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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0024500 |
| Transcript ID | LotjaGi4g1v0024500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aldolase-type TIM barrel; TAIR: AT3G14420.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|P51373|YCF23_PORPU Uncharacterized protein ycf23; TrEMBL-Plants: tr|I3S3W7|I3S3W7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0024500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3030878..3036023) extracted from Lotus japonicus Gifu genome v1.2.
TCATATATTTTTCTTCTTTTCTTATTACATGACTTATCCTATTTTTCATTAGTGTGTCTTTTTACTCTTATATTTTTTAG GTGTTGGATGGAAATGAGGTGTGAAAGATGATTTTCATTGTAAGATTTGCATGTTACTCCTATCGAGGCTCTCTTGGGCC TTGGGATGCCAACAACATTGGTAATGTTTTTTTTTTCCCACACAGCAACTTACCTCACTAGTGAGTAGTGACCCTCAATA GGAAAATATCTCATGAACCTGACAGTTTAATCTTGCCACCATCTTTTCTTATCTCTTCTGTTCTCTCTCTCTCTCTTGCT TGCAGTGTTCCTCCTCACTCCAACCTTGCTTGCCTCTGAACTGATACCATGCATTCCTTAACATGCACCCCAGTTTCATC TCCTTCTCACACCCTTCTAAAGCCAAACAACAACAACCCTTTATTGGGTTCAACTTGGAGGCCTTGTCCACCTTTGAAAA GAAGAGCCTGCTTCACTACCAGAGCTCTATTGTCATCCACCAAAGAAACTGTTTTGAAGGATTTCCAGGAACGAAGAGCT CTCAAGGTAAAGCAAAACCCAAATTTCCCTACTCTCTGTTCTATCTGCTCATTTTGTTGACTTTCTTCATTGATATGAAT TGTAATGTTTCTTAAGGTCAATCCTGTTGAGAACAATGGAAAGTCACATCTTACCTTCACTAATGACTACTATATGATAT GTTGACTGATTTTAGAAAACATTTTGAATTTTTATTTTCACGGATGATTACCTGTATTTTTTTTTCTGAACAAAATGGGG AAATTAATTGACAGCAATCAACAAATTGCACTGAAATATACAAGTGAGTTGTGACACAAGAGAATTTCATGTCCTGCAAG TCATGGAAACAAAGGAGATATGCCAAATACTAAACAGAGAATTGCTTGTTTTTTTCCATTTGGTTGAATTCATTCACTAT AATATAATTCTATTTATACTATATGTCTTAACAAACCTTTGGTTCTTTTTGAAGATTATCTCAGGCTTGCATAATTTTGA TAAAGACAATGTTGCCTCTGTTGTCACTGCTGCAGACAAGGTTCTTTACTTCATTCATCTTTCATTTTATCTATGACCCC CAACTTCATCCATGCAATTCTTTTGTTTCTGATCATGGTTATAAACTGCGGTTGTGGCATTGTAAAATTGCGGAATAGTA GATAAATGCAGGTTGATGTTGATGCAGCGGCAATTGTGGTCGCGGTGCATGCTGCTATTTAAAACCCTGTATCTGATTGA TGACCAAGGAACTGTGAATATGAATTATTCCCCCTCATTATCAGACTCTTGAGGTTTAGAATGATCTTTTTTAATTTGAT AAGCTAGATTTAGAATGATCTTGTATCTGGTGTTGGGAATTCTCTTGCATCTTCATGAATTTTTAATTGAAGTCTTAGAC CATATTCTAAATTATATTTTATTTTGGTTTCTTTCTTCTGTAAAATACTTGACAGTACAAACTAACATACTAATGCTAAT GAGAATTTCTTGTAATGCCCTGTGCTTACAGGGGGGAGCGACTCACGTGGATATAGCATGTGACCCGGAGTTGGTCAAGC TAGCTATCAGTTTAACTTCTTGTCCGGTATATTCATGATTTTCTTATGGATGTCTTGACCAATTATAGTGAATTAAGGTT GATGTTTATTATAGTAATGGTTCTTGCAGGTTTGTGTTTCTTCTGTAGATCCTGCAACATTCCCAGCTGCAGTTGAAGCA GGAGCACTAATGGTTCGATCTTTTGTCTCGTTCCATTTTCCATTCTCAGTTCCAAGTTCATATTGTAGTCATCCCATTGG CATAACCATGAATGATATTAGAATGGACGTTGTAAGATTTTTCTTGGCATGATTAATGGCATTGGCAGGTTGAGATTGGA