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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0006500 |
| Transcript ID | LotjaGi4g1v0006500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT4G16380.3 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|P16053|NFM_CHICK Neurofilament medium polypeptide; TrEMBL-Plants: tr|A0A078H605|A0A078H605_BRANA BnaA01g17460D protein; Found in the gene: LotjaGi4g1v0006500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:975483..977299) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAATTTGGTGAGTCGGCAATCAGTCACTATAAGCAGCGCTAAACACTCACCCAGCTCCTTCATGTCACGACAAATCT AAACATGATCCAACGTCAAAGCACTACGTGTTGCTACCTTATTGGTTCTTGTGTTGAACCTATTGCCTTCTTAAACCTTC CACAGTCTCTTATTTTCTTTTCCCTTTTTACTCTGTTTCATCACTCTTAGACACTTTTTTTTCTTCTTTTCATTTCCCTC TTATAATTCTCTATCATTTTCATCCACCATTCAGATCTGATCATCGATCTCTAGTATATTCCACAACTATCCATGGCTGA AAAGAAGGTATGATGGTGTTTAAATTTATCTTAATCATATTAAGTGATTTTTACTATTGGTTGTTACTCCTTCTATCAAT TGAATTGCCACATGCCCAAACATGCCATTCTTCTATTCTATTCTATGATCACTTTGATATGTGTTAATTCAATTTGAATT TTGATGGATGGTTGTCTTGATCGATCACGTTAATTAATTGATCAGGTGGCCATAATGAAGCTCAGCGTTGATCTTCAATG CAGCAAATGCTACAAGAAGGTCAAGAAGGTTCTCTGCAAATTCCCTCGTGAGTCTCTCATCATCCATCACTTGCTATAAC TTTTTTTATTAAGGAAATGAAATTAACTAAGATATCAAATTGAGTTGATTTTGAAATTTTGTGAACAAGAGAAATTCGAG ACCAGGTGTTTGATGAGAAGAATAACATGGTGACAATCAAAGTGGTGTGCTGTGATCCTGAGAATTTGAGGGATAAGATC TGCTGCAAAGGTTGTGGTGCCATCAAAAGCATTGAAATTGTGGAACCTGCACCTCCTCCCAAACCAAAACCACCCCCTCA GCCAGAGAAGCCCAAGCTACCAGAAAAGCCCAAGGAGCCAGAGAAGCCTAAAGAGCCTGAAAAGCCTAAGACGCCCGAGA AACCGAAGGAACCAGAGAAGCCCAAGGAGCCAGAAAAGCCCAAGGAACCAGAGAAGCCTAAAGAAAAGCCCGCACCGCCG CCATCGGAGAAGCCTAAGGAGATGCCTCCACCGCCACATGTACCGCCGCCACCGGTTCCAATGTGTCCAGGGCCGCCGCC TGTGGCAGTTCCAATTGGGGTGTGTTGTGCGTCATGCTATGAAGGCCGGCCTGGTGGGCCATGCTTTGAGGGTTACGGTG GGCCACCGCCTTGTTATGATTCTTATTATGGAAGGCCCGTGTATGATAGTTATGGTGGAAGCAGACCTTGTTACGTTAGT CGTTGTTGTGATGAATATTTCTCTGAAGAAAACACCAATGCCTGCATAATCATGTGATCACTTATCTCATTCTCTCATCA TCAGTAATAATCCAAGGAATATAATAAATAATTTTTGTTTTTGTAACTACAATACCAAAAACGGTGTTTCATATGAGGGG ATAAAAGAATAAATGATGGATATATGTGTATGTAATGTAACTAGTACTATATTACCATCAAATGTCATGTCTACCATCAA ATATAACTAGTACTATCGAAAATTTTGATATTTTAGTGATGTTCCTTTCAAGTACAAATTAATTAACTACAAGCTAGCAA TATTGTGGCTGATTTGCATTTTCTTCTCAGTGCGTGGAAAGTGGTTTTATTTTATTTGTTTCAAAGGGGGGGTTAATATC TTCATATGTAACCAAAAAAGAGGGGAATTAATGGTGGGCAGCTAATCCTTAACAAGTGACTCGTTGCGTTGTACTTTTCG ATGTGATTTGCTGAAAATAAAAAACTTTATACTTGCAATCATCCCACTAATTCATTA
CDS sequence (LotjaGi4g1v0006500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAAAGAAGGTGGCCATAATGAAGCTCAGCGTTGATCTTCAATGCAGCAAATGCTACAAGAAGGTCAAGAAGGT TCTCTGCAAATTCCCTCAAATTCGAGACCAGGTGTTTGATGAGAAGAATAACATGGTGACAATCAAAGTGGTGTGCTGTG ATCCTGAGAATTTGAGGGATAAGATCTGCTGCAAAGGTTGTGGTGCCATCAAAAGCATTGAAATTGTGGAACCTGCACCT CCTCCCAAACCAAAACCACCCCCTCAGCCAGAGAAGCCCAAGCTACCAGAAAAGCCCAAGGAGCCAGAGAAGCCTAAAGA GCCTGAAAAGCCTAAGACGCCCGAGAAACCGAAGGAACCAGAGAAGCCCAAGGAGCCAGAAAAGCCCAAGGAACCAGAGA AGCCTAAAGAAAAGCCCGCACCGCCGCCATCGGAGAAGCCTAAGGAGATGCCTCCACCGCCACATGTACCGCCGCCACCG GTTCCAATGTGTCCAGGGCCGCCGCCTGTGGCAGTTCCAATTGGGGTGTGTTGTGCGTCATGCTATGAAGGCCGGCCTGG TGGGCCATGCTTTGAGGGTTACGGTGGGCCACCGCCTTGTTATGATTCTTATTATGGAAGGCCCGTGTATGATAGTTATG GTGGAAGCAGACCTTGTTACGTTAGTCGTTGTTGTGATGAATATTTCTCTGAAGAAAACACCAATGCCTGCATAATCATG TGA
Protein sequence (LotjaGi4g1v0006500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEKKVAIMKLSVDLQCSKCYKKVKKVLCKFPQIRDQVFDEKNNMVTIKVVCCDPENLRDKICCKGCGAIKSIEIVEPAP PPKPKPPPQPEKPKLPEKPKEPEKPKEPEKPKTPEKPKEPEKPKEPEKPKEPEKPKEKPAPPPSEKPKEMPPPPHVPPPP VPMCPGPPPVAVPIGVCCASCYEGRPGGPCFEGYGGPPPCYDSYYGRPVYDSYGGSRPCYVSRCCDEYFSEENTNACIIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 1.1E-75 | – | |
| PANTHER | 1 | 240 | 240 | 1.1E-75 | – | |
| Gene3D | 4 | 70 | 67 | 5.9E-5 | – | |
| SUPERFAMILY | 11 | 69 | 59 | 1.14E-7 | ||
| MobiDBLite | 76 | 154 | 79 | - | – | |
| MobiDBLite | 90 | 144 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0006500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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