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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0005300 |
| Transcript ID | LotjaGi4g1v0005300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT5G47740.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35; TrEMBL-Plants: tr|V7C9N2|V7C9N2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0005300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:858773..861354) extracted from Lotus japonicus Gifu genome v1.2.
TCTAACTAGTATTGCTAGTGACAACTTAATTGGATTTGGATACATGTTTTACTTCTTCAAGATTTCCACATTTTCCTCTC TTTGTATTATTTAATTCCTTACCTATTCAATTCAACAACATGTCATTCTCGTTCAAGTAAGTTCCTCTCTTGTCTTGTAA CACAAATATATAAATATAACTTTAGTTTGTCCTTCAAATATTAATTTATGTAGGCGAAGTTAACGGGGGAGACATTGCAG TACCATTCACATGGAGGAGTGCCATCACGAAATGTTGAGCTACACTAATAGCCTGAGCTGTGAGATAGAGATAGTGGAAG AGGACAACCATGACGGGGCTAGTCCTATGGCCGCCATTGGCGAAGAAGATGAAGAACAAGATTCTGTTTATGTGGCAGTG GGTAAGGGCGACACAAGCATGGAAGCTCTGTCATGGACACTAAACAACTTGGCTACTCGCTCAACCGTACTTTATCTCAT CCATGTTTTCCCTGAGATCAAGCACATTCCAAATCCATGTAAGTCATCAATTCAGTTATATCAAATATTTGATTGTTAGC TATGCTATTGATCCAAAGCTATGATTTAATTGCTAGCTTGTTTTATTCCCCCTTTATATTTCTGTGTTATTTGGTTTCTT CAATTCAAAGAAAGCTCAAACTATGGATCTATTTTGGGGTAGGGTGTAAAATGGTCCGTTAATTAGACTCAATAAATGAC TTCCCAAGCTGGAATACTAAGATTGTGGGAAACCAAGTAGATGATTGGGGACCAGATTGTAAAATGAGTTTTGTTTCATT TTATACCAACTAAACAGAAATAAAATTTCAGTGTCTATGTGAAAATACTAATTTCCATAGGCTGACATATCATGTTCAAA TAATGTAATTTCTTAAGATGGATCTAAAGATGTGTGAATATCTTTTTCTGTGTGATGACAGTGGGAGTGGGAATGATTCC AAGGAATCAAGTGAGTGCTGAGCAGGTGGAGAGTTACATGGCTCAAGAAAGAGGCAAGAGGAGAGAGCTCCTTCAGAAAT TCCTCCAATCATGTTCTAATTCCAAGGTACTAATTCTACAAATCCACTATTGAAAGTAACTAAACCCTTATTCAATTAAT AACAAAAATATTTAAAACAGGTTAAGGGAGACACCATCCTCATTGAGAGTGACATGGTTGGGAAGGCTATCCTTGACCTG ATTCCTATTCTTCATGTAAGAAAATTAGTGATCGGAGCCAACAAAGTCCAACTCAGGTATATAGTCCTAAACCATTAATA GCATCTTTGGTTCCAGGTGAAATGCTCTCGAATCACATGTGATTTGAAGCTACTAAGTCTTAACTCATAAGTAAAGTGCA TTAAGATTTTGTGCAAATTGTGAATTCAAACTAGTACAGTATATTTCAAGTTTATTAGGCCTGTATAAGAAGCATTTCAC ATTTAATTAAGTGCATGCATTTTGGATGAACAGAAAATCAAGATCATCAAGGAAAGGGAATGGTGTAGCTGATCAGATAC TGCAGAATGCACCAGAAAGTTGCAAGGTGAGAATTATATGTGAAGGAAAGGAAGTGAATGAGCAGATGATGTTGATGTCA CCCTCTCCACAGGTCCTCACAGTCACAGCAGCTTCTACCTCTGCTATTTCCATGACCCCAAAAGAACGTCAGCAAAGTGA TTTGGTTTCATGTATTTGTTTCAAGCCTAAGTTTAAATGAGCGTGTGACTAAATTGCAGCAAATTTGGGGATTGTTAGCA CCAAAATTTACAGGTTTGGAAATTAAATATTAAGATATGGTGTACATGGATGCATGGTATATTTCAGTGTATTTTCTACT