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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0034600 |
| Transcript ID | LotjaGi4g1v0034600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G64200.1 serine/arginine-rich splicing factor-like protein, putative; Swiss-Prot: sp|Q9FMG4|SC35_ARATH Serine/arginine-rich splicing factor SC35; TrEMBL-Plants: tr|O82021|O82021_MEDSA Putative arginine/serine-rich splicing factor; Found in the gene: LotjaGi4g1v0034600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4205843..4207933) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTCACTTCGGAAGGTCCGGTCCCCCTGACATCACCGACACCTACTCCCTCCTCGTTCTCAACATCACCTTCCGTAA GCTCTCTCTTCCTCTTTCTCTCCGATTTTCAATTCAATTTCTCCTATTGCGATTCCTTAACCCTAACCCTAACCCTAACC CTAATTTCGGTTCTTATTTTGTAGGCACAACTGCTGATGACTTGTTCCCTCTCTTCGATAAGTATGGGAAAGTTGTCGAC ATCTTCATCCCCAAAGATCGAAGGTACTGTATTTTCTCGATTTCCTTGCTTTTTTCGTTAATGGGTCGATTTGATTATTC AATATTATTCAATATTTGATTGAAAGTTTCGATTTTTATTTTTTGAAGGACTGGGGAGTCGAGGGGTTTCGCGTTTGTGC GTTACAAGTATGCTGATGAGGCTTCAAAGGCTGTTGATAGGCTTGATGGTATGCTTCTTCATCTCATCATGTCTTAGATT TTGAATAAGGATTTATTTTTGATTATTAATTTTGGTAAAATTCTTCAATTTTCAGGAAGAATGGTTGATGGTCGTGAAAT AACTGTTCAGTTTGCTAAGTATGGGCCTAATGCTGAGAGGATGTAAGTTGTTTCTTGTCTTGTGCCATTTGTATGTTTGA TTCTGATATTATATATTGGCTCCTTTTCAATTTTTAACATTTACTTTGATTTCTCTGTTTATTTTTGTTTGATAAGATAT AATTGCATAGCCTTCTAGGATAGAATTTTTCGATACCAAAGGATTCTTCTTTTTGTTCATTTTTCTCGTGGTGTTGTAAC CTTTTTATTCTCATGCACTCGTCCCTCTGTTGCTGACTTTAGTTTCTTGCATTTGCAGTCACAAAGGTAGAATTATTGAA TCAGAGGAAAGAGCTAAGCAGGGGTCAAGGAGCCGTAGCCCCAGGAGAAGGTATGCATGTGCTGTTTTAGTAGCCCCAGG AGAATTTTGGAAGTTGAAAGCACCAATTTCGAATAGTAGAACTTGGGCAGTGATGTATCAGTTACACGCAATTTGTTCAT TTCTGTCGCTATGTTTCAGATGGACACAAATTTTATAGCTGAAACTATCTTTGATCTTTGGAAAATTCATTTCTTCATTG AATGTGTTCATTTTTGTTCCATCAAGCTGTTTAGTATTGTCTATTCTGCACTATATGTTAATGTTATTTTCATTTAAGCA TCATAACTTGTTGAACCCGACGAATTTGTAGAGTACTAATTTAGGTAGCCTCTGTGTGGCACCATGTTTATAGTTGACGT CACCTGATTCCTCTGTTGTTACTTTTGACGAAAGAATTATTCTTTTATGCTAATTTTGGACTTGCTTTGGTTAATGTCTT ATTCCTCAACCATCAGTATGATTGAAATAGACTGTTGATACAGATCAGTATGATTGGCACCATTCTTATGTATTCATTAA TGCCTGAATATTTGCAGGCATCGTGATGATCACAGATCCAGCAGAGACAGGGATTACAGGAGGAGAAGCCGCAGCAGAAG TTATGATAAGTATGAACGTGGTGATAGGCACCGTGGGAGAGACAGGGATTATCGTCGCCGAAGCAGGAGCCGCAGTGCCA GTCTGGATTACAAAGGTCGTGGAAGGGGGCGTTATGATGATGAGCCTAGTAGAAGCCGGAGCAGATCAGTGGATAGGTTC TCATTCATTGATACCCAGCTCTTTCAACTGTGATTGTTTACTTACAAGATCATCATAATTATTATTTAACTTGTCATTCA TTCCTACACAGCCGCTCCCCTGCACGCCGCAGTCCTAGTCCTCGAAGAAGTCCTTCCCCTAAGAGGAGTGTTTCCCCTAA AAGGAGCACTTCTCCCCGGAAAAGTCCACGGGGTGAAAGTCCTGATAATCGTAGCCGTGATGGACGGTCTCCTACACCTC GCAGTGTCTCACCACGTGGCCGCCCTGTTGCTTCGCGAAGCCCATCCCCTCGAAAGTCAAATGGTGATGTAAGTAATGTT TGTCTCGCTAAAAAGTTGCCAGATTTGTAGTAAGAATTCCACTCTCTTCTACCTTTTGTAACTTGTCAATTCTCTTCTCT TGCAGGAATAA
CDS sequence (LotjaGi4g1v0034600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCACTTCGGAAGGTCCGGTCCCCCTGACATCACCGACACCTACTCCCTCCTCGTTCTCAACATCACCTTCCGCAC AACTGCTGATGACTTGTTCCCTCTCTTCGATAAGTATGGGAAAGTTGTCGACATCTTCATCCCCAAAGATCGAAGGACTG GGGAGTCGAGGGGTTTCGCGTTTGTGCGTTACAAGTATGCTGATGAGGCTTCAAAGGCTGTTGATAGGCTTGATGGAAGA ATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCTAAGTATGGGCCTAATGCTGAGAGGATTTTCTTGCATTTGCAGTC ACAAAGGTAG
Protein sequence (LotjaGi4g1v0034600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGR MVDGREITVQFAKYGPNAERIFLHLQSQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 96 | 96 | 1.6E-59 | – | |
| PANTHER | 1 | 96 | 96 | 1.6E-59 | – | |
| Gene3D | 5 | 100 | 96 | 6.6E-27 | ||
| SUPERFAMILY | 9 | 96 | 88 | 2.96E-28 | ||
| ProSiteProfiles | 16 | 94 | 79 | 19.007 | ||
| SMART | 17 | 90 | 74 | 1.6E-23 | ||
| Pfam | 18 | 88 | 71 | 1.1E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0034600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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