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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0060500 |
| Transcript ID | LotjaGi4g1v0060500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleic acid-binding, OB-fold-like protein; TAIR: AT2G33845.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440; TrEMBL-Plants: tr|I3SNA5|I3SNA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0060500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7281567..7284637) extracted from Lotus japonicus Gifu genome v1.2.
AGGAAAGTGAATATGAGTAAATACAATTCAATGACTTAATTGCTCTTTACTTCCCATCTCTGAAAAAAAGAAACCAAAAA GTTTCTATAAGAAAGCCAAAAGCCTCACACAAAGACAAAGAGAGAAAGAGTTTGTTTGATCGGAATCAATGGCTTCAACG ACTAAGCAAGAAGGCACTGGTGGCGGTGGCGGTAGCACCGGCGGCGACAAACCGGCGAAGAGAAAGCCCGTTTTCACCAA GGTGGATCAGCTGAAACCTGGAACCAACGGTCACACCCTGGTGGCTAAGGTGTTGTCTTCTGACACCGTTTTGCAGAAGG GACGACCCTCTTCTTCTCAGAACCTTCGCCCCACTCTCATCGCTGAGTCTCTCATCGGCGATGAAACCGGCGCCATCATT TTCACCGCTCGCAACGAACAAGGTCTGAATATCTCAACCCCCAACAACCCTTTTGTTTTTTTTTTTTGGAATTTTTTGTT TATTTTTTATTACATTGTTTGTTTAGTTTTTGAGATTTTCTTCAATGGATCTGCATTGTTTTTTGTGTTGTGAGATTTTG GGTTGTGTAATGCTTGTTTGTGAATGTAGATCAGAATGGTGATTTGATCACAAATGTCAGGGTTACATGAAATCTGAATC ATGATCGATTGATATAATTCACATAGAATCAATATCCTTCATGTTTTGATGTGCTGGTTTTTCTGCCTAAGAATTTTTTT TCATGATGGGTGTTTGAGCTAAATGCTTTGAAGTAGATTTGATAGAGTGGGTTCTTTAGATATTATTCTGTTGTTTGTTG CTACAAATTTGCTTGGGGTGGAGTTTTTATACCCCTCAAGGTGTTCTTTCAGGGGCATGAGTTGTGAAATATATGATTCT GTTTAGTGTATTTCTGGATGAAAAGTATTGCTTTAAAGTGTCTCTTTATGAATTTGGGCTTCTTATTTCATATTTGAGGT TCAAAAACTGGAATGCTTTGTTCCGTAAAGTATTTCTTGCTTGTTTTAGTAACTATCTGCGCAGGGCACGGTTGTCGGGT TGCGGTCGGTATCTTTGTGGTCACAGTTGTGCTTGTTACCAGGATCTAATTTCTCACTGAGCTTGATTCGATTACTTATA ACTTGTTTTGTTCGTATCTTTGCATATCACTAGCTTTTTATTCACAGATTTTTTTTTTTGTTTTTTTGAAACTCATGGAT GTTGATATATTTGTTGTCAGGTATGCACGCTGTGGATGAAGTGTTTCATTTACATTTGGTGTTTTTCCCAAAGCTGTTTT AATGAAGATCTTTGAATGTTAATAAACTAGTTAAGGCTGTTTATTTTTAGATAAGAGTTTTATTGATTCCAGAGTCTGCA ATTTATCCTGTTGTTGGAGCTAGAAAGCAACTACTGGAGAATGGAGGTGACAACTTTCAGGTTTCTTTAAAAACCAAGAG AGTAAGCAAAATGGGATCGAAGTAATGAAAATGTGATGCATTATATGGACAGGACAATTTTGTGAAATTACTTAGTTTTG TTCTTTTTACTCGCTCGCATTCTATCCTTCTTTAGTAGACAAAACCTTATGATTCTTCTGTGTTTATGATATTTGAAGAT CTTACTTCATCTTTACAAACATTTTTAGGTTACAAAATGTGGTACTCCAATCATATATGAAGTTTATGATTTCATTTAAA TAAAGTTACGTCTAGAATCTTTTTGTTGATTGGTAATGCATGTATAGATTTATGATAGAAAAATACTGAACGTCATGAGA CGTAAGGCATGATACAGAATAAAATATCTTACTCCCTGGTTATCCAGCAGAAGATTAATGATGTTTTGTCACGTGCTGAT