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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0005500 |
| Transcript ID | LotjaGi4g1v0005500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | weak chloroplast movement under blue light protein (DUF827); TAIR: AT1G12150.1 weak chloroplast movement under blue light protein (DUF827); Swiss-Prot: sp|Q9FWW5|Y1215_ARATH WEB family protein At1g12150; TrEMBL-Plants: tr|I1MQX2|I1MQX2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0005500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:879638..882885) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATATGCATGTTTTTCTAACAATCGTATAATATTGTATCATTCTAATTTCTAACCATACATGAAGAGAGCCAGCCAT TAGATTACATCAAAACATCAGGGATTGAGCTGCACCTTAACTACCCTTCATTAAGGTTATCTTGCCTAATCACATTTACC ATGAAATTTCCAACGTGGCCTACCCGAATCTTCCTTCTTTTCCGTATATACCTATGATTTTTAATTATTCACAGGAAAGG TCATTTTTGTATTTAACCAGCCTGTTTTTACTGTCAACAACACCACAAACCTCTCTGTCCTACGAGCCAAAATAGCATAA CTAATTCTACATTCTAGCAGATTTAACCAGCCATAATCTGGCCTGTTCTTTTCAAAGGGCTCAAAGCTTTCAGATGTGCA GAAAAGTTGGACTCAAAGAACCTACGTTTTCATTAGGGTTCTTTTGAGTTCCAACACCTTTCTCTGGAAATTCATTATCC TGGTTCTAGCTCATCAAGTTAGAAGAGGTTTTCTTCAGGATTCATCTTTGTTTCTCTCACGTAAGAACATTGCTCATTTT GTGATCATTTTCATTTAGTTTAATATTATATGTGTCCTTCAATCTTGCTTGATATTCAATATCAGACAAAATGAAAAATT GGTTGTTTTAAATTAAGTTTGAATTATGAATATGTAGTTATATATGTACAACGTGTTAGAATTATTTATTAATATCAGAG CTGGAAATATTTGAAAGTTTTAAATATTTCCCTGTGCAATTTCATGTTCATATCAAGAGTTATGTTTAGTTTGATCCATG GAATGCTCATTGCAATTTAACTTGCAGATACCCTTTTCAAGTTAGAGCAAAAGAGAATGACAAGCGTCAGAAAGTCGGAT TCTCCAAGGGGAGAGGTTGGAGAGATTGACACAAGGGCACCATTCCAATCTGTCAAAGCTGCTGTTACCTTATTTGGTGA AGTAGCTGTCTCTAGGGACAGATATGCTGTCAAGAGAAGGTCATCTGAGGTATACATCAAATATAACTTCTCATTGAACA AATATAGTCAGTTTGGATACGGATCAAAGAGCAGTTATTGGATCTCATCCAATGTTTTTTCTAGTAGATAACCTCAAATT AGTGCTTTTTGGTACGTATCCAAACAGGATCATATGACTGGGGAAAATATCATCTTATTATCCTTGGCAGCTTGATGGCA AAGTTCAAAATTGCATGACACTTTTTTGAGGATGTTTTTGATGTTTGTTATGGCAAAAGATTTTCATGCTTCTTTGGTGA TTTGCAGAGTGTATTTGAAAAGGAAACACAGCTTATCTTGACCCAAAGAGAATTGAACAAGATAAAGAAACAGGTGGACA GTGCTGAAGCCACCAAAGCTAAAGCCCTTTCTGAACTTGAGAATGCCACAGAGATCCTTCAGAACTTGATAACCAAGCTC GCCAATGTGAGAGAATCTAAGCAATCGGCAATGGAAGCAGTTGAAATTGTGAGGAATCAGAGCAAAGAATTTGAGAAGAC ATTATCCTTTAAAGCTATAGGATATGAAGCTTGGAAACAAGAACTAGAACATGCAAGAAAAGAGTACACAGCTACTGTAA CTGAACTAGATTCTTGCAAGCAAGAACTCAACAAAATCAGGCAGGATTTTGATGCAGCTTTGGAGGCAAAGATGGCAGCA TTCCAGACAGCAGCAGAAGCTCAGCGCTCGGCGAAATTAAACTCTGAAAGGATCAGTGAACTCTCAAAGGAAATTGCAGA