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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0049200 |
| Transcript ID | LotjaGi4g1v0049200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G61340.1 F-box family protein; Swiss-Prot: sp|Q8GX77|FB316_ARATH F-box protein At1g61340; TrEMBL-Plants: tr|I3SI68|I3SI68_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0049200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5964603..5966054) extracted from Lotus japonicus Gifu genome v1.2.
GTTCCCAAAAAATCAACAATTTCATTTCATTCATTCCACTTTCACAAATAGAAACCACGGAAACTTAGGTTAGTTTCAAT TTTCTTTCAACTTTCTTTGATTCGGTGACCAAATTGGCAATTGCTGTGTGGTTTGCAGAGAAGAGGGTAAACTGTGTTTG ATTTTGGGGAAATGGCGTTAGGGTTTGAGGGTTATAGTTTTGCGAGAACACTATCAATGGGGAGGAAGAGGGTTGTGGTT ACCAATAATGTGGAAAATGATTCAGTGATGACTCCGTTGAAGCGAGTTTGCAGTGGGAGAATCAATTTCAACTCGGAAAG GTCTCGCCTTGAAGCTCTTCCTCTTGATGTTCTGGTGAGTTTGCTGATTGATTTCAATTCAAGCTTGAAATCATGAAATT TAGCCCCAAATTGAGTTTTTCTGATTGTTAATTTGTTTTTATGAAATTGATGATTTTTCTTTGACCCTTTTGGATGAATT GCAGATTAGGGTGTTGTGTGGTGTGGACCATGAAGATCTGGAGCAGCTTTTACATGTTTCAAAAACAATTAGAGAAGCGG TGAGTTACTTACAGAGTAGTATCACTGATTCATTGTTGAGTTTTTGATTCATTTGTGTGTTTTTCAATTGATTGATTGTT CTGATTTTGTGAAATGTTTGGTTTTGTTATTGCAGACTGAGATTGCAAGGGATTTCCATTTTGAGTATAGCACACCAAAG AAGAAAACTTTTGGTTTTCGTTCACCATTTGACATTGAGGATGCTAATGAGTTTGAGGAAATTGAAGCTCCAAAAGCACC TTTGAGGAAATCAGTAAAATCAAGGCTGAGTGGTAAGAATCTGGGTGGAATCTCAGTTGCCTTGTTTGGTTCCACTGAGT AAGCCATGGAAAACAGCAACTTATGATGATGGTATTGGTACTATAAAGTTAGAGTTCCTCTTTTAGAATTGGTTATATGT GTAAATAGACACTGCACATGTTGTTTGTACAATGAATTGATAGATTAGAGAGGGACTTGATGAGTATTGAGATCTCACTG GTTAGTCTCACACACGTATAGAAACCATTACAAGGGACATCTTCAAATTCTTCATTGAAGATTGCTCCCTGGCTTGTTTG TAATCTTTCTGTACATCTATAGTCAAATAGAAAGTGGGAGAGGTTCTAGTTCTAGTGATTTTGTTTGGAGGGAAATCTTA GGCCCTTATGTTCTGGTAAATTTGGATACTGTATACTCTTTCTGATTCCCTGATGAAATGAATAGTGTTCTGTTGTATGA ATAAATTTGTTCCTTTATGTTTTTTTTTTACTTTCTTTCCCTTGATATCAAATCTTTTGTAATAGGTTGATTTTGCTTTG AAGTAGAGGTCCTTAAAATATTCGCAAAAATGTTCATAATCATGGGGCTATACTTTTTTCTGTTTTGAAAGAAAAGAAGA GAAAATGCTCAT
CDS sequence (LotjaGi4g1v0049200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTAGGGTTTGAGGGTTATAGTTTTGCGAGAACACTATCAATGGGGAGGAAGAGGGTTGTGGTTACCAATAATGT GGAAAATGATTCAGTGATGACTCCGTTGAAGCGAGTTTGCAGTGGGAGAATCAATTTCAACTCGGAAAGGTCTCGCCTTG AAGCTCTTCCTCTTGATGTTCTGATTAGGGTGTTGTGTGGTGTGGACCATGAAGATCTGGAGCAGCTTTTACATGTTTCA AAAACAATTAGAGAAGCGACTGAGATTGCAAGGGATTTCCATTTTGAGTATAGCACACCAAAGAAGAAAACTTTTGGTTT TCGTTCACCATTTGACATTGAGGATGCTAATGAGTTTGAGGAAATTGAAGCTCCAAAAGCACCTTTGAGGAAATCAGTAA AATCAAGGCTGAGTGGTAAGAATCTGGGTGGAATCTCAGTTGCCTTGTTTGGTTCCACTGAGTAA
Protein sequence (LotjaGi4g1v0049200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALGFEGYSFARTLSMGRKRVVVTNNVENDSVMTPLKRVCSGRINFNSERSRLEALPLDVLIRVLCGVDHEDLEQLLHVS KTIREATEIARDFHFEYSTPKKKTFGFRSPFDIEDANEFEEIEAPKAPLRKSVKSRLSGKNLGGISVALFGSTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 153 | 143 | 8.9E-57 | – | |
| PANTHER | 11 | 153 | 143 | 8.9E-57 | – | |
| SUPERFAMILY | 41 | 87 | 47 | 1.01E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0049200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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