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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0034600 |
| Transcript ID | LotjaGi4g1v0034600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/arginine rich splicing factor, putative; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q9FMG4|SC35_ARATH Serine/arginine-rich splicing factor SC35; TrEMBL-Plants: tr|V7CLP4|V7CLP4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0034600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4204155..4208048) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAAGATTCAAGAAGGTTCTGCAGCCACAAACCCTAATCACACTCTCTCTATCTCTTTTTATCTTCTCTCATTCTC CATTCTCACACTCCCTCTCTCTGCAATCCGCAACCATGTCTCACTTCGGAAGGTCCGGTCCCCCTGACATCACCGACACC TACTCCCTCCTCGTTCTCAACATCACCTTCCGTAAGCTCTCTCTTCCTCTTTCTCTCCGATTTTCAATTCAATTTCTCCT ATTGCGATTCCTTAACCCTAACCCTAACCCTAACCCTAATTTCGGTTCTTATTTTGTAGGCACAACTGCTGATGACTTGT TCCCTCTCTTCGATAAGTATGGGAAAGTTGTCGACATCTTCATCCCCAAAGATCGAAGGTACTGTATTTTCTCGATTTCC TTGCTTTTTTCGTTAATGGGTCGATTTGATTATTCAATATTATTCAATATTTGATTGAAAGTTTCGATTTTTATTTTTTG AAGGACTGGGGAGTCGAGGGGTTTCGCGTTTGTGCGTTACAAGTATGCTGATGAGGCTTCAAAGGCTGTTGATAGGCTTG ATGGTATGCTTCTTCATCTCATCATGTCTTAGATTTTGAATAAGGATTTATTTTTGATTATTAATTTTGGTAAAATTCTT CAATTTTCAGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCTAAGTATGGGCCTAATGCTGAGAGGATGTA AGTTGTTTCTTGTCTTGTGCCATTTGTATGTTTGATTCTGATATTATATATTGGCTCCTTTTCAATTTTTAACATTTACT TTGATTTCTCTGTTTATTTTTGTTTGATAAGATATAATTGCATAGCCTTCTAGGATAGAATTTTTCGATACCAAAGGATT CTTCTTTTTGTTCATTTTTCTCGTGGTGTTGTAACCTTTTTATTCTCATGCACTCGTCCCTCTGTTGCTGACTTTAGTTT CTTGCATTTGCAGTCACAAAGGTAGAATTATTGAATCAGAGGAAAGAGCTAAGCAGGGGTCAAGGAGCCGTAGCCCCAGG AGAAGGTATGCATGTGCTGTTTTAGTAGCCCCAGGAGAATTTTGGAAGTTGAAAGCACCAATTTCGAATAGTAGAACTTG GGCAGTGATGTATCAGTTACACGCAATTTGTTCATTTCTGTCGCTATGTTTCAGATGGACACAAATTTTATAGCTGAAAC TATCTTTGATCTTTGGAAAATTCATTTCTTCATTGAATGTGTTCATTTTTGTTCCATCAAGCTGTTTAGTATTGTCTATT CTGCACTATATGTTAATGTTATTTTCATTTAAGCATCATAACTTGTTGAACCCGACGAATTTGTAGAGTACTAATTTAGG TAGCCTCTGTGTGGCACCATGTTTATAGTTGACGTCACCTGATTCCTCTGTTGTTACTTTTGACGAAAGAATTATTCTTT TATGCTAATTTTGGACTTGCTTTGGTTAATGTCTTATTCCTCAACCATCAGTATGATTGAAATAGACTGTTGATACAGAT