CATGAAAGCATCAATTGAACAATTGAATGAAGCTCAAGTTGATTTTTACAGAACTGCTAAGGGAGAAGCACAGGAAAAGT TGGAGTCCTTAAAGAATGAATATGACCCCGAACTAGTCCAAAGTCTAGATGCCAAACTTGCTGAAACAAGTGCAGAGATT GAGGTTCTTCAAGAGCAGATGAGAAAGGTTCATGCTTCTCATATGGAATCTGTGAGACTTCTAACTTCAGAGCTTAAAGA AGCCACAAAGACCCTACAGGACGTTGCTGCAGAAGAAACCTCCCTTAAAAAACTAGTGTTTTGTCTTAGGACAGAATTAA GACAAGTGAAGAAGGAGCAAGATGAACTGAAGGAGAAGGAACAGGCTGCAGAGGCTCTTTCTGCTAACCTCACTGGTGAA CTGCAAGAGAGCATGGAAGTTGCAAGGCCTCAGCCAGGCACCGTGGAGGATCTAGAAGCTAATATCTTTTACAAGCAGAG TATGAAACTCCAGAGGCTAAAATCCGAGACAGAAGATGCCAGAAGAGAAGCAGAAGAGACGAGCAGAAAAGCTCAAGGGC TGAAGCAAGAAGCAGAAAAATCCCGAGCAGCGGCAGAAGAAGCAGAGAAAAAACTTGAGCTTCTTCTGAAAGAGGCTAAA GCAGCAAAAGCAGCAAAGCAAAGAGCCATGAAGGAGATGAAGATTTTGTCTGACGTGCATAGTAGAGCCTCCAATCCAAA ATTCGGTGGTAAGATCAAAATGTCAAGAGAAGAGTTTGAGTCACTTAGAGGAAAAGTCAAGGAATGTGAAGATTTGGTTG AAAAGAAAGAGGGAGCTGTCATGGCTGAGCTACAAGCAATCTACGCAAGAAAAAATGAACTACACAGAAAGGTGGAAGCT AATCTGAAAGCAATTGAGGAAACAAATGCTGCAACTGAGACTGCTTTGTGGTATACAGAAATGGCAGATTCTGCAAAAGT GGCAATTGAGAATGAACTTAAAAGATGGCGTCAACAAGAACAGGTGGTGGTGGCTAATGCATCTTCCCAGATATCGGTTC ATCCTTCAAGACTAATCTCATTGAGAACCAAGAAGTGAAATCAGTCATCTTAGAGATTCAGATGTCAAATGGGAAAGGAC ACATCTTCTTGGTTGTTGTGTTGGCTTTCTATCCTTCTCTTGGAAGACTCCAGACACTGGACGATCACTTATATATCAAC TAACTCTTCCATATGCTTGGAAACCATGTTTATGTTTCCATCTTTCAAAAATAAAATCAACAAAGAAAAACGAGCTTTTG CAAATACAAATTCTGATTCCTATCTTGCTGGTTTTTTTTTCTTCATGTTCTTAGGACCTTTACTACAGATGTTTGTGGCT CTTGAATATTCCTGAGAAAGAGTAAGATGTAGCCGTTCATAAGGGCCTAGCCTATTATGTATCATCACACAAAGCTAAAG AAAATTAACGTACAGGATATAAAGCAAACTCTGTCTTATTATGCATGG
CDS sequence (LotjaGi4g1v0005500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAGCGTCAGAAAGTCGGATTCTCCAAGGGGAGAGGTTGGAGAGATTGACACAAGGGCACCATTCCAATCTGTCAA AGCTGCTGTTACCTTATTTGGTGAAGTAGCTGTCTCTAGGGACAGATATGCTGTCAAGAGAAGGTCATCTGAGAGTGTAT TTGAAAAGGAAACACAGCTTATCTTGACCCAAAGAGAATTGAACAAGATAAAGAAACAGGTGGACAGTGCTGAAGCCACC AAAGCTAAAGCCCTTTCTGAACTTGAGAATGCCACAGAGATCCTTCAGAACTTGATAACCAAGCTCGCCAATGTGAGAGA ATCTAAGCAATCGGCAATGGAAGCAGTTGAAATTGTGAGGAATCAGAGCAAAGAATTTGAGAAGACATTATCCTTTAAAG CTATAGGATATGAAGCTTGGAAACAAGAACTAGAACATGCAAGAAAAGAGTACACAGCTACTGTAACTGAACTAGATTCT TGCAAGCAAGAACTCAACAAAATCAGGCAGGATTTTGATGCAGCTTTGGAGGCAAAGATGGCAGCATTCCAGACAGCAGC AGAAGCTCAGCGCTCGGCGAAATTAAACTCTGAAAGGATCAGTGAACTCTCAAAGGAAATTGCAGACATGAAAGCATCAA TTGAACAATTGAATGAAGCTCAAGTTGATTTTTACAGAACTGCTAAGGGAGAAGCACAGGAAAAGTTGGAGTCCTTAAAG