AACTACGATTCATTCTATGAGAAGGGAGTAGTTTTTACTCCAGAGCAGGTAAAGAGTGCTTTTCACTTAGAAACTTTGTC ACTTAGAATGTGTGATGTTTGTCAACCGCCACATATTACACCAGAAGAGTTAATTTTGGACTTTCAACTAGTTCTTTCTG AATTTCTCTGAATAACTCAAACAGTACTAATTAGCTTGCTGTTACTAATTTTAATGGAAGACGTATAGAAGCTTGTAACT GGCTTATTTTGGTTTTTCATGATCAACCTTTCTGTGCAGATTCTAATACTAACAAAGGAAACAAGGAGGCTACTTCCTTC TATCGCCTTGTCTGTTACAGTTCCTCACACACTAAGCCTCCCTGATCAGGTTAGAAGCAGCAATTTCACTTTCCTAATGC ACAATATGCTGATGCTTACCTGTGTATATAAATAAACGAAATCTAAAATCTTAACAGGTCAAGCTCGCAGAGTTACTGGA ACAAGAAGGCGTGGATATTATTCAAACCGAGGGAGGAAAATGTTCCAATCCTACAAAGTCTGGTATACTGGGTTTGATTG AGAAGGTAACTAGAAAAATATGTTCAGTTTACTTATGCTTTTTCCCCTGATTGCCTACATTCTCAATACTTGAAATTCAA GAATGTAAGGCTAAAAAAGGCTGGTTGTGGCAATACAAATGGTTTAAAACAGCCAATGAAGTTTTCCAGGAGATTTGCTA GATGATTGAGTGTCTCATTGACATTCCAATTTCCACATTATAAATCAACATGTTATAGTCAGAAACAATATTTAGACAAC TCAACTTGATATGCCGGCTATGTTTATGTGCTTGAATGTATTTACTCGTTTGCCTTCCAAAGTAGCTCATTTATTTCTGG TGAGTGTGGTTTGATCCAAAAATGCCTCACGACATTCTTCGACTTGTACACACTCAATTATATACTACGATTTTGGTTGT AAACACAATGATGTGGGACTTCTCTTTTCAACACTCCCCATCAAGTCTAATTGTATTAGTCGAGTTAGACTTGCTTTTGC TTGGGTTTGTACTCAAATGAAGCCTTGAAGGTCGTTAGTGTGGACTTGTGTTCCTTCCGTCAGAACTTGATTCTCAAGGC CCCATGGTTTTTTTTAGTTGATAGTAGCATTTTTTCACTGAGCCCCATCTATTTTTGTGTTAACTCTTTATTTTCCTTTT TACTCCCTTTTTTTGGATCATGGGCTATGAGGCCATTTGAACTTTGATACCACTTGTATAGTATTTGAATAGTACAAAAT GGCTTTGGTAAATAGTTAAACGGAAACAAGCCTGAAAGAACTTGGTGTTTCTCCACACTTTCACAAATGCCACACCTAAT GCCTATTTGTTAAGCTTTGTGCACGCCATTAGATTTTCTAGATACATCCAATTAATCCAATTAATACAACTAAAATCTTC TATACTAGGACAGAAAGCACTAGGAAATTCTAGATTAGGTTGCCATTTTCATTCTTGTGTTTTATAGCTATATCTAGTTA ATTCTAGAAATTTTATAGCATCTTTAATCAATGTAATTACACCTCTGCCTTTCAGAGTAGCTCATTTGGTTGTTTTTTAT TTTCTCTATAGAAAAAGTCCATGCTGAAGCTATTATTTCACCCCTGAAAGCAATAAAGAATTCTCTTCATTTATGTTAAT TAAAGATCCCCTGCTGTTGGATTTCAACAAAAGGAGCAATGATTGCTGCATTGATTAATCATGGTTTCTTGTAACAAACC TTTCATTAAATTATGAAAATTCTAATCACTGGTCATTATAGGCAACACCAACTTTAGCAGCAGCATATTCTATATCGCGA GCTGTTAAGATACCTGTCATGTGCTCATCTGGGCTAAGTGCTGTCACAGCACCTATGGCTATCACTGCTGGAGCTGCTGG AGTGGTATACATTTTTATTAAAAAAATTCCCAATTTACTATTTATAGCATTCACAGACCTACTTAAACTAGTTGAAATTC ACCTTTCTAGAGACATGTTATTGATCAGTGACTCAGTGTGTTTCCTGATCACAGGGTGTGGGCTCTGCTGTTAATAGACT AAATGATGTGGTTGCCATGATTGCTGAGGTCAGAAGCATTGCTAATTCATTGAAGACACCCTTTCAGATATGCCCTGCAA CACATGAAGTGGAAATTAACAGACAGTAGTATGAAGGTGGTGTAGGTAGTGAATAAAATTTGTGAAGAACATTTGGATCC TTCCTTAAGCATGACAACTTCTAGGATCCACCTTTCTTCTTCCTTTCTATTGTAGAATTTATTCTAATCTGAAAAGAGAG TGTCTATTTGGAAACTTGTTGCACCAGACATTTGTTACTAAACATCACTCTCATATTGAGTTTTTTTAGAATCTCATAAA TTCAGGATATTTTCTCAAAATTATAGGTCAATTTCTTCAAAACAGTACTGATTACCTTCTCATAATTCTCACAAGGCCTT TACCTTCTTTCGACACCATTTGTTACTTGCATTATTGCTCCATCTCCAAACCTTCTTCACAATAGTTTGGGACATTTGAG TTTTTCTAAGCATCAAAAGATGGTTTGTGATCTTTCCTCTTTTCTAGTTTTAATAGCGAGTCCTCTCAATTAGATAAATA ACCAGCCCCTAGTATCTTAAGCGTGTTCATGTTAGGTCGTGGCCAGACAAATCTAACCAAATCACTTGGAAGGGTGTTGA TTGAGGAGGAACGCCGAAACTCCAGTAAAGGGGAGTGGTGAGATGATAATCTTCATGGTGCTCTGTTGTCCATCGTGCCC AGGAGGGGTCCCTGCGATGATACTCTGTCGCTCGAATTAGAACATGGGTTTAAGGGATTGAGAAATGAGATAGATTATAT GTACCTTATGTTCTCCAAGCCTTTAGATTTTATAGAACTTGGGATTACGTGGTTCGAGACGGTTATGAGTGCTTAGCACT TTCTCGAGCTTCGTACCATCGTCTTGTTCGCTCGTTCACAACTACTTGGGTTGGTCGGGCGGGGTTGATCGTCCTTATAA TTGATTGGGTGAGGAGACAACAGTCAACCCAGGGGTGATCGGATGGAGCGTCTCGCAGAACCGTTTTCATTTATATTTGC TTTAGTTAATTGTGACATTTGGGGTCAAAGGCGTTTGTTGTCTTTGGATTCAATAGTTTGTAACCTTTAATGATAATTTT TTATGTTGTACTTGGTTATATCTGAC
CDS sequence (LotjaGi4g1v0024500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTCCTTAACATGCACCCCAGTTTCATCTCCTTCTCACACCCTTCTAAAGCCAAACAACAACAACCCTTTATTGGG TTCAACTTGGAGGCCTTGTCCACCTTTGAAAAGAAGAGCCTGCTTCACTACCAGAGCTCTATTGTCATCCACCAAAGAAA CTGTTTTGAAGGATTTCCAGGAACGAAGAGCTCTCAAGATTATCTCAGGCTTGCATAATTTTGATAAAGACAATGTTGCC TCTGTTGTCACTGCTGCAGACAAGGGGGGAGCGACTCACGTGGATATAGCATGTGACCCGGAGTTGGTCAAGCTAGCTAT CAGTTTAACTTCTTGTCCGGTTTGTGTTTCTTCTGTAGATCCTGCAACATTCCCAGCTGCAGTTGAAGCAGGAGCACTAA TGGTTGAGATTGGAAACTACGATTCATTCTATGAGAAGGGAGTAGTTTTTACTCCAGAGCAGATTCTAATACTAACAAAG GAAACAAGGAGGCTACTTCCTTCTATCGCCTTGTCTGTTACAGTTCCTCACACACTAAGCCTCCCTGATCAGGTCAAGCT CGCAGAGTTACTGGAACAAGAAGGCGTGGATATTATTCAAACCGAGGGAGGAAAATGTTCCAATCCTACAAAGTCTGGTA TACTGGGTTTGATTGAGAAGGCAACACCAACTTTAGCAGCAGCATATTCTATATCGCGAGCTGTTAAGATACCTGTCATG TGCTCATCTGGGCTAAGTGCTGTCACAGCACCTATGGCTATCACTGCTGGAGCTGCTGGAGTGGGTGTGGGCTCTGCTGT TAATAGACTAAATGATGTGGTTGCCATGATTGCTGAGGTCAGAAGCATTGCTAATTCATTGAAGACACCCTTTCAGATAT GCCCTGCAACACATGAAGTGGAAATTAACAGACAGTAG
Protein sequence (LotjaGi4g1v0024500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHSLTCTPVSSPSHTLLKPNNNNPLLGSTWRPCPPLKRRACFTTRALLSSTKETVLKDFQERRALKIISGLHNFDKDNVA SVVTAADKGGATHVDIACDPELVKLAISLTSCPVCVSSVDPATFPAAVEAGALMVEIGNYDSFYEKGVVFTPEQILILTK ETRRLLPSIALSVTVPHTLSLPDQVKLAELLEQEGVDIIQTEGGKCSNPTKSGILGLIEKATPTLAAAYSISRAVKIPVM CSSGLSAVTAPMAITAGAAGVGVGSAVNRLNDVVAMIAEVRSIANSLKTPFQICPATHEVEINRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 11 | 294 | 284 | 2.5E-157 | – | |
| PANTHER | 11 | 294 | 284 | 2.5E-157 | ||
| Pfam | 54 | 288 | 235 | 3.5E-86 | ||
| SUPERFAMILY | 73 | 269 | 197 | 2.09E-18 | – | |
| Gene3D | 76 | 275 | 200 | 2.9E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi4g1v0024500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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