Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0015600 |
| Transcript ID | LotjaGi4g1v0015600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G11650.2 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B; TrEMBL-Plants: tr|A0A151STW6|A0A151STW6_CAJCA RNA-binding post-transcriptional regulator csx1; Found in the gene: LotjaGi4g1v0015600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1953718..1958259) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAATATCAATGCCAAGATGCAAAAATTGACACGCCTCGTGGTTAGGGTTTGAGGCTCAACCACTCTTTAAAAAAG CACACACACTTGGTTCCTTTTCTCTCCTCCACCACTCTCTCTCTTCGTCGTTTGTTCATTCTTCAATCTCAGATTCAACA CGATGATGCAGCCTGGAGGACCTGGCATGGCTCCACCCCAACAACCCAACCAGCAATACCAGCAACAGCAACAACCCTAC ATGATGATGCCGCCGCAGCAGCACCAACCTCAGCCTCCGACCATGTGGGCCCCATCCGCCGCCCAGCCTCCGCAACAACA ACACGCTCCTCCGCAGCAGCACCAACATGCTCAGCCTTCCACTCCCGACGAGGTCCGCACCCTCTGGATCGGTGATTTGC AGTACTGGATGGACGAGAACTATCTCTACCAATGTTTCGCTCACACCGGCGAGGTTTCAATCAAACCCTATTTTCTCAAA TCACCCTCAAAATTCATGTATTTTCTTTAATTATTTATTAATTTATTTATTTCCTAGTTAGATTTGAACTCGAATTTATC GATCTGGGTGGATAATTGTATAATTTTCAATATATTGATGGTAAAATTAATATTTGGAAGCCTATTGATCTGTTTGTAAT TATTATTTTTATTGAGAGAAGTATTTTTTACTGCTTGCAGTTGGCCACTGTTAAAGTAATCCGGAACAAGAACACGAATC AATCAGAAGGTTATGGATTTCTTGAATTTACTAGCCGTGCCGGTGCGGAGAGAATACTTCAAACATACAATGGCACCATC ATGCCGAATGGCGGGCAGAATTTCAGATTGAATTGGGCGACTTTCAGCGCGGGTGGTGAGAGGCGTCATGATGATTCTCC TGATTACACCATATTTGTTGGAGACTTGGCTGCTGATGTGACGGACTATCACCTGACAGAAGTATTTAGAACACGGTATA ACTCGGTTAAGGGGGCTAAAGTTGTGATTGATAGGCTCACTAGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGAT GAGAGTGAACAGGTTAGAGCCATGACTGAAATGCAAGGGGTTGTTTGTTCAACAAGACCCATGCGTATTGGACCAGCTGC TAACAAAAACCTTGGTACTGGCACTGGCACTCAGCCAAAAGGTTTGTCTCTTTCATGGTTGTTGTATGTTGCTGGCCATT GTTCTGTCAATTCTCTGCTTGATATGATGCTTGCTGTTGCTGCCAATATTTAGTCTATTAATGATTCCTGTTGGATATAA TGCTTTATGAGTGTTTTTTTTTTTTTGTGTGTATCCTAAATGTCATCGTTTAACGTATGATTCTTTTCAGTTACGCTCTT GAAGATATGCCGTCCAAACTCATTTCTTCATAACTTCCTTTAAAAATTTGGCCTAAGTAAATGATATAGAATAAGAAAAT CTTATAGAGCTCCTGTTGTCTCAAAGCAGGGTGTCAAGAGGCTCTGTCATCTCGGAGCCCGGAAATGATTTCAGCTGAAA TGGTTAACGTTTTAATCCATGGCCTTGCATAGGTCAGTTATGCGTTTATGTTTGCCAATTACTTTTGGTGGCATTTTCAT TTCCGCCGTTTATGTTTGCCAATTACTTTTGGTGGCATTTTCTTTTCCGCCGTTTATGTTTGCCAATTACTTTTGGTGGC ATTTTCTTTTCGGCCGTTTATGTTTACCAATTACTTTTGGTGGCATTTTCCTTTCCGCCTATATTGCGCAGATATTCTAG TTGCTTTTTTTTCCTTCTCTGTTCATTTTGCTGGTTGGATGCTTAGCCAAATTACTTTCTGATTAATTTTTTTCAGCCGC CATTCTTAATCTTTGCTCCTTTAATTTACTCTCTTGAGCTTACTGGAAAAACTACATCTGTGTTTCTTTTGTAGCTTTCC CTTACTCTAATAAAGCAAATCTTGTTTACTTTTAAACTTCTTCTGTTCATCTATCTGGTGCTTTATTACTTAAAGTTTGC TATCTCTTATCAATGAGAAAGAAAACTTGGGGCACCTGTGTTTAGCACTTTCTTTTTGTACAAACTGCTCTGCGTCTCGC CTATTATCTGTCACCATTCTGTGTTTCTAAATTTCTCACTTCAATGCTTTGCAATTGAAGTTGTAATTTACTTTATATTG CTCAGTCCTTTGTTTATCCGATTCTGTCAAAAATATCAAGAAGTTATGAATGACTGATGAAGTTTTCTGTTACCTGCACA