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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0069100 |
| Transcript ID | LotjaGi4g1v0069100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Something about silencing protein 10; TAIR: AT2G43650.1 Sas10/U3 ribonucleoprotein (Utp) family protein; Swiss-Prot: sp|Q12136|SAS10_YEAST Something about silencing protein 10; TrEMBL-Plants: tr|A0A0R0L704|A0A0R0L704_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0069100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8715895..8721066) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAATAACTTCCAATCCCGAGCCCTAAAGCTCGGGAGAAAGTGCAGGGAGAAAATGGGGTGTTAAAACATGGGACCAT TTTGGGTTTTTTTTGGAAAATAAGGGGGTAGCAATTCCCATAGCGGGCAAATTCTTATTCCCTATATCAAACTAATGACG CTTGCATGATCCTAGTTTTTTCACAAACAAGGTTTTCTACGCAAAAGTGCAAAACAAAACAGAGTTAACCTTCGTAACCG CAACAGAAATTGCCACCGTACTCCTCTGCTTCCAGCGTCGTTGTCTGCCGTTCGCTAGCCTTTCACTATTTGCCGCCTCC TCCTTCACAGGCTCCGCTCTCCACCGCCGTCGTGAACCGTTGTGGACGCGGGGTTACTTTACTTTGTTGGTGCGAGGTTT CATCGTGGGTGGATAGTTGAGTAGGTCAAGTTGTTTTACCATCACGAACAAGTTGTCCTGTTTGGGTCCTCTGTGCACTT CTTCAGAACTAAGCAGGTACTTCATTCTTTTTCTTCTATTGAATATGAATAAGCATTTTGGGTTCTCCTCTTATTTTTCT ATATATATTATCTATGCTACATTGCTACCCATCATTTGCATAGCATTTTTTAGGTGGGCTATTCTTAAATTTGTACCAGT GCTGATGCTGATGTTATAGGCTTATAGAAAAGTGCTCTTATGAAGTGGTGAGAATAATAGCCTCTGTGGAGCATAATTGA ATTTTGAAGTTTAGATGTTATAGCATATATATAATATACTTTACACTTCATGCAAACAAGGTAGTTCTGGAAATTAAATA GAATGGGCTAATGATATTATTTCCCAGTAGATAGTTAAACTCTCTAATGCAACAACAAATGGATAGTTATCTCTAAATAT TTACACTATTGATGCACAGAAATATCAGATTTGAGATGAAGTTAGTTGTCTTTAGATTTTGCAATTTTCTAATTCATGCC TCCCTAAACAGATAAAAACTTCTAGTTGGAGTTGGGGACATTCTTAAAGGAAGTAGCGCGTTAGAAACAGTAGTAAAATA GGATAATTTGAATGCTCAACTGACAATTGATTCTATCACTAAAAACTAAGAGCAACCACTTGTCTTTGCTGAATCACCAG AAGAAGCAATGGTAATCATTATTATTTAATCTTGGATTATTTAGTTATCTGTCTTCCAAATGATAATCTGTGAAAATGAT GTTTGCTTTGGTTTGATTGATTATCAACATAAAGTACCTATGGAATTTTTGGCTGTAAAATGTAATTAATTTGATGAAAT AAACCTTCATATGGCAGAAGGATCACATTGGTGTGCAGTGTTTGGAAATGTTAAAAGTTAGAACTGCTCCAAAGCCTAGC ACTGCGCTAAAGCGTTTGAGACCTGCCATTGGGTACAAGCTTTACTCCTATATCCTTTATATTACTGGTTTCCAACGTCT TGAAGCTTACTAGCAACTTCAATATTTTTCAGTCATCTTGAAACAAAAGTTTTTGATGATGATGCTCTGGGGCCAGCTAG ATTGTCTGAGGGTCTTCGTAAATCTAATCTGAAGAAACCCAAGGTATTGAAATAGAGATTTTTGTAAGATGGATTATGAT TTTTTATTCTTATGCAATTCATAGTAACCTGCATTTTTGTAAGCTACTTAAAAAATGTGACATATTAACTGGTCTGTTGG TTTGAGTGAAGGGGCTTGACTCTTGAGTCTCTTAAACACAAGTTCCTGAGTTTAATCCCAAAATTTATGTGTATGGAAAA AATATTGTTGGGGCCACGTTTGGTGTCTGACCATTTTCCAGGATATGATTTCTTATTGAGTAGGGGATACTCTAGGAAAT AAAGAAAGTCTTTAAACATATATCTCTTCCATTATATGTACATGGTGACTATTTTACTTGTTAGTTGTTATATTACGGAA TATCATATAAGATAAGGTTGAATGACCACTAATCTGTTACCCTCCTATTGCTAAATTTGGATTAGTTTGTCCATGCAAAA CATTGTTCAGCATCTGCAGTCCATGCTATTCATGATCTCAAAAGAAATCTTTCCACTGTTTAGGCTACAAAAAGTTTTAT TTTTCATATCATCTGTTTTTGAGACATCTCACCGATCCCATTTTTTCGGTAAGGTGGTTTCTGGCGATGATGATTTACCC GAGAGAGATGAAATTGGCGAAAGACGAAGGAAACATGAGCTