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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0019100 |
| Transcript ID | LotjaGi4g1v0019100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT2G31220.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q84TK1|BH010_ARATH Transcription factor bHLH10; TrEMBL-Plants: tr|C0JP25|C0JP25_LOTJA Putative basic helix-loop-helix protein BHLH14; Found in the gene: LotjaGi4g1v0019100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2400138..2404149) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTTGCTGGTGTGGAGGATCACAACAAGTGCCGTTAATGGTAGATTTTAGAATCCAAACTAATGCGTTTTCTTCTGC AATCACGTTTTGTGTGAACCATACATAATATTGTTTTCTTTTATTTTTTTAACACTTTCTTGCACCTCGTCCTATGTCTT AAATTAGTCTCAATTTCCCTTTTTAAGATATGATATCAAGGAAATTATTAAAAAAAACTCATCATCAAAATTGTTACTAT TTTCTTATACTTTACTTGTTTGAAAAAAAAAAATAGGTAGAGTATTTTTTATCATCTAAAAACAATGCAAAAACTATATT GATTATTTGTGCAAATATAGTCACTAGATTGTATTGTATAATGAGTTTTATAAAGTATTATTTTTTAAGCTATAAGTATA ATAAATATAAAAGTTATTCATATTGATAACCTTGATAAAAATATTTTAAAAAATCAATATCAACAAGGATTATGGTTACA TCACCCACGAAACTACACAATTGTTCACCATAAACTGTTTCACTTTTTCTTTACATAAATCTTCGACAATCACATAATTC GTGCTTCAAAAACTACATTTCGAACATCTAGATTAATTTTGGAAGATGTTGTTATAGTTAACCAACAACTAGTAAATCAA GGCTTTGGATTTCAAGCTATATAGTCGAATGCTGAGGAACCTAGGGGGCCTCATAGATCCACCAAATATGAATTTTGATG CTTTCAGAAAACACTTTGGAGTTCAGCTCCGACCAATAGAAAGACCTATCTACCAGAAGCTATATCATGAATGGATGAGA AAGAATGAGATCAAACACGAAGCAATAGGTGAGAAAGGATGAGATAAAAAATGGAGCTAGTTCCCAACGTATGCTATCAA CATGGTTTTTTATAGGATAACCATCACCTGCAAAGCAATGGGTGAGAAAGGATGAGATCAAACATGAAGTAAATGAGTAC TTCAAAGAAAGGAATAAAAGAACTAAAACAATGTTATAGTAACAGATCAACTCAGAAGCAGAGTTTGCAATTGCCAATCA ACTCTTTCTAAAACACTTCCAATCTATTAACACACCACGTTCCATCCTTTCATAGTGTCCCACCCCCTGTGATCCCAAAC CCGCATCTATGCAGATAAGCCCCTCTAGTCTACAACCCTCTTACTGCCACCAAATTCTAAGTCACTAATTCAGCTGGTTT TGAGGCATACCACCGGGTTGCTGCACCATTCATAAACTGAGTAATGAAAACCCTGCGATTTTGCGGACAACCAGCACCAC GATCTGACCTGAATTAGCTCGAAGGTCCTGAAAATTTCAGCTGGCTCACCCCTGAAAATCAAATTATTCCTCGCATTCCA ATTGGCCACACAACAGCAAGGCACACCGCCCTCCAACTGATGGAGTGTATTGCTCATATTATTGTGATTATTTCGGAAAA ATTCCCATGAGCTTGAGCATGTGGGCCACTGGAAGAGGAAATATGGCTGAATTGCTTGTAACTGAACGACCCCATTTTCT TCCAATTCCTATGCCTAAAAGATTAAGCTATGCTTTCTGAGATATTTGCCTTTTTTAGTACCCAACGTTCGTAACTCCCT CCACGGCTCTACCTTTTCTTTCTTTCTTTCTCACCACAAACTGTCTCTTAGAGTTTGTTGGACTCACACACCAAGAAGAG GGAATTCCAAATCCCTCTGTCTCAAAATTTCCATCATAAACTGTTGGAGTTTCTTTTCCTTATAGTATAGGTAATTCACA ACTACAATGACAATTACTTTCTTCCTTATTTAAGGTCCTCAAATTTCTAACTGTGTGCTAGAACCACCTTCAACAAACAA GATTCAAATGATCAAACCTCAAATATTATTCTGAATGTTCAAAAAGCATGCCTGCTTCTCCTGGTTGATTTGTGGTGTTT AACTAATTATTCTGTCTTTTCTTGATTTCTATTTTTTCTGGTGGGTATTTTCTGTTGTGATATTTTTCTATGCACACATA TAGTGTGTCAGTTTCTTTAATTTTGAATTCCTGATTCTGTTATTTTGTGCCAACTATTGCAGGTAAAGAATAACGAGTGC AGGAGACAAGCAAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGCAGAAGGTGTAAGCTCTCAAAAAG ATAGCTTTCCTCAAACTCTTCTTGACCCACAACCACAATCACTTATGGTTACAGAGAACACCACAAACAGCAACAACATC ATGGATAACCATTTGGTGCAAGAGGTCATTGATGCCCCTCTCTATCAGCAATCCACTTGGGACCCTAATGTTCAAGAAGT