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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0066500 |
Transcript ID | LotjaGi4g1v0066500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein; TAIR: AT4G10660.1 CDC68-like protein; Swiss-Prot: sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470; TrEMBL-Plants: tr|A0A1J7FUR1|A0A1J7FUR1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0066500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8327256..8329593) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAATTCACATCACATGCAGAAGCAAAGCACCTGAAACCCAAAAAGGAAGAGAAGATAAACAGAGAAAGCTTCAAGAA ATCACCATTTTCTTCCGAAATCTTGCTTGGCGTAAAGGTAAATTCCCCAAACTCTCTTCACTCTCTGCACTTCATCTTCA TCCTTCGCAATTGCATGCTCTCCAACGCATTCACCAATTTGAATTTTATATGAACACTCTATGCAATCCATTATCCCATA TTCCCATTCTACTACTTCAATTTGAAAATTTTCTCAGTAACTACTGCTAGAAACTTGAAGCCCAAGTGTTCTTTCTTGGT TAGGAAAAATGTATGGTATTTTTTAGATGAAACTTGGAGACCAAGTATGAAATTGGCGGTGTATTTCAACGAAGGTTTGA TTTTTATTTTAATTTATCCTTTTATAATTTTGGGAAATGTAGGGATTTGAAGATCTTTGAAAAAATCTACAGTCTTGGAA AAATTTGTTCTGAAACTTGCGGACCAAGTATGAAATTAAAACTATAAATTGAGAGGAGGAGTGAAGAGTGAAGACGTTCA TTTGCATAATTCAGAAAATGAAGGAAAGAAAAGTAAGTGCAACATTTTTTTTCTTCTCTGTCACTGTTTTTTTAGGGTTT TTTACTTCAATCAGATTGATTAGGTTTTCACTACTTGATTCCCAAAAGAATTCTCTGCTTGATTTTTGTTGAGATGAATC AGGTTTTGTCTATTACTGTTTTTAAGGGTTTTTAGTTTGAACAAATTAATTAGGTTTCATCTACTTGATTTTTGTTGAGC TTTTCAATTCATCATTTAGTTTTCTTTTGACATAATCTGTTGATAATCTTGATTCTTGAAGACCATGGATTCTTGGCTAT GAGAAAACCCTATGATAACAGGGGATATATATGTTTTTATTTCACTTCTAAAATTGAGTAACTGTTCTTATGTGTTATAT CCATTAAAATTTCCAGTGCTTGATAATTTGTTACATTCTTGGTGGTTGTTGGTGTTATGCAATTTCAACTCTGATTTGTT TTTTTCCCAACATTCTGAAACAGATATCGGTAAGCATGGAACGGCAAAGCAAGAAGCTAAAAGTGGATTCTAGTGAGGAA AACAATGTGACAGAGTGTGGTGAAGGTTCATCAAGTTTATGTTGCAAGAATTGGCAATCATCATATTCTTCTTCATGTGA GCCTTGGTTTCTCTTGTATGGGGAAGGTTCTCAGTGTTCGCTGCTAATCAACGATGATCAACACAAGAAGTTCACAATGG AAATCCCAGAATTGGATGGAGCTACTTGCCTTGCATCCAAAGATGGGTGGCTTCTTCTATTTGACCAGGGCTCAGTGTTC TTCCTCAACCCATTTTCAAGAGCCAAAATTGATCTTCCAAAGATCCCCTTTTCAGAACTCTCTGATGATTCTGAGTACAT TGCAGCATTTTCATGCGCCCCTACATCGAAAGAAAACTGCACAGTTGCTGTAATCAAGCGGTGGGAATACATTGGGATTC AACTCTATTTGCATAATTGTCAAGGTGGTGGTGACAATTGGGCTGAGCATGAACATATTTGCACTCTTGCAGATTTGAGC ACAATTAGAGTTGCTGTGTACGAAGAAGGGGTTTTCCACATTTTTGATGGGTTCTACGGGTCGGTTACATTTGATGCCAG GACTGAAAAATGGAGAACCAGAATTGAATTTTCATCAATGAAAAAACTTGACAGTGGAGGGAGGAACTGTAAGATAAGCA