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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0036100 |
| Transcript ID | LotjaGi4g1v0036100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein family protein; TAIR: AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9FJN9|PABN2_ARATH Polyadenylate-binding protein 2; TrEMBL-Plants: tr|I3SB42|I3SB42_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0036100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4346769..4352142) extracted from Lotus japonicus Gifu genome v1.2.
TGGAAAGTTCATGAAGCACTGAATTGTTTTTTTTTTACTGAAAAACAGAAGTAAAGCACTTGATAGTTGATACATCATCA TCGAAGGAAGAGAGAAAGGATTAGGTGACGGCGTCTCCTTCAGCGGCGGAGACATGGAAAACGACGACGTCGATATGGTC GGAGCTGAAAACAACAACAACAACGAAGCTGTATGTATACATGCAATGCTTTCCATTTGTTTCCTCTTTTGATTTTGATT TTTCATTTGGTTTTGCGTTCATCTCATGTTGTTGATGACTCTATTCGCGTTTTCTGAAAACCCTAATTTGTTCGCGCTTC AATGTCGAATTTGATCACTGCAGGAATTGGATGACATGAAGAAACGCTTGAAGGAAATGGAAGATGAAGCTGCAGCTTTG CGGGAGATGCAGGCCAAGGTTGAGAAGGAGATGGGATCTGTGCCAGGTGGGTACTTTTTGTGCCTTTTGTTGGGGTGTGG GAGGGGCTTGATTCGTTTGCTTTTTGCTCCCCTTTGTGATCAAATTTGTGATAGAATTATGGGTTTTCTTTTGTGGAAAT TGAATTTTGTTCTTCATGCGAAATCATCTATGTCTTTTGGCAGATTATGGGGCCAGATTTGGCTTGTTGGCAGGTAATGC ATTGTGCATTGTGCATTGTGCCCTTTGGTTAGTTTTTGGACTTAAGACTGAAAACTTCACTTAGATGCTTGAACTTTGTT ATGAGTGATGCATTTCGCCGCACTCAGTAAATGTTCGTGTCCTGAGCTGATGCGAGCTGAAATTTTTTAACTGTTATATT CAACTTTGGTGGAGTTATTATTGGCTAGTGCTTGAATTATTGGATTAGGGTAAATGTAAAGGGATGTTTGGGTGCCCCAG TACTCAGGACCGCTATCATTTCCCCTTTATAGATGCATATCATGATGCCTTGTATCATATGGATTGGAGAGGCATGTGAT GAGATGCTTGAGCATCTTTTAGCAAGTCCCTTTCATTGAAATATTTTTGACCTTTTTTTAAGAAAATATAAACTGATGTG TTTTATTTGTTTTGTTCATATCTGTTTTTTTTTTCCTTATAATTATTCCTCTGCTTGCACTTGCACATGGCGTGATCACT ATACTTCATTACCATCTATTCCTGGACTCTGACTCTTTTATTGATTCTTATGTCCTAATAGATCCTGCCAATGCTTCTGC AAGTCAGACCAATAGAGAGGAAGTGGATTCTCGATCAGTCTTTGTTGGCAATGTAAGCTGTCTCTTCCCCTGTTTACATT AAAACTTACTATGCTGCTTAGTTAGTTGTCTTATTGTCATGTTATAATACGGCCTGAGTATATTAATGGGATTATTTTAT ATCTTATGTTTGAAGTGATTGGTTGAATTATGAGCAATGTGTATGTGTTTACCTGCTTTTAGATACGAATTGGAGTATTT GCTATGCCTGGAATATATGCCTCTATGTTTTATTTTCATTAATTTCGGGGAAGGTTTGAGCTTAATCTTCATACTCTTAA TCTTGAAGCTCTGTAGCATGGCATCATTGTACGTAATTCAGGGACCATGATTGTGACGTGTATTTTGTGCATACGAATTA TGCACATGTTTACATCTGTGTGTGTGCGTGTGTGGAAACATCGGAAGAATATGATAGGACTCTCAAATCAATAACTGACC ATATACTGCAAGATTGTAAAGTATGTAGTTGTAACACTTTGAGTGAGGAGCATGTGCAATGTTTCCTGCTGCTGCTCACT GCTTCAGTGAGGTTTTCCTTTTTGTTCGAAAATTTGTTTTTATAAGGTGACTGTTCTTGTTGTTTATAGCAGCATCAGTT ATGAGTATAACTATAATTTTTTTTTTGGGGGGCTTCGGGCTTCTTGACCTGGAGAATTGAAACATTGCATTATATAATAT GAGATATGATCTATATGAGATTGTGAGGAGATTTACATATAGGTAAAGATACTTATATATATATATTTGATAAGCAAAGA