TTCTTTCGTTTTATTAATAATTTATTCGTCGCGTATATCATATCTGTTTATGATATATGTATATAGGGCGTGTAGAGAGA AGACACAAATTTATATTCTATCACCTAAGATCTGACCATTTTTCTTCTGTTATGTGCAGTTGAGTTGATGAAGCCTGGGA ACACAGTGATTCTTCGTAATGCAAAGATTGACATGTTTAAGGGATCGATGAGGTTGGCTGTTGACAAATGGGGCCGCATT GAGGTTACTGAACCTGCAAAATTCGAAGTTAAAGAGGATAACAACCTGTCTCTGGTCGAATATGAATTGGTTAACGTGGT TGAGGAATGATTCCTCAGACTAGTGCAAATGTGGCTGTTATGATTTCTTTTCAGTACAATGGACACTATGAAGGTAAAAC TTAACTGTTGATGATGGATGGGTTGGTATACATTCTTACTTCTGTTAGCTGGTATTTTCCCGTAGCATGTTTGACATCTT TAGGGTTAAGTTGATGTCACTTGAACAATGCTGTGTCAAAAATCAAGGTTTCTATTATCTATGTTAGTAACTGTATCCAA TGAAGTTAAGAAAAGTACAATGTGTTAATATAACTATCTTTATGTTTCTCTCAACTTTCATGTGCATGAACTTGTATTAT ATACACCTTCTCCTTCATATTTGAGAAACTGAGAAGAAGTGTGAGTATTGCTATGGCTTTGTCGATGCAAGCCACTAGAT GAACCTGCAAGAGTTATCTTTATACACAATCCTCATGGCTTGTGAAATGTGAAAATGTAATCTTTTCTAAGGTGTCTTGC GTTGTTTATGGAGTCTAGGAGTTCTGACTTTTACAGGATTTCCAGGTGCGCTTGTCGTTTTATTTTTCCAACAACTGTCA AGCGACACTTACGTCATGTAAATAGAAGACAAACAACATACAAGCGCCAATTGTTCTTGAATGAACAATAGTGTGCAAAC TAGATCAGATCAGACCCTAATGGAGGTAGAAAACCCTTAAGACCTAACAGCTCTAGTATATAAATGAACATGAAGATTAC AAGAGGTTCCTCTCATTTTTATAGGGGATGAAGTGTAAACCTAGATACATGGATTTGAGCCTTGGTGCTAAAAGGCCCAT ACAAACATAACCCGACCATTGAGGGGTTGGGTTGCCAAAGCCTATAAAGCATGTAGATCGTCAACTTAGTGTAAGTGATA CATGAACCGCCAACTGGCGCAAGGAATACAT
CDS sequence (LotjaGi4g1v0060500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAACGACTAAGCAAGAAGGCACTGGTGGCGGTGGCGGTAGCACCGGCGGCGACAAACCGGCGAAGAGAAAGCC CGTTTTCACCAAGGTGGATCAGCTGAAACCTGGAACCAACGGTCACACCCTGGTGGCTAAGGTGTTGTCTTCTGACACCG TTTTGCAGAAGGGACGACCCTCTTCTTCTCAGAACCTTCGCCCCACTCTCATCGCTGAGTCTCTCATCGGCGATGAAACC GGCGCCATCATTTTCACCGCTCGCAACGAACAAGTTGAGTTGATGAAGCCTGGGAACACAGTGATTCTTCGTAATGCAAA GATTGACATGTTTAAGGGATCGATGAGGTTGGCTGTTGACAAATGGGGCCGCATTGAGGTTACTGAACCTGCAAAATTCG AAGTTAAAGAGGATAACAACCTGTCTCTGGTCGAATATGAATTGGTTAACGTGGTTGAGGAATGA
Protein sequence (LotjaGi4g1v0060500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTTKQEGTGGGGGSTGGDKPAKRKPVFTKVDQLKPGTNGHTLVAKVLSSDTVLQKGRPSSSQNLRPTLIAESLIGDET GAIIFTARNEQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPAKFEVKEDNNLSLVEYELVNVVEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 1 | 154 | 154 | 2.6E-81 | – | |
| PANTHER | 1 | 154 | 154 | 2.6E-81 | – | |
| SUPERFAMILY | 24 | 151 | 128 | 3.14E-37 | ||
| Gene3D | 39 | 143 | 105 | 1.2E-36 | – | |
| CDD | 43 | 127 | 85 | 1.56264E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0060500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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