AGCATTCGACATCTTCCTGCTCCGTTCTCATTTTACCAGTCACTGGCAAACTCTCATTATTCATTGAGTTCTTAAAGAGT CTGCAATACTATAGTAAATAGGATCAAAGGATGACCAATACTGTGTCTGCACTCTGCATATACCTCATTTATTTTTATTC AAAAGCTTTTTGCTACAGAAAAATTAAGTCAATGATATTATTGTCAAGTGTCAACTGTAGAGATCGTGTTATCTAATTTA TATCCACTTCAAAATTGACTTATATGCACAGAAGTGGTTGGCACAAGCAGAATCTTAATACAAAAAAGAGATTGTATGTA ACCTTAACATTCTCCTACTAAATCCAACACTCCATATGCAGTAGCTTTTTACCATGACCCTAGAGCTACTAGTGTCAGAA TTGTTTCCGTCTCTCTTCATGCATTCATTTTTGGTGCCTGAAGAGAGACCAAAATAATTCCCTGATTCTAGAGCTTTGAC TCTAGCATTCATGTGCAGACTTACTATATGTGGAGTGTTTGGTTCAGTAAAAGATTGTTAGGCTGAAGTTATGCCATGAA TTTAGTTCACTTGCATTGAATGACAACTATTCCCATTGAATTGTCTCCACAGTTATTTGGTCTATAGTTATATTTGAATA AATATGGTGTGCATGCAAGGCACCAACCATTTTATTGCTTCTCAACTACAGCGTTTGCCTTTATCTATTTATTTACTTAT GAACATAATTAAATGTGTGGTTCATTTCATACTCCTGACTTCATCTCTATTAGTCAAATATTTAACTTCCAATATTAATC GTCATGTATGGAAAGATACCTGTAATTTGTTGCTTCTTTAATCGCTCTATGCGTGCATGCTTTTCAAACATTCATCTGGT GCTGAATTAGGGATTTTCGATGTGTCCTAACAGCTGTTATGTGTTATGACTGAATGTATGAATAAGCTACACTTGAAGTA GTAACACTTCAAGATTAAATTGTACCTATCATATTTAGCAAATTGTTGAATATTTTTATTTGTTCTCTTCCTTGTTTGGT GTCTTTTTTCTTGAACTGCTTCCTTCCTAATTTAATGTTTTTCATCTTTTTACTTCATGTGTACTTTGAACATGCAGCGT CATATCAGAATTCTCAAGGGCCACAGAACGAGAATGATCCAAATAATACAACTGTGCGTACTTCTTTGCAATATAGAAAT TACTTCCCTTGTGCTTGTTTGTGACTTGTCCTTTTTATTGCAGATTTTTGTCGGCAATTTGGATCCTAATGTTACGGATG ACCATTTGAGACAAGTTTTTGGGCTGTATGGAGATTTAGTTCATGTGAAGATTCCACAAGGCAAGCGATGTGGGTTTGTC CAATTTGCAGACAGGTAAATTAATTTTATGATTTCAATACTTATGAGAAATCACTTACTCTGCCTATGCAGCATGCTGAT TGCACCATGATTTTTCTTGTATCAGGAGCTGCGCAGAGGAGGCACTTCGGGTTTTGAATGGTACACTTTTAGGCGGACAA AATGTTCGGCTTTCGTGGGGCCGAAGTCCTTCAAACAAACAGGTAATATAATTTACTGATTGTGATTCTGAACTGTATCT GCTGCAATGTGTTACTGGTTTTTTATTTATGAATTTGTATTCCTTGGATGATTTTCAGACTCAGTCAGATCCAAGCCAGT GGAATAATAGTGCTGGCGGTGCTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAG GACCCCAACATGTATGCCGGTTATCCAGGATATGCAAATTACCAACCAGCTCAGCAACAGCAGCAGCAGCCACAGCAAAT GGGATACAGTTGAAATCTTGAGCCCCAATTTTCCCAACTTCTGTAATCCTATGTGATACTTATTTTCCGTTGGTTGGAAG ACCTATGTTGCTCTTTTTTCTTTTTTAAAACTAGTATTCTATGATTCCTAATGACATCCATGTTCTGTGCGGATTTTGTA TGATTACAAAAATTGTTTGCTGATTATTTATTTCATGTTTGGAAATTTGATGGATTGCACATTTTATATCTTGCTATAAC TGTTTTCTACTTTTGAATAGCCAAACAACCTTACCCCACTAATTTGAAGAGAAAGTTGTAGTTTGTAATTTTCCCCCTTT TTTCTCATTTTAACTCGCAATGGTTATCACACTTATTTATAAATATTTATATACTTAAGGTAAAATTGACATTTCATACA AAAGTCATTTTCTATCTACCGACCAAACAAAAGGAGACAATAGACACAACACCTCATTCTTT
CDS sequence (LotjaGi4g1v0015600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGCCTGGAGGACCTGGCATGGCTCCACCCCAACAACCCAACCAGCAATACCAGCAACAGCAACAACCCTACAT GATGATGCCGCCGCAGCAGCACCAACCTCAGCCTCCGACCATGTGGGCCCCATCCGCCGCCCAGCCTCCGCAACAACAAC ACGCTCCTCCGCAGCAGCACCAACATGCTCAGCCTTCCACTCCCGACGAGGTCCGCACCCTCTGGATCGGTGATTTGCAG TACTGGATGGACGAGAACTATCTCTACCAATGTTTCGCTCACACCGGCGAGTTGGCCACTGTTAAAGTAATCCGGAACAA GAACACGAATCAATCAGAAGGTTATGGATTTCTTGAATTTACTAGCCGTGCCGGTGCGGAGAGAATACTTCAAACATACA ATGGCACCATCATGCCGAATGGCGGGCAGAATTTCAGATTGAATTGGGCGACTTTCAGCGCGGGTGGTGAGAGGCGTCAT GATGATTCTCCTGATTACACCATATTTGTTGGAGACTTGGCTGCTGATGTGACGGACTATCACCTGACAGAAGTATTTAG AACACGGTATAACTCGGTTAAGGGGGCTAAAGTTGTGATTGATAGGCTCACTAGCCGGACAAAGGGTTATGGTTTTGTTA GGTTTGCAGATGAGAGTGAACAGGTTAGAGCCATGACTGAAATGCAAGGGGTTGTTTGTTCAACAAGACCCATGCGTATT GGACCAGCTGCTAACAAAAACCTTGGTACTGGCACTGGCACTCAGCCAAAAGCGTCATATCAGAATTCTCAAGGGCCACA GAACGAGAATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTTACGGATGACCATTTGAGACAAG TTTTTGGGCTGTATGGAGATTTAGTTCATGTGAAGATTCCACAAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGG AGCTGCGCAGAGGAGGCACTTCGGGTTTTGAATGGTACACTTTTAGGCGGACAAAATGTTCGGCTTTCGTGGGGCCGAAG TCCTTCAAACAAACAGACTCAGTCAGATCCAAGCCAGTGGAATAATAGTGCTGGCGGTGCTGGATATTATGGATATGCTC AGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGACCCCAACATGTATGCCGGTTATCCAGGATATGCAAATTAC CAACCAGCTCAGCAACAGCAGCAGCAGCCACAGCAAATGGGATACAGTTGA
Protein sequence (LotjaGi4g1v0015600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQPGGPGMAPPQQPNQQYQQQQQPYMMMPPQQHQPQPPTMWAPSAAQPPQQQHAPPQQHQHAQPSTPDEVRTLWIGDLQ YWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGGERRH DDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRI GPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADR SCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWNNSAGGAGYYGYAQGYENYGYAPAGQDPNMYAGYPGYANY QPAQQQQQQPQQMGYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 69 | 69 | - | – | |
| MobiDBLite | 12 | 30 | 19 | - | – | |
| PANTHER | 15 | 406 | 392 | 2.0E-197 | – | |
| PANTHER | 15 | 406 | 392 | 2.0E-197 | – | |
| MobiDBLite | 31 | 45 | 15 | - | – | |
| MobiDBLite | 46 | 68 | 23 | - | – | |
| SUPERFAMILY | 68 | 246 | 179 | 6.69E-37 | ||
| Gene3D | 71 | 151 | 81 | 5.0E-22 | ||
| ProSiteProfiles | 72 | 152 | 81 | 15.374 | ||
| SMART | 73 | 148 | 76 | 1.0E-13 | ||
| CDD | 73 | 153 | 81 | 1.86095E-45 | – | |
| Pfam | 74 | 139 | 66 | 7.1E-13 | ||
| CDD | 165 | 244 | 80 | 1.54118E-44 | – | |
| Gene3D | 165 | 241 | 77 | 7.6E-20 | ||
| ProSiteProfiles | 166 | 245 | 80 | 15.92 | ||
| SMART | 167 | 241 | 75 | 1.5E-17 | ||
| Pfam | 168 | 232 | 65 | 9.9E-13 | ||
| MobiDBLite | 242 | 275 | 34 | - | – | |
| MobiDBLite | 247 | 275 | 29 | - | – | |
| Gene3D | 251 | 357 | 107 | 4.4E-26 | ||
| SUPERFAMILY | 260 | 371 | 112 | 6.58E-29 | ||
| CDD | 274 | 345 | 72 | 1.63629E-37 | – | |
| ProSiteProfiles | 275 | 347 | 73 | 17.199 | ||
| SMART | 276 | 343 | 68 | 7.5E-21 | ||
| Pfam | 277 | 340 | 64 | 1.1E-16 | ||
| MobiDBLite | 343 | 363 | 21 | - | – | |
| MobiDBLite | 393 | 416 | 24 | - | – | |
| MobiDBLite | 399 | 416 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0015600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…