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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0062300 |
| Transcript ID | LotjaGi4g1v0062300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein cofactor assembly of complex c subunit b ccb2, chloroplastic; TAIR: AT5G52110.1 chaperone (DUF2930); Swiss-Prot: sp|Q9FJ81|CCB2_ARATH Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic; TrEMBL-Plants: tr|A0A151T4K1|A0A151T4K1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0062300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7631323..7636522) extracted from Lotus japonicus Gifu genome v1.2.
CAAACTCTCTGAGACAGTACAAGATATTTGACAAACGTTAGCCAGAAAAGAAAACGATGAATTGCTTGAGCTCAATCTGT TTCAAACCTTGTGTTCCTTCCAAGGTGCTTTATCCCAGAACCAGCTCCACAAAATTCACAACCATGGTTCGTGCCAGTCT TCAAGATCCTCAACCACCCAACACTAGCCAGCAACAACAGCTCAACCTCTCCGTTCTTCGCTTCACACTGGGTCTCTCTC TCTCTCTCTACGCACACACATGGTCTAAGGGTGCATTTGTGACATTGTTTTCTCATTGATATTTGGGGTGTTTTTGCTTC AGGGATACCTGGGTTTGATGAATCCTACTTGCCCAGATGGATTGGTTATGGCTTTGGTTCGCTTTTGCTCTTAAATCACT TTCTTGGTTCTGACTCAGCCACTGTTACACCAGCACAGCTTGTAAGAGACGTTTTCTTCAAAAGATATTGAATGTGATTT TCCTTTTTTTTATTCAGTTAAATTTATTTATCTTTCTGGGTGTGGGATTTAATTGTTATGTTTTTCTTTGTCATGTAGAG TACAGAGGTTTTGGGTATGTCATTGGCTTCATTCTCTATTGTGCTGCCTTACCTTGGCAAATTCCTCAAGGTATCTTTTA TCTATGTTTAGTAATTGCTTCCATCCAGCCTGAATGAATTTAATACATTTAATAAGACTTGTAAAGATACATAGGGAGCT CCATAAATTTAACAAGGCTTCCGGTTTCGGTAAAACATGCTTACATTAGAGGAGAACATTTGTTTTAATTGATCTTCTTT TGTTTGAAAATATATGGAGCTCAAATATGAAGTTTTTCATGTATTATATTGGTTCTCAGCCAAGTCTGGGAAATTGTTAG GGTGCCCAACCAGTGGATCGGACGACTCTACCAGATGGAACGCAGCAAATATTTGTCATGTCAACAGATATAGTGGATGG ATTGAAGGAGGACCTGGCTTGGGCGTCGTACATTTTGCTGCGCAATTCGAATGCCATTGCTGCGGTATGTGGCATAGATT TATCATTATTAGTTATAGGTCACCTGTAAGTACCACATTAGGCTCTCATTGAGGCTCGTGGAATGCTCTATCCTTGGATT GGAGCAACCTCCTCGTGCCCTGAACTTTTACTGTAAAAAACTAAGAAAAAACATATGGTAGGTTGATCCAAAAAAAAAAA GAGAAAATGATATGGATACTTGTGATTATAAATTATATATAGTATTTGGCTATTTGCTGTGTTTTGGTGAATTATATTTG TCTATGTTTGAAACTGCTAGCTCAGAAAATAAAATTGTCAAGTAATCGAAGTGTAAAATGCATGTGAGTTCTGGTGGAGT ATATGCATTGCTTAGCCTGCTGAGCTGGTAGAGGCTGTTATGATTGGTCAGAATAGTTAGTAGTTACCAATATATTTCGA TGGTTACATTGTAGTGAAAGGTTACTGCTCATGGAGAATTTAAATATTGAACTCTGTTCGATTCAGTATTACAATTCTTT CCCTCAATCCCGTGCACTTTTTTGTTGCTCTTATGCTGTTCTTCGTTTAACTTAATCTTGAAATGATTTCCATATCTTCA GCTAATTTTTATTCAAGGAGATATATGTGCAAGGGGCTACTGGAACACAACAGACGATTCATCAACAGAAATTCTACTTG GTTTTTTCAAGAAAAAAGTTGAAAATGCTCGCCTCTATGATTTGAAAGACACCCTATATTTTCCTCAAGATGCAGGTAAT AACAATTTTTTATACTATTGGTTAAGTATGCACATGGAAACTGAATTATGAAAGTAGCTGTCTTTTGGTTAGGTATGCTA