GAAAGTGGTTTTGGACGAGTAATTTAAGGGAGAAACTGGGGCTTGAAGGTGATTTTTCTGTTTCCATATGCGGGACGCTG ATTCCACATTCAGATGATGAAGTTGACTTGCTGATTCAGAATGAGAACCTTGAGGGTTCTCAAGGGTCTAAGGGCCGTCA CTTTAAAGGGGTGTGGATCCAACCACCAAGACTCTTTCAATTACCTGCAGATGAAAGATTGGTAGCTTGATATCTTGTTG TTCCTTCTTCTGAGTTTGGGTTTATTAGTAGGTATATATAATCAGACTTGAGATTTTGTTCTATTCTTTTGGTCTTTGAT CAGAATTGCTCTGTGATAAGGATTTGGAAAAGAATACAAGATATAACTACCACAGATATTGCTATTGTAGCTTGATATCT GGCTGTTGTTTGTTTTGGGTTTAGTTTAGCAGAATTACTAGTGGGATATGTAGTCACTGAGACTTGACATTTTGTTCTAT TGTTTTGTTCATGTAGTCACTGAGACTTGAGATTTTGTTCTATTGTTTTGTTCAGAATTGCTCTATGATAAGGATTTTGG AAATGAAAAATAGATGAG
CDS sequence (LotjaGi4g1v0066500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACGGCAAAGCAAGAAGCTAAAAGTGGATTCTAGTGAGGAAAACAATGTGACAGAGTGTGGTGAAGGTTCATCAAG TTTATGTTGCAAGAATTGGCAATCATCATATTCTTCTTCATGTGAGCCTTGGTTTCTCTTGTATGGGGAAGGTTCTCAGT GTTCGCTGCTAATCAACGATGATCAACACAAGAAGTTCACAATGGAAATCCCAGAATTGGATGGAGCTACTTGCCTTGCA TCCAAAGATGGGTGGCTTCTTCTATTTGACCAGGGCTCAGTGTTCTTCCTCAACCCATTTTCAAGAGCCAAAATTGATCT TCCAAAGATCCCCTTTTCAGAACTCTCTGATGATTCTGAGTACATTGCAGCATTTTCATGCGCCCCTACATCGAAAGAAA ACTGCACAGTTGCTGTAATCAAGCGGTGGGAATACATTGGGATTCAACTCTATTTGCATAATTGTCAAGGTGGTGGTGAC AATTGGGCTGAGCATGAACATATTTGCACTCTTGCAGATTTGAGCACAATTAGAGTTGCTGTGTACGAAGAAGGGGTTTT CCACATTTTTGATGGGTTCTACGGGTCGGTTACATTTGATGCCAGGACTGAAAAATGGAGAACCAGAATTGAATTTTCAT CAATGAAAAAACTTGACAGTGGAGGGAGGAACTGTAAGATAAGCAGAAAGTGGTTTTGGACGAGTAATTTAAGGGAGAAA CTGGGGCTTGAAGGTGATTTTTCTGTTTCCATATGCGGGACGCTGATTCCACATTCAGATGATGAAGTTGACTTGCTGAT TCAGAATGAGAACCTTGAGGGTTCTCAAGGGTCTAAGGGCCGTCACTTTAAAGGGGTGTGGATCCAACCACCAAGACTCT TTCAATTACCTGCAGATGAAAGATTGGTAGCTTGA
Protein sequence (LotjaGi4g1v0066500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERQSKKLKVDSSEENNVTECGEGSSSLCCKNWQSSYSSSCEPWFLLYGEGSQCSLLINDDQHKKFTMEIPELDGATCLA SKDGWLLLFDQGSVFFLNPFSRAKIDLPKIPFSELSDDSEYIAAFSCAPTSKENCTVAVIKRWEYIGIQLYLHNCQGGGD NWAEHEHICTLADLSTIRVAVYEEGVFHIFDGFYGSVTFDARTEKWRTRIEFSSMKKLDSGGRNCKISRKWFWTSNLREK LGLEGDFSVSICGTLIPHSDDEVDLLIQNENLEGSQGSKGRHFKGVWIQPPRLFQLPADERLVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 30 | 298 | 269 | 1.6E-71 | – | |
PANTHER | 30 | 298 | 269 | 1.6E-71 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0066500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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