TTAATGCCAGATTATTATCCATTGCATATATTGGTCGAATTTTAGCTTACTGAGTCGAGATTATTGCAACATTTCCTTGG TCAAAATCATATACCAACTTGATTTCCAAGTCGAAATATGGCTTTGGTTTTGAGTTCCAAATTATATGTTGATGGCACCA TTCTAATGCCAAAGTAATGCCATGTATATATATTTCTCGACCATAGGATTTCGACAAGGAGAAAATGCAAAAGTATTAAG TGGAAACTTTTGCTAGTATTTGACCAGTTTAATTTTAAACATGTTAATGGATGTGCACGAGATCAATTCAAAGGCACGTG GCAGATAGTAGTGGCAAATCTTAGTGGCAGTTTCTCAACAAGATGGAATCATGTATGGAGCGGTTACCATTTAGCATGGA GCAATGCAAGAGAGCTTCAGAGTTTCTTATCTCAACCGTAAAGCCTCAAGCAACAGTTAGTGGAAGATATTAGTGATATT AAGTGGAAGTTACAAGTTGGCTATTGAAGTGGAGTAGTGGAAAATGTGGCTGCAAGCTATTATATTTGTACTTATGCCAA GTGTATGGCTCTAGTATAGGGAGTTATTTTCTAAGATGTAATCTCTACCGTAGGATCTAGTGGCAGTTTCATTTCAAGTT CTATAAGTAGCAAATCTGATTGTAAAATTAAGCAGACTCACACAACTACTCAAAACTCTCCATGGATGCCTCCAAGTCTC ATGTGACATATGGCTACAAAGA
CDS sequence (LotjaGi4g1v0005300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGTGCCATCACGAAATGTTGAGCTACACTAATAGCCTGAGCTGTGAGATAGAGATAGTGGAAGAGGACAACCA TGACGGGGCTAGTCCTATGGCCGCCATTGGCGAAGAAGATGAAGAACAAGATTCTGTTTATGTGGCAGTGGGTAAGGGCG ACACAAGCATGGAAGCTCTGTCATGGACACTAAACAACTTGGCTACTCGCTCAACCGTACTTTATCTCATCCATGTTTTC CCTGAGATCAAGCACATTCCAAATCCATTGGGAGTGGGAATGATTCCAAGGAATCAAGTGAGTGCTGAGCAGGTGGAGAG TTACATGGCTCAAGAAAGAGGCAAGAGGAGAGAGCTCCTTCAGAAATTCCTCCAATCATGTTCTAATTCCAAGGTTAAGG GAGACACCATCCTCATTGAGAGTGACATGGTTGGGAAGGCTATCCTTGACCTGATTCCTATTCTTCATGTAAGAAAATTA GTGATCGGAGCCAACAAAGTCCAACTCAGAAAATCAAGATCATCAAGGAAAGGGAATGGTGTAGCTGATCAGATACTGCA GAATGCACCAGAAAGTTGCAAGGTGAGAATTATATGTGAAGGAAAGGAAGTGAATGAGCAGATGATGTTGATGTCACCCT CTCCACAGGTCCTCACAGTCACAGCAGCTTCTACCTCTGCTATTTCCATGACCCCAAAAGAACGTCAGCAAAGTGATTTG GTTTCATGTATTTGTTTCAAGCCTAAGTTTAAATGA
Protein sequence (LotjaGi4g1v0005300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEECHHEMLSYTNSLSCEIEIVEEDNHDGASPMAAIGEEDEEQDSVYVAVGKGDTSMEALSWTLNNLATRSTVLYLIHVF PEIKHIPNPLGVGMIPRNQVSAEQVESYMAQERGKRRELLQKFLQSCSNSKVKGDTILIESDMVGKAILDLIPILHVRKL VIGANKVQLRKSRSSRKGNGVADQILQNAPESCKVRIICEGKEVNEQMMLMSPSPQVLTVTAASTSAISMTPKERQQSDL VSCICFKPKFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 251 | 243 | 4.9E-110 | – | |
| PANTHER | 9 | 251 | 243 | 4.9E-110 | – | |
| Gene3D | 38 | 206 | 169 | 1.1E-9 | ||
| CDD | 45 | 201 | 157 | 5.14725E-30 | – | |
| SUPERFAMILY | 45 | 190 | 146 | 4.35E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0005300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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