CAGTATGATTGGCACCATTCTTATGTATTCATTAATGCCTGAATATTTGCAGGCATCGTGATGATCACAGATCCAGCAGA GACAGGGATTACAGGAGGAGAAGCCGCAGCAGAAGTTATGATAAGTATGAACGTGGTGATAGGCACCGTGGGAGAGACAG GGATTATCGTCGCCGAAGCAGGAGCCGCAGTGCCAGTCTGGATTACAAAGGTCGTGGAAGGGGGCGTTATGATGATGAGC CTAGTAGAAGCCGGAGCAGATCAGTGGATAGGTTCTCATTCATTGATACCCAGCTCTTTCAACTGTGATTGTTTACTTAC AAGATCATCATAATTATTATTTAACTTGTCATTCATTCCTACACAGCCGCTCCCCTGCACGCCGCAGTCCTAGTCCTCGA AGAAGTCCTTCCCCTAAGAGGAGTGTTTCCCCTAAAAGGAGCACTTCTCCCCGGAAAAGTCCACGGGGTGAAAGTCCTGA TAATCGTAGCCGTGATGGACGGTCTCCTACACCTCGCAGTGTCTCACCACGTGGCCGCCCTGTTGCTTCGCGAAGCCCAT CCCCTCGAAAGTCAAATGGTGATGTAAGTAATGTTTGTCTCGCTAAAAAGTTGCCAGATTTGTAGTAAGAATTCCACTCT CTTCTACCTTTTGTAACTTGTCAATTCTCTTCTCTTGCAGGAATAAACTGTTTTTAATGAAAAATTCCAGAGACGCCTTG ACTAGTGTACCTGTTGCTGTTTTGCTAGTATTGGATCATTTGGTCAATGTGAATGGTCTTATCAGTCATTGGACGGTTTT ATGATCTAAGTGCAGTTTGGTAGGGTCAGACTTCCTTGGTGTTTGAATGTTTTTATATTTGGACCTATTATGTCGTCTAT TTTAGTATTTGGTAATCATTGGACCATGTAGTTGATAAATTAACTTTTCAGTCTGAGGAATTTTGCCATTTCAGTTTTAT TCTAGTGTCTGCACTTTTCTCCATTTTGTTATGTAGTAGGAAGGATGGTTGTGGTCTAGTTAAAGCTCAGTTAATTTATG ATGAACAACTTATTGGGTTTTATAGTTATGATCGGGAAATGTGGTGGGGCCTGATAGGCGCATGTTGACATTGTTGCTGT TGATGCTGTTTCTATGTCATTGATGATTGGTCGTGAATTTGATGCCTGGTTGCAAGAGTATGCTGGTTTTAGGACTGATT CTTTTACCAGTGTGCTGCTTAGAAAGGCAATTAATTGACTTGGTTTTTTCCTGATTGATCTGATTTTTGGTAAGCTTTTT TGTTTACTTTCTTATTTCTTCATAAATCCCTCATGACCTCTGGGAATGCTGATCTTTTGATCTAGTAACCGTGATTGGTA TAAAAATAGTCCTGAAAGAGATTTGTGATGCTGAGATGGACAAGTTGAACGTATTTTGACGTGTAGCTGATGCATCATAG GAGTGGGACCTGTCATATGTTGAATCAGATGGTGATAATATGAACCTAAATTGCTGGTGTTATTTTGAATCTCCGTGAAA GTGACAATGGTAAAACTTTTCTAGTTACTTTTTTAGGGATTATACTGGATACTTGTTTGACATTGATCTTTCAAGATTAT AACATCTGCTACTTAATGTAGTGAGATATGTTTGTTGTAGCACAGTGCTCCTTGACTGTAGCTGTGAGGTGATAGCTGGT CCATCTTTTATATGAAATACGTGTGTTCGTGAATAGTTCGAAGAATTAGCAAATTACTGTAGCTGACTGTTGCTGCCCTT TTTGCTGGGTCGGGTTGGCAATGGTATTAGCAGCTGGTACTGATGATGCTGTCTAGCTGTGCTGATTTTCTGTTGATTTC AAAGCCGCCTGACAATTCTTTTCACTATTTAAGCTCGTGATTGTTTTTTTAGTTTCAGTTTTAGGCTTTTAGCTATTCAC ACATTTATTCTTATGACAAGATTTATATATTTTTGCTTCAACATTGTGACACGATTTGTGGTGTGGTTACTGTTATGCAA CTTAATTAATAACCTATGTGCATTAGAGATGTGGTCTCTTGAAGTTTCCTTAAGACTGATGAATCAAATGATTCATCTGG ATTATTGGTATTTCTTGTTTTAAGTCCAGCTGTTTGTTAACGATTGAATCCTTGCTGCTAATGCCTGCAGAACTGTAGCC TAATCTATCAGGAATGTACATTCTAGGTTTTGTCATAAGAACACCAAAATATAGCTTAGTTTTTCTGTCAGTGTACTTGG CATGAGAGTCTAGTGATTTCTTTTGATTGTTTAGGTTTGTGACACCCTTAGCGCATAAGGAATAGGTTGTGTTCTCTTTC TGTGTCTTGTTTTACAGAATTTATAGTTTTGGGTTTTAAAAGATAGTGTGGGAG