ACAAGATATGAGCTATGCTAACCATCCAGAACAACAATTTCAGCATATTGATGCACAAAACTACTGCCAAAGCTACACTC CTTCCATACTAGACCCTTCTTACCCTTCACCAGATCTCCTAAACTTTCTCCACTTGCCCACATGCTCAGCTTCATCTTTA CTCACCAATCCACCCAACATTTGCATCTCAAACCCAACTCAGAGGACACCCAATTTCCAGAACTCAATGACCTTTCTAGG AGACCTTCCAATGGGACCAGACAACACAAGTGCATCCTCAGTTCTGTATGATCCTCTATTTCATTTGAACCTGCCTCCAC AGCCTCCAGCCCTCAGAGAGCTGTTCCAATCTCTCCCCCGTGGCTACAGGTTGCCAACCAGCTCCAGGGACGATTCGCTT TTCGGTGGAGGGGATGAGATGGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTGGATTTCAATAGGGGCACAGCTTC TGTTGGCAAAGGAAGGGAAGGAAAAGGTGCCAAACCTTTTGCAACTGAGAAAGACAGAAGAGAGCAATTGAATGGAAAAT ACAAAATCTTGAGGAGTCTTATCCCTAACCCCACCAAGGTACACAGAATCTATGCATTATCTAAATAATCTGTTTCATGT TTTTCTATGAATCAAAGCTAATAGGTTGGGTTCTGTTTAAGCCTGATAGAGCCTCTGTTGTTGGTGATGCCATTGAGTAT ATAAGAGAGCTGATTAGAACAGTCAATGAGCTCAAACTATTGGTGGAGAAGAAAAGACATGAGAGGGAGAGGTGCAAGAG GCCAAAAAACGAAGAGGATGCTGAGGAAAGCTGTAACATTAAGCCTTTTGGGGATCCAGATGGATACATAAGGACCTCAT GGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGAATCATCGATGATGATGTCACAATCAAATTCTTCCAGAGG AAGAAGATTAACTGCCTGCTATTTGTGTCAAAGGTTCTGGATGAACTTCAGTTGGAACTTCACCATCTTGCAGGTGGACA TGTTGGTGAATATTGGAGTTTCTTGTTCAATAGCAAGGTTGGTGTTTTTCTAGACCCAATACCCATAGAGTGATTAAAAG CTTTTTGAATAGAATTATCATATTGTCATAATTGCATATTCAACAGCGACCTGTTTCACTGACGCAGGTAATTGAAGGTT CATCAGTCTATGCAAGTGCCATAGCCAACAGGGTGATTGATGTTTTGGACAGTCAATACGCTGCAGCAGTTCCACAGACA AGTAGCTATTAGAGCCGTGGAAGATAGTGTCAATATCAGGAACAAAAGACATGCATGAAACTATAACATATACTGGTAGT AATAATAATAGTAGTAACAAGTTCCTGAGGACACTCAGGTGATAGTGAGATTATAAAGTTTAACAGTTTCTGACTTTCTG GTTCAAAATATAGTTTCTTCAAGTAGTACCAAGTCCTTTTTGGGATTATGCCATCTACCATTTGTCCTCTTTTCTTTCTT TTTACATACATTTTCCATTGCTATTTTAGTTTGGTTTAGCAGGCATTATGCCAGAACAAGGACATGAAGGCATTATTTTT CTCCTCTAGTTTGGGTCATACTTTGCTGTTTCGATTTCCATGAGCAGTTTGTCATTAATATGAAATCTCAAAGCAGCAAA AATACAACTTAT
CDS sequence (LotjaGi4g1v0019100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTTCTATGAATCAAAGCTAATAGGTTGGGTTCTGTTTAAGCCTGATAGAGCCTCTGTTGTTGGTGATGCCATTGA GTATATAAGAGAGCTGATTAGAACAGTCAATGAGCTCAAACTATTGGTGGAGAAGAAAAGACATGAGAGGGAGAGGTGCA AGAGGCCAAAAAACGAAGAGGATGCTGAGGAAAGCTGTAACATTAAGCCTTTTGGGGATCCAGATGGATACATAAGGACC TCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGAATCATCGATGATGATGTCACAATCAAATTCTTCCA GAGGAAGAAGATTAACTGCCTGCTATTTGTGTCAAAGGTTCTGGATGAACTTCAGTTGGAACTTCACCATCTTGCAGGTG GACATGTTGGTGAATATTGGAGTTTCTTGTTCAATAGCAAGGTAATTGAAGGTTCATCAGTCTATGCAAGTGCCATAGCC AACAGGGTGATTGATGTTTTGGACAGTCAATACGCTGCAGCAGTTCCACAGACAAGTAGCTATTAG
Protein sequence (LotjaGi4g1v0019100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFFYESKLIGWVLFKPDRASVVGDAIEYIRELIRTVNELKLLVEKKRHERERCKRPKNEEDAEESCNIKPFGDPDGYIRT SWLQRKSKDSEVDVRIIDDDVTIKFFQRKKINCLLFVSKVLDELQLELHHLAGGHVGEYWSFLFNSKVIEGSSVYASAIA NRVIDVLDSQYAAAVPQTSSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 178 | 164 | 3.8E-89 | – | |
| Coils | 29 | 49 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0019100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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