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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0033800 |
| Transcript ID | LotjaGi4g1v0033800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA polymerase III PolC-type; TAIR: AT2G13840.1 Polymerase/histidinol phosphatase-like protein; Swiss-Prot: sp|O54453|RNAAM_SALTY 5'-3' exoribonuclease; TrEMBL-Plants: tr|A0A072UN52|A0A072UN52_MEDTR Polymerase/histidinol phosphatase-like protein; Found in the gene: LotjaGi4g1v0033800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4110287..4113761) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAATTGCCCTTCAGTATAAGGGTAAGTAAGTAGCCCTCTCTCAATTGAGTCAATTCTTTACCCAATTCTCTTCTCTC TCTCTCTCTATATATATATATATATATATATATATCCCTGTTCTCTCTATATATATTTCATTATTCTGTGTTAGCAGATA GGTTAAGGGCATGCACCTTAACAAATTCACCCTAATAGCTTAAGGACAAAAAAAACCAAAAATTCCTTCAAAAATTCAAT CTTTTCTGCACTGCGTTGCGCAACAAGCTCAATCCAGTGATGGGTGATGGTTGCACGGTTCAGGGCATGAACAATTCGAA CAAGGATAAGAAAAAGAAGAACAAGAACAAGAACAGGGGTGGTAGTAGCAGTAGCAAGAAGAAGATGACCCATGAGCAGC TTCTTGCCTTCAAGTTTGTGACTGAATGGGTGTTCTTGGATCAACCCTCTCCTTCTTCTGCTTCTTCTTGTGTTGTGGAT GATTTTGGGGTGCAGAAAGCTATGGGAAGAGGTGGAGAGAAGGTAACCTTTGAATTGCATTCACACTCCAAATGCAGTGA TGGGTTCTTGTCCCCTACTAAGCTTGTTGAGAGAGCTCACATCAATGGCGTAAGTTTCAATCTTCCTTTGCTTTGATAAG ATTGTTCTGTTTTTTTTTATTGATAATTTAAAGTTGGGTTTTGATTCTTAAGTCTGATTCTATTATTGCATATAATTTGT TTGAGTTAGTCACTTTTCAATTAAAGTTGCATGGATTAGGACTACATTAGGGGTGTGAGACTGTTTAATCCTTAACAATG AGTATTTGGTTGTGTCAGTATTTCATTGTGTTAGTATTAACCTTTCAATTTTTGCCAATTTTTTGTATTATCTGCAAATA AGAATTCAGACCATGGATCAATGTTTATAGATTCTTGATGGTTTTCTTGGTTTGAAAAAACAACAGGCTCATGTATGCTT GACTTCTCATCAGAAATGTAAACCATTACTTTGAAACAAGTGCATTTTGAATTGAGATGTCTTCTAATATTCCTTTTATT AGTATTAGGATTATGAGGTTACTTTAGAGATGGTATGAGCATGGCTGATGGAAAATTAACAACATTGAAGAGGCCTTTAA AATGAGTGCAGCTGAAATTGAAGATCCATTTCAATGTTTAAGGATTGCATTTTCTAATTAATTTGAAATCCCTTCTAAAC ATGATGTTGAAATATGATTTCCTAAGGCATAAATTTTGAATAGGATTTCCATGTTTAGTGTTAGGCTCAATTTTAATTAA TACCATTTGCTCATAACAGGTGAAAGTTCTTGCTCTGACAGATCATGACACTATGGCAGGCATCCCTGAGGCTGTAGAGG CAGCTCGGAAATACGGCATCAAGATAATGCCTGGTGTTGAAATTAGTACAATATTTTATCCGGGGTAATTTTTAAATTTC AGATTCTTTATACTTGTTAATTGGATTAGCACTAATCTCAAGTTACTTGTGTTTAAACTAAATTGTCTTAATCAATTGCG TTTAACACCTTTTATCTCCAATAATTCTGATGTGTGCAATTTTCACTTGCAGTGGAGACTCTGAAGCAGAGGAACCAGTT