CAAGCATGAAAAACATCCTTGTATTTTAGTTTAACTATATTAATTGTCTAGAATAGATGTCCCTCCTATACTTCAGACTA AAATATATGGTTGAGAAAGTTTTTAAACTTGAGACTGGGTCACTACGACTGGGTGCGGAACTAACATTTTGTTTTATGAA GTGTTTCTTTTCCTTTATAAAGTCGGAGCCCATCCAACCCTAGTTTGCTCACTAGAAAGGACATCTCATTTTCAAATACA CCGTGATGGTATGAAAAAAAGGCAATCTGCTGCTATAAAGTTTTAGGGTCCATATGCTAGGTATGGGACTTGACTCTCAC ATTTGAAGTATTGGATTCTAGTGTGGGGTTTATAAGACGTTGTCTCTCCAACTACAACGGCTAGCTTTTGTTGTATGGTT CTGCTAAGATGCTTGTCGTAAGCTCCAGCCATGGTTGATTTAAGGGAAGGGTCAAACCCATTGTGAGTCTATTTGTGTGC TATGGATGGGGGAAGTGTCAAACCCATTGTGGGTCTATTATAGGCAGCCTCACCTTACATTTACAAGATGCTGATTCCAT CGCTTGAACCTCCTAGTCATATTGCAATTTCATATATATGTTTATATATATATATATTTAATATTTCTGCAAAAGACCAC AAAGTGACCGAAACTGACCTAAAGTAACCGGTAAATTACAAGGAGCACCGGAGGGACCACCCTAGTATTCGCCACAAAAG TGATATAGGCTTATTCTTCTATTTCAGGTGTTCCCGTTCGTGAGTAATTACCGCTGAAATCAAATGTTGCGGTCATTTGA GATAGAGATGTGTATGCAGCATATACCTGGCCATCCTTGCAACTCACAATACTGAGGGAATTTACAAAGATATTTGATAT TGTATATTTTAAACCTTCGCCTCGCCATCCTTTTGAGAAATCATCTTTGAGAGTCACAACAATACTGAGGGAATTCACAT TTTCATAAACCTGCCCGAACCAAATAACAAAGCTGTAAGTTCAGCCACTGTCAAAGGCTGTGAATCAATTATAACCTTTA GATAGCAGATACCAGTGCTAGTTCTCTCTCTGATTAATTGGCCTTGGCTCACCTCATAAGTAACACCAACATTAATTGAA GCTAGATGGCGCAGAGTGACTAAAGAAATTGTCCCAGATCCTAACTAGATGCATAAAGCCCTTGGTCTCTATTGTGAAAA TGACAATAGCTTTGCTACAATGTCCTTTTTCAGTGCTCAAGGTAGATGAAAAGGACTATCCTCTCCCTTACTTCTCTTCA GCAGAAGAATATAGCAATAGACTTGGCCCTAAAAAAACTCCCCAGATTTGGAGACTAAACAAAAGCCCAAGCTTCCTGAA ATCTTCTCAAATCCGAATCAACGGCTTAGGGTTGCAAGTGCGAGCAAGAAGAAGACCGAGAGAAGTACGAGGGAGGAACC CTAGGATGCGAGCGAGAGCGGGAGAGAACCATGGCCGCAAACGTGATATCGAGAGCTGAAGCAAGAATCCATGGTTCGAG ATCAAGATCGATTGAGAGTTGAAGAGAGAAGCGTGGTTACGCGAGATCGAGATCGATTGTGAGCTGAAGATCTGCTATAT ATATTTCTAATGCCTCGAGTTAGGTGGAGGATATATTAGCTGACGGAACTGAGTCTAAAAGAAGATTTTTCAAGGATATT GCTCCTTCCCTAATAATGCTTCAATTAATATTAGGAATAAAGGCCTTATTTATTAAACTGATGATTAAATCTAATCCTTA CTGACATGACTTGCCCTTCACTTTGAATATTGTAAGGTTTTGTACTTTTGTTCAAATAAATTGAAAGTTTGATGAACTTT TTTCAGATTCTGACTTTCAGGATCTGGTACCTAAAGGAACTAGCTCTCTACTGGTGCAACCAGTGTTACAAGCTTCTATC GATAATGCTACTGGCTTGCAAAAACCTGTGGGATTTATTCTGCTGTCCTCAACCTTGAGGTATGCATTTAGTATTAAAGA CAGAGCCTGGATTGCAGCTGTGGCCAACAAACTAAGAGGTAAAGGCATTAGCTTGTTTACATAATTTTTTGATGAATTTA CACTTCATATATAAATTGTCAAGTAATTATTTCCATTGTAACCCTTTTTCTTCCTACTTGTAATGTGTCTGTCAGCAGCT TTATTGTTGGAATCGATACTAGTTTTTCATTCTGATGTTTCAAAGAATTAACCTATAGCATGAATATTGTGCAAGGCTTG TGAGATTTTTTGAGATGTATTTTTATATCATATTATTTAATTGATATGTAGATTGTAAGATTAAGGAAGTACAATTAAAA TTCTCTGCTATACAGGTTTGTTTACAATTCAATCTTGTGACAGAGTTTATTGATTAGGACAGGCTGCTATTTGTGGAAGA GTGCAATAGAGCTAACCAAATATACTTAATTGCAACTAAAAAACTTATGAGGAGAAAGTGGTTTGTTTGTAATTGTTGTG