TACATCCATATAATATGCTTGTGGCCTAGTTTCCCCACGAGCCTTGAATTTCACACTGATTTGTGTAGACCAGGCTTTTG TTTTGCTTGTGTTATCGATTATCTTCTGTGGTCTTTCACACACGCACACAGACATATATATATATGACTCCAATCAGTCA TCGGAACATCCTAGCAAAAAATCTCCATCTTTATTGCTGGTGTATTTTCATCACTGTCTCACTATTAATTGAATGATAAG TGCATTGGTTTTCACCATACTGTATCCTGCAAAGTTTGAATTTTGTTAAGATTTTTAATTTAACTTTTGGAGTAGTGACT GAAGAACATTCTCTGTTTGATGTTGAATCTGCTTCTGATATTTAGAAGTTTGATTATGTTTACAGTGATGACGTCCTGCT TTGATATAATGTTTGACTACAATCGCAGGTTATGCTTCCATCTACAAGTTTTCTGGTCTAGTAATGCTGAAGATGGAAGT ATTTGCTATAAATATACTATACATTCCTGGAGGAAAAAAATATATATTTGAAATTAACAAAAAGAGTGGTAAAAAAAAGA TACAGCATACAAAAAACTAAAAGAAAAACATTGAGGATAGACAAGAAAATAAGGAAGTTGAGTGTTTGGTGAGGAAAGTG ATCTTGGTTTGGGGTGAAAAAGAGTGGTCTTTAGCATAGGAGATTTTAATTAGTATGCTTTTGAAGTTTTTGAGGTGGGA TGGTCAGAGGAACAGATTAGATTACAGATCAAGAACCTGGATTCCTACTGGTGAGAAGAGGACATGCTAATAGGTAAAGG ATTGTGCATGCGTATCTGCTGTTTTGATTGCAAAGCTAAAGGACGCTTGTGGTTGTGCCTAGTGCTGAAGAAATATATAG GTATTATTTTCTCATGGTGAGGGGTCCTTGACATTCATTTTTTCCCCTCGGATCAAAAGGAAACTTTTTACCCTTTTAAT TCTACTTATTTTCTGTATACTTTATTGCAAAAACTAAAGGAGAAAAGGAAGAAGCTATGAGAAAACGTCTATATGCATGA CATTGTTCAAGAAACATTCATTTTGTGGTTCCATGATAACTTTGTTTCCTTGTATATCTCCTAATTGAATTAAATTTGAA AGAATCCAATTCCTGATTTGCATAGAATCTTGGGAAGAGAATATGAAGAGTGTGCATGTTTATAATGCAGTTTCTGAATG AAGGCTGGAGGTGGAGGGGATGCCAGACATCAAAATACAAATTACAAATCATATACATAAGCAATTAGTATATTTGCTTG ATTATTTTCTGTAATTGCTGACTAGACTAAATGAGGATTAACTTACGAAAATTGATACTTGGGGGAAGGATCCTCTAAAT TCTAAAGTGCAAGATGCATTTCAGGAAGTAAGTGTTTGCTGACTAGACTACATGATGGATAACTGTTTGCTAAGAATAGT GATATATATATTATGAAGTACAAGCATCTAAGGAAGAGTTGATGAAATTTTATTCCCTTATATTTACTTATTTTTGTTTA TTTATGGGAGTTTTGTATCCTAAGTGTAGCTTACATTTAGCAGATTCAAATACTGATGCTTGCAATTGCACTAGTCAGGC AAAAAATGAAATTTTGATCCAGGCTACGGCATGCCAATGTTTCAGATGAAATTTGTTTTTCCCCAGTCTGAAGTTACAGG GGTGAAACTATTTGGTTGGTGTAGTCTAAAGTACACTATGCGCCATTTCGCTATTCAAGCTTGAAATAAACTGTCTTGCC CCAGATTGTTTTCTTTTGTGTTGATTATTATTTGTAACAAAATATTGTCTTATCCAATTTTGGCTTTAGCAGTTTTGAGA TTGTAAGAAAGGTGAAGTCCTACCACAAAAATTCTTCAGTTTTACCCTGGTTTATTTATTGACTAGTGGCTGTGTCACAA AAAAAATCTTATAGATGGCGTTATGATGTCTACAGTTCTGTTTATAAGACTGGCTGAACATTTACTTTTATTAAATGTTG CACGATTATTAGTTACAAATGATAAGGGTGTCTGGTGTGAGTAAATCAGAAAGTGTTTCCTTTTTTTAACCTGGTGTTCA ATATTACATGAAAATATCTTACTACCATATGATTGATGTTTTTCCTATACTTGTGGCTTGGCCATCATTTAATCTATTGG GTTTGATATTTTCCGCAGGTGGATTATTCATGCACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACTGTAAA CCGAGTCACCATTCGCACTGATAAGTTTGGCCAGCCTAAGGGTTATGCCTATGTAGAATTTCTTGAAGTAGAGGCTGTCC AAGAGGCTCTCGCGCTGAATGAGTCTGAACTACATGGGCGTCAATTGAAGGTTACTCAAAGAGGCTGTTGCTATTTAAAA ATATCTTCCATTTCTTCTGTAATCAACTATACTTTTTGGACTTATTGCAGGTAAGTGGTAAGAGGACCAACGTACCAGGG