CACATTTTAGCATATTACAGCAGTATTGGACCATCAAGGTTTGAGGAGCTGGACAAGTTTTTATCAAATATAAGGGAGGG ACGTTATCTTCGAGCAAAGAACATGGTCTTAAAACTGAACAAACTCAAACTGCCTCTTAAGTGGGAGCATGTTTGCCGAA TCGCAGGCAAAGGGGTCGCCCCAGGAAGGCTTCATGTTGCCCGTGCTATGGTTGAGGCAGGTTGTGTGGAAAATCTCAAA CAGGCATTTGCTCGGTATCTTTTTGATGGTGGACCCGCGTACTCCACGTAATATTCTGTTGCTTGCTCTTCTTGTTTGTT GTAACTATATGTATTCTTGAGAAAAATGGTTAAGGTTATGACTTCTGTGTTTCAGGGGAAGTGAACCTGTGGTAGAGGAA GCAATAAAAATGATTTGTCATACTGGGGGTGTTGCTGTTCTGGCTCATCCATGGGCATTGAAAAATCCGGTTCCAATTGT CAAGAGGTTAAAAGAAGCTGGCCTTCATGGGATGGAGGTTTACAAAAGTGATGGAAGGTTGGCAGGTACATGCTCAATTG CTAATTTACTCATTTGTTTAATTAATTGCAAAATGATGTTATTACCTAGTTTTTAGACTTTACAATTATCAACCTCCTTA TAAACCAAAAGTAGGGTAGATCTACTTCTGTCAATTGTCCTACGAATTTGAATCCTAATTTATTAAACATATGTTGGAAA TACTAGTGTTCAGAGTGCACTGCGTACCGCCCGTCTTCCACCTGAACCTATCAAATGTGAGATCATCAAATCACCAAGCT AATTTTATAATTATGAATCATATATTACATCATACTGTGAAAGCATGTGGCTGTGGCTATCCATATGTAGTCATTAAATT AACAATATGTGCTGTGAAAGCATTCATTTACTGTTAAATCCCCCCAACTAGATCTCCTGAGGTGAAATTGTGTGATGGGA AATTATATGATCAAGTACAAATAGATGTAAGATCTTATTATTAATTTGTTCTTGCATATCAGCATTAATTTTTGTTGTGC AGCTTATAGTGACCTGGCTGACACCTACGGGCTTTTAAAGATCGGAGGGTCAGATTATCACGCCAGAGGAGGCCACAATG AATCTGAACTAGGAAGTGTGAACCTTCCAGTACAAGTGTTGCATGATTTCCTCAAGGTAGCTAGGCCTATCTGGTGCAAT GCCATCAGGGAAATATTGGAGTGTTATGCTGAGGAACCTTCTGATTCTAACCTAGCCACAATTACAAGGTTTGGGAGAAC CCGGAATTTTAAGGGAGGTTCACCCTGCGGGCAGGACTTGATTGATCACTGTTTACCTGTCTGGTTAACTAGCCAGGAGA TGGAAAATGAAGAGTTTGAAGCTGTCAAGTTGAAGCTTTCAAATGTTTCTGCAACTCAGGGAGGAATTCAGGTTCTCATA GAGACTAAATAGCAGTTTATGCTAGCAGATTCCCAGTATGTCTGGTCAGCCAATGTTGATGTCTATTGATTTTTGTTTCT TTTTTTTTTAGGAAATTTTCTATTATCATTTGAGCAATTATTCTCATATTATTGTTTTATCCTCTATCACTGATGAGTTT TTTTCTTTCGAATTTTTTGTTTGTTTGTTATTTCTTAACACCAATGGCTAGTAAAGACTGTATGTCCAAACTCCAAAGGT TGAAACAGGAGGGAGTGTCTTTCTTCAATGCTTGATACATGTTTCAAACTTTGGATGCTCTTCCTTCTCTAAGTAGCTAC TAGTATATGAGATCCATTCGGTGTTTGTGTTAAAACAATTAATTATAATTAAATAAATAAATTTAAGAAGTTTTAAAGAA TAATATTGAAAAATTTATACAAATATGATATATTC
CDS sequence (LotjaGi4g1v0033800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATGGTTGCACGGTTCAGGGCATGAACAATTCGAACAAGGATAAGAAAAAGAAGAACAAGAACAAGAACAGGGG TGGTAGTAGCAGTAGCAAGAAGAAGATGACCCATGAGCAGCTTCTTGCCTTCAAGTTTGTGACTGAATGGGTGTTCTTGG ATCAACCCTCTCCTTCTTCTGCTTCTTCTTGTGTTGTGGATGATTTTGGGGTGCAGAAAGCTATGGGAAGAGGTGGAGAG AAGGTAACCTTTGAATTGCATTCACACTCCAAATGCAGTGATGGGTTCTTGTCCCCTACTAAGCTTGTTGAGAGAGCTCA CATCAATGGCGTGAAAGTTCTTGCTCTGACAGATCATGACACTATGGCAGGCATCCCTGAGGCTGTAGAGGCAGCTCGGA AATACGGCATCAAGATAATGCCTGGTGTTGAAATTAGTACAATATTTTATCCGGGTGGAGACTCTGAAGCAGAGGAACCA GTTCACATTTTAGCATATTACAGCAGTATTGGACCATCAAGGTTTGAGGAGCTGGACAAGTTTTTATCAAATATAAGGGA GGGACGTTATCTTCGAGCAAAGAACATGGTCTTAAAACTGAACAAACTCAAACTGCCTCTTAAGTGGGAGCATGTTTGCC GAATCGCAGGCAAAGGGGTCGCCCCAGGAAGGCTTCATGTTGCCCGTGCTATGGTTGAGGCAGGTTGTGTGGAAAATCTC AAACAGGCATTTGCTCGGTATCTTTTTGATGGTGGACCCGCGTACTCCACGGGAAGTGAACCTGTGGTAGAGGAAGCAAT AAAAATGATTTGTCATACTGGGGGTGTTGCTGTTCTGGCTCATCCATGGGCATTGAAAAATCCGGTTCCAATTGTCAAGA GGTTAAAAGAAGCTGGCCTTCATGGGATGGAGGTTTACAAAAGTGATGGAAGGTTGGCAGCTTATAGTGACCTGGCTGAC ACCTACGGGCTTTTAAAGATCGGAGGGTCAGATTATCACGCCAGAGGAGGCCACAATGAATCTGAACTAGGAAGTGTGAA CCTTCCAGTACAAGTGTTGCATGATTTCCTCAAGGTAGCTAGGCCTATCTGGTGCAATGCCATCAGGGAAATATTGGAGT GTTATGCTGAGGAACCTTCTGATTCTAACCTAGCCACAATTACAAGGTTTGGGAGAACCCGGAATTTTAAGGGAGGTTCA CCCTGCGGGCAGGACTTGATTGATCACTGTTTACCTGTCTGGTTAACTAGCCAGGAGATGGAAAATGAAGAGTTTGAAGC TGTCAAGTTGAAGCTTTCAAATGTTTCTGCAACTCAGGGAGGAATTCAGGTTCTCATAGAGACTAAATAG
Protein sequence (LotjaGi4g1v0033800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDGCTVQGMNNSNKDKKKKNKNKNRGGSSSSKKKMTHEQLLAFKFVTEWVFLDQPSPSSASSCVVDDFGVQKAMGRGGE KVTFELHSHSKCSDGFLSPTKLVERAHINGVKVLALTDHDTMAGIPEAVEAARKYGIKIMPGVEISTIFYPGGDSEAEEP VHILAYYSSIGPSRFEELDKFLSNIREGRYLRAKNMVLKLNKLKLPLKWEHVCRIAGKGVAPGRLHVARAMVEAGCVENL KQAFARYLFDGGPAYSTGSEPVVEEAIKMICHTGGVAVLAHPWALKNPVPIVKRLKEAGLHGMEVYKSDGRLAAYSDLAD TYGLLKIGGSDYHARGGHNESELGSVNLPVQVLHDFLKVARPIWCNAIREILECYAEEPSDSNLATITRFGRTRNFKGGS PCGQDLIDHCLPVWLTSQEMENEEFEAVKLKLSNVSATQGGIQVLIETK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| MobiDBLite | 17 | 31 | 15 | - | – | |
| PANTHER | 26 | 435 | 410 | 2.0E-164 | – | |
| PANTHER | 26 | 435 | 410 | 2.0E-164 | – | |
| SMART | 84 | 149 | 66 | 4.0E-24 | ||
| SUPERFAMILY | 84 | 338 | 255 | 6.28E-40 | ||
| Gene3D | 85 | 333 | 249 | 6.5E-72 | – | |
| Pfam | 85 | 148 | 64 | 9.0E-12 | ||
| CDD | 86 | 333 | 248 | 3.89233E-49 | – | |
| Gene3D | 187 | 259 | 73 | 6.5E-72 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi4g1v0033800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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