GGGTTGTTCTTTTCTCTTGATTTTTAATAAATTCTTTTGTTCTCTAAAAAAAATTGTATTTTGACACTTTTTTTACCATT TCACATATTTTGACATTTTTTTTCCTGTTTTGAGATTTTTGTTACCTTATATTTGATTTAATTTTACCACTTAATTTAGA AAACTGAACTATACATTATACACAATTCTGATGCTAATTTTTTTATGATACAGCATGTGTCTAGCCATCTACTCACCTAT GTCAATTCAAGAATATATGAAGTCCAAACAAAATGAAGCATGGCATCTACATGATAGAGGGCAACGGAAGGCATATTATT TTTTTGATAAGCGGCAACTGAAGGCATATGATTTTACATATCAAAATTAGGGTTTTATTGGTCATCTTAAGGGAAGCAAT TAGGAAATTGAATACTCTTGTGGAGTATGTTAGGACAAAACTGGTTTGCAAGCATTTGGATGAGGCTTAAAATTTCTTTC TAGCAAATTTTGGAAAAGTGGGTGAGTTGAATACTCATTTGAATCTATCACAAGATTTGATTTATTTTCTAAATGAGTCA TTTCCTATTATGTAATAAATCTATATTTGAATTAGATCTATAGCAGAAGATTTATTTCTTTATAGAAGGACATTGTGTGT TTAAATTGGTGCTTGTATGAATTGGTGAATCAAAGTGGAATTATTATTCACTCTTCCAAACTAATATGGTATCAGGAGCT TCCATTGCATTGATCGCCCATTAGAACCTAAACCTCTTACTCTTTGTATACAAACTATTGCCTCCTTTCCTAATTATAAA ACTCAGTTCAGACAATTATGGTAATTAAAAAAATATGCAATGAAGTTAATTAGTGTATTGATTTTAGAAAAGTTTATATA
CDS sequence (LotjaGi4g1v0062300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTGCTTGAGCTCAATCTGTTTCAAACCTTGTGTTCCTTCCAAGGTGCTTTATCCCAGAACCAGCTCCACAAAATT CACAACCATGGTTCGTGCCAGTCTTCAAGATCCTCAACCACCCAACACTAGCCAGCAACAACAGCTCAACCTCTCCGTTC TTCGCTTCACACTGGGGATACCTGGGTTTGATGAATCCTACTTGCCCAGATGGATTGGTTATGGCTTTGGTTCGCTTTTG CTCTTAAATCACTTTCTTGGTTCTGACTCAGCCACTGTTACACCAGCACAGCTTAGTACAGAGGTTTTGGGTATGTCATT GGCTTCATTCTCTATTGTGCTGCCTTACCTTGGCAAATTCCTCAAGGGTGCCCAACCAGTGGATCGGACGACTCTACCAG ATGGAACGCAGCAAATATTTGTCATGTCAACAGATATAGTGGATGGATTGAAGGAGGACCTGGCTTGGGCGTCGTACATT TTGCTGCGCAATTCGAATGCCATTGCTGCGCTAATTTTTATTCAAGGAGATATATGTGCAAGGGGCTACTGGAACACAAC AGACGATTCATCAACAGAAATTCTACTTGGTTTTTTCAAGAAAAAAGTTGAAAATGCTCGCCTCTATGATTTGAAAGACA CCCTATATTTTCCTCAAGATGCAGATTCTGACTTTCAGGATCTGGTACCTAAAGGAACTAGCTCTCTACTGGTGCAACCA GTGTTACAAGCTTCTATCGATAATGCTACTGGCTTGCAAAAACCTGTGGGATTTATTCTGCTGTCCTCAACCTTGAGGTA TGCATTTAGTATTAAAGACAGAGCCTGGATTGCAGCTGTGGCCAACAAACTAAGAGCATGTGTCTAG
Protein sequence (LotjaGi4g1v0062300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNCLSSICFKPCVPSKVLYPRTSSTKFTTMVRASLQDPQPPNTSQQQQLNLSVLRFTLGIPGFDESYLPRWIGYGFGSLL LLNHFLGSDSATVTPAQLSTEVLGMSLASFSIVLPYLGKFLKGAQPVDRTTLPDGTQQIFVMSTDIVDGLKEDLAWASYI LLRNSNAIAALIFIQGDICARGYWNTTDDSSTEILLGFFKKKVENARLYDLKDTLYFPQDADSDFQDLVPKGTSSLLVQP VLQASIDNATGLQKPVGFILLSSTLRYAFSIKDRAWIAAVANKLRACV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| PANTHER | 20 | 286 | 267 | 3.9E-115 | – | |
| Pfam | 68 | 284 | 217 | 8.6E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0062300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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