGTGTACCTGGTTTTGCATGC TATCTTTGAAATGTAATTGTTAGTATTGAGGTCTTAAATTTTTGGACATGTGGATGGCCTTCTGTTTGTCCATCCTAGTC AACGGGATTTTTGTTTCTTCTGGGTCATGGGGTAGGAAGAGGTACTACTACTAATTCAGTTTCTCGCAAGTGTTTCTATC CCATAATTTGAGCTTGGTCATCTAAGCCCTTGGCTTGTTACTGATGCCCTGCTTTGGGTGAGTATACCTCGAGCATTGCA CTGGTTTGTGTAATTCCCAAAGGTACTGAAGGAAGGATTTCTTTTGAAGTTTTTAAAATAGGGTAAAACTTAAGTATAGT ACCATTGGTGCTGTTGGTACTGTTCTTCAATCAAAAAATGACACCTGGAATTGCACTTAATTTGTTTTGGCTCCATATCC TGGAATCTGCAAACACATCTTCCTTGATCCTTCCCTCTTCCTCCAACCTCTCCAACCTTCCATCTCCCTACCACACCGCA CAACATGCCTTTCCTTAAGCCCGCAGATGTCAATTGAAGTGCTTGTCCCAGACATTAAGACATGGACGACCATGGAAAGA GCACGAGCTCTTAAATTTTAGCAGCCTTGACACCGCCATGGTGGATTACAGAACCAATTTTGCAAGATCACCCTACTTGA TTGCAATTTCTTCATATGAAAGCCCTCTGTTCTTTTTGACACCGCCATAATTTTTTTTGTTGAGATTCCAGATATTTACT TCTTCACACAAATGTTTCTTCAATCCCTAATATTGTCACTCTAGAGCCTGAGAAGATAAGTTTCATACCCTCTTTCATAG GTTTATGGCACTGGATTCCCAATGTTCTTGTCTTTAAAAATGAAGAAAAAGCCATCACAAGTTAAAAGAGAGGAGATATA CTCTAATTTTCGGTGGAAACATGGTTACAGAGAAAAAGGACAAAGGAGTTCGTGTGGGAGAAAAGAATTGATTTGAAAAC TCAATAGTGTAGGGGTTAATAAGGCCAGGTGTCGTTTTATGATTGAAGAACAGTACCAACAGCACAAATGGTAGTGCACT TAAGTTTTTCCCTTTAAAATAAAGCTGTTGGCTTAGAATTTGGTTAATGCTAATCTTCATCCTGTACTTTATAATTACAT AGTTACAATAGAGATAGCTAGCATGTTTGGAAAAACACTCTTACAATTTATTCTAAAGTTAGAATTAATTTTGATGAGAA ATGTACGTGAATAGCTTACGGGTGTCAGCGTTGATTATGAGAAAAAATACGTTTATCCAAACATGCTAACATCTAGAAAC ACTTCTACTTTTGTGGTGGAAGATCGCCACCTTGATAATGTAAACTGTAACCAATCGTATTGTAAATTGTTAATAATAGA CATTTTAGGGTCCATTTCCACGGTCAACATCAAGTTATGAGATTTTATTTTATTTGTGTATGTTTGTTAAATCATTGCAA AAGCCAAATACATGTAATCTATATAGTTATGAAATTCATATAACAAAAATGTATGACACTTTTTTTTTGTTACAAAAGGA AAATTAAAATTGTAAAATGTATGTCACTTTGTGCACAAGTATATTTCTCTCTTCATATCTCTATATCATGTCAACCACCA CTTCTCTTTGTTCTTATCCTTTTTCTTTCATTGTTGTACTAGTTTTGTACAGAGGTATTGTACAAAGATAATTTATCTAT AATCTATTTGCTTGTAGGGTTGGGCTATGTCAGAATCACTTTTAAATCCTGGTCGAGCTAGGCTGTGTCAACTTGATAAT AGATGA
CDS sequence (LotjaGi4g1v0002100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATGGAGGGCATTAAAACACTTCTTCGGTGGAGCAATGGGCGTTTTCACTACTCAAACCCTTTTGACTTCAGTTGG CGTCTCTAGAAACACAGCCACTCCTGGTGCTGTAGCTATCAACTGGATTCTCAAGGATGGTGCTGGTCGTGTGGGAAAGA TGCTTTTTGCACGCCAAGGAAAAAAATTTGATTATGATCTCAAACAGCTGCGCTTTGCAGGTGATCTTCTCATGGAGCTG GGTGCCGGAGTGGAACTGGCAACTGCTGCAGTGCCACATCTATTTCTTCCTTTGGCTTGTGCTGCTAATGTAGCAAAGAA TGTTGCTGCTGTCACATCAACATCCACTCGGACACCAATTTACAAAGCCTTTGCTAAAGGAGAAAACATAGGGGATGTCA CTGCAAAAGGAGAATGTGTTGGCAATATAGCGGACCTGTTAGGAACTGGTTTGAGCATATGGATTTCCAAAAGGAATCCG TCGCTTGTCACCACGTTTTCCCTCCTTTCATGTGGATATATCCTTAGTTCTTATAGAGAGGTAAAGTCTGTGGTTTTGCA TACACTTAACTCAGCAAGATTCAGTGTGGCAGTAGAGGCCTTCCTGAAGACAGGACGAGTTCCCACTTTGCAGGAGGGCA ATATGAATGAGAATATATTCAGTTTTCCCTGGAAAGATAGGCCTGTTGTTCTAGGATCAAGAATCAAGGAGGCATTCCGA GACCCTAGTGCATATGTTGCCATAGAGCCCCTGTTCGATGGTTGGGCTATGTCAGAATCACTTTTAAATCCTGGTCGAGC TAGGCTGTGTCAACTTGATAATAGATGA
Protein sequence (LotjaGi4g1v0002100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTWRALKHFFGGAMGVFTTQTLLTSVGVSRNTATPGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFAGDLLMEL GAGVELATAAVPHLFLPLACAANVAKNVAAVTSTSTRTPIYKAFAKGENIGDVTAKGECVGNIADLLGTGLSIWISKRNP SLVTTFSLLSCGYILSSYREVKSVVLHTLNSARFSVAVEAFLKTGRVPTLQEGNMNENIFSFPWKDRPVVLGSRIKEAFR DPSAYVAIEPLFDGWAMSESLLNPGRARLCQLDNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 253 | 253 | 3.1E-161 | – | |
| SignalP_EUK | 1 | 15 | 15 | - | – | |
| PANTHER | 1 | 253 | 253 | 3.1E-161 | ||
| Pfam | 2 | 204 | 203 | 3.6E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0002100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…