AATGAATATGACCCCGAACTAGTCCAAAGTCTAGATGCCAAACTTGCTGAAACAAGTGCAGAGATTGAGGTTCTTCAAGA GCAGATGAGAAAGGTTCATGCTTCTCATATGGAATCTGTGAGACTTCTAACTTCAGAGCTTAAAGAAGCCACAAAGACCC TACAGGACGTTGCTGCAGAAGAAACCTCCCTTAAAAAACTAGTGTTTTGTCTTAGGACAGAATTAAGACAAGTGAAGAAG GAGCAAGATGAACTGAAGGAGAAGGAACAGGCTGCAGAGGCTCTTTCTGCTAACCTCACTGGTGAACTGCAAGAGAGCAT GGAAGTTGCAAGGCCTCAGCCAGGCACCGTGGAGGATCTAGAAGCTAATATCTTTTACAAGCAGAGTATGAAACTCCAGA GGCTAAAATCCGAGACAGAAGATGCCAGAAGAGAAGCAGAAGAGACGAGCAGAAAAGCTCAAGGGCTGAAGCAAGAAGCA GAAAAATCCCGAGCAGCGGCAGAAGAAGCAGAGAAAAAACTTGAGCTTCTTCTGAAAGAGGCTAAAGCAGCAAAAGCAGC AAAGCAAAGAGCCATGAAGGAGATGAAGATTTTGTCTGACGTGCATAGTAGAGCCTCCAATCCAAAATTCGGTGGTAAGA TCAAAATGTCAAGAGAAGAGTTTGAGTCACTTAGAGGAAAAGTCAAGGAATGTGAAGATTTGGTTGAAAAGAAAGAGGGA GCTGTCATGGCTGAGCTACAAGCAATCTACGCAAGAAAAAATGAACTACACAGAAAGGTGGAAGCTAATCTGAAAGCAAT TGAGGAAACAAATGCTGCAACTGAGACTGCTTTGTGGTATACAGAAATGGCAGATTCTGCAAAAGTGGCAATTGAGAATG AACTTAAAAGATGGCGTCAACAAGAACAGGTGGTGGTGGCTAATGCATCTTCCCAGATATCGGTTCATCCTTCAAGACTA ATCTCATTGAGAACCAAGAAGTGA
Protein sequence (LotjaGi4g1v0005500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSVRKSDSPRGEVGEIDTRAPFQSVKAAVTLFGEVAVSRDRYAVKRRSSESVFEKETQLILTQRELNKIKKQVDSAEAT KAKALSELENATEILQNLITKLANVRESKQSAMEAVEIVRNQSKEFEKTLSFKAIGYEAWKQELEHARKEYTATVTELDS CKQELNKIRQDFDAALEAKMAAFQTAAEAQRSAKLNSERISELSKEIADMKASIEQLNEAQVDFYRTAKGEAQEKLESLK NEYDPELVQSLDAKLAETSAEIEVLQEQMRKVHASHMESVRLLTSELKEATKTLQDVAAEETSLKKLVFCLRTELRQVKK EQDELKEKEQAAEALSANLTGELQESMEVARPQPGTVEDLEANIFYKQSMKLQRLKSETEDARREAEETSRKAQGLKQEA EKSRAAAEEAEKKLELLLKEAKAAKAAKQRAMKEMKILSDVHSRASNPKFGGKIKMSREEFESLRGKVKECEDLVEKKEG AVMAELQAIYARKNELHRKVEANLKAIEETNAATETALWYTEMADSAKVAIENELKRWRQQEQVVVANASSQISVHPSRL ISLRTKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 550 | 547 | 8.5E-279 | – | |
| PANTHER | 4 | 550 | 547 | 8.5E-279 | – | |
| Pfam | 16 | 220 | 205 | 3.3E-22 | ||
| Coils | 60 | 115 | 56 | - | – | |
| Coils | 137 | 178 | 42 | - | – | |
| Coils | 200 | 220 | 21 | - | – | |
| Coils | 222 | 242 | 21 | - | – | |
| Pfam | 232 | 542 | 311 | 6.4E-17 | ||
| Coils | 248 | 275 | 28 | - | – | |
| Coils | 280 | 300 | 21 | - | – | |
| Coils | 308 | 345 | 38 | - | – | |
| Coils | 369 | 438 | 70 | - | – | |
| MobiDBLite | 375 | 405 | 31 | - | – | |
| Coils | 483 | 517 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0005500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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