CDS sequence (LotjaGi4g1v0034600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCACTTCGGAAGGTCCGGTCCCCCTGACATCACCGACACCTACTCCCTCCTCGTTCTCAACATCACCTTCCGCAC AACTGCTGATGACTTGTTCCCTCTCTTCGATAAGTATGGGAAAGTTGTCGACATCTTCATCCCCAAAGATCGAAGGACTG GGGAGTCGAGGGGTTTCGCGTTTGTGCGTTACAAGTATGCTGATGAGGCTTCAAAGGCTGTTGATAGGCTTGATGGAAGA ATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCTAAGTATGGGCCTAATGCTGAGAGGATTCACAAAGGTAGAATTAT TGAATCAGAGGAAAGAGCTAAGCAGGGGTCAAGGAGCCGTAGCCCCAGGAGAAGGCATCGTGATGATCACAGATCCAGCA GAGACAGGGATTACAGGAGGAGAAGCCGCAGCAGAAGTTATGATAAGTATGAACGTGGTGATAGGCACCGTGGGAGAGAC AGGGATTATCGTCGCCGAAGCAGGAGCCGCAGTGCCAGTCTGGATTACAAAGGTCGTGGAAGGGGGCGTTATGATGATGA GCCTAGTAGAAGCCGGAGCAGATCAGTGGATAGCCGCTCCCCTGCACGCCGCAGTCCTAGTCCTCGAAGAAGTCCTTCCC CTAAGAGGAGTGTTTCCCCTAAAAGGAGCACTTCTCCCCGGAAAAGTCCACGGGGTGAAAGTCCTGATAATCGTAGCCGT GATGGACGGTCTCCTACACCTCGCAGTGTCTCACCACGTGGCCGCCCTGTTGCTTCGCGAAGCCCATCCCCTCGAAAGTC AAATGGTGATGAATAA
Protein sequence (LotjaGi4g1v0034600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGR MVDGREITVQFAKYGPNAERIHKGRIIESEERAKQGSRSRSPRRRHRDDHRSSRDRDYRRRSRSRSYDKYERGDRHRGRD RDYRRRSRSRSASLDYKGRGRGRYDDEPSRSRSRSVDSRSPARRSPSPRRSPSPKRSVSPKRSTSPRKSPRGESPDNRSR DGRSPTPRSVSPRGRPVASRSPSPRKSNGDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 263 | 263 | 7.9E-96 | – | |
| PANTHER | 1 | 263 | 263 | 7.9E-96 | – | |
| Gene3D | 5 | 103 | 99 | 6.7E-26 | ||
| SUPERFAMILY | 9 | 101 | 93 | 3.63E-27 | ||
| ProSiteProfiles | 16 | 94 | 79 | 19.007 | ||
| SMART | 17 | 90 | 74 | 1.6E-23 | ||
| Pfam | 18 | 88 | 71 | 8.9E-20 | ||
| MobiDBLite | 102 | 117 | 16 | - | – | |
| MobiDBLite | 102 | 271 | 170 | - | – | |
| MobiDBLite | 128 | 199 | 72 | - | – | |
| MobiDBLite | 200 | 225 | 26 | - | – | |
| MobiDBLite | 226 | 243 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0034600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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