ATGAAGCAATTTCGTCCCCGCGCCCCTAACCCTTACATGGGTTTTCGAGGCAGAGCCCTATTTGCACCACCTCCTTTTGC CTTTGCTCCTTATGGATATGGGTATGTTTTACTCAACTCTTTCCTTTTACAATATGTGTTATCTTTTAGCCACAACAATA CATTACTAGCATTCTTTTGTTGAATGCAGAAAGGTTCCAAGATTCAGAATGGGGATGCGCTACAGCCCCTACTATTGAGT TTCCGTTTCTGCATAAACAGATATATTGATTATTGGATGGATGGATATGATTCTCTACTCCTTCATGTTGGATGATGACC GATGTTTTGGCCATTTTGTGTGGGGAAATTATTGTCCGACACCTTGATTGAGGTGGTTGGTTCTGTGAGGATTAAACACT GACTTAACGGCAAACCTTGTAAACTTATGGTGTTTTTTCTTCCTTTTCATTGGTATTCGATATATGCTCAAATGTCCTTT TGTAAAAATGTCCATCGTAAGTGTTCAATGGATATGGTTCTCATTTGTTTATTTTTCCCAAATTCGTAAGGTTCATCTCT CTGCAATATAAGTGTTCTCAGGTCTTTCTTATGGGAGTCCTAGTCATCTCCATGTTCCCGATTTAGCTTAAAGTCTGATA GCACATTGAATCTTAATTGAACACATACACTTTTTAGAAACAGTACCCCAGAGCCAAGGCTCCTTAAGAGAATATTTTCT CTGCTTTAACACTTGTAACACTTATAAAGGGAATTGTTATTTAAACCACCTCACATCTATTCTAACCGTCTCTAATCTTG TGGAACTCGACTGCGGAAAAAGAAATGGACAAGGCATGTTCTTCCATTTCATTTCCTGATGGAACTCTCTCTCCCTGCTT CAAATTGGTGTTTG
CDS sequence (LotjaGi4g1v0036100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACGACGACGTCGATATGGTCGGAGCTGAAAACAACAACAACAACGAAGCTGAATTGGATGACATGAAGAAACG CTTGAAGGAAATGGAAGATGAAGCTGCAGCTTTGCGGGAGATGCAGGCCAAGGTTGAGAAGGAGATGGGATCTGTGCCAG ATCCTGCCAATGCTTCTGCAAGTCAGACCAATAGAGAGGAAGTGGATTCTCGATCAGTCTTTGTTGGCAATGTGGATTAT TCATGCACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACTGTAAACCGAGTCACCATTCGCACTGATAAGTT TGGCCAGCCTAAGGGTTATGCCTATGTAGAATTTCTTGAAGTAGAGGCTGTCCAAGAGGCTCTCGCGCTGAATGAGTCTG AACTACATGGGCGTCAATTGAAGGTAAGTGGTAAGAGGACCAACGTACCAGGGATGAAGCAATTTCGTCCCCGCGCCCCT AACCCTTACATGGGTTTTCGAGGCAGAGCCCTATTTGCACCACCTCCTTTTGCCTTTGCTCCTTATGGATATGGAAAGGT TCCAAGATTCAGAATGGGGATGCGCTACAGCCCCTACTATTGA
Protein sequence (LotjaGi4g1v0036100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENDDVDMVGAENNNNNEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTNREEVDSRSVFVGNVDY SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAP NPYMGFRGRALFAPPPFAFAPYGYGKVPRFRMGMRYSPYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 196 | 196 | 7.2E-114 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 196 | 196 | 7.2E-114 | – | |
| Coils | 14 | 48 | 35 | - | – | |
| MobiDBLite | 46 | 70 | 25 | - | – | |
| MobiDBLite | 55 | 70 | 16 | - | – | |
| SUPERFAMILY | 59 | 169 | 111 | 2.55E-27 | ||
| Gene3D | 65 | 151 | 87 | 5.3E-28 | ||
| ProSiteProfiles | 71 | 147 | 77 | 16.944 | ||
| CDD | 72 | 143 | 72 | 8.89466E-49 | – | |
| SMART | 72 | 143 | 72 | 5.3E-23 | ||
| Pfam | 73 | 141 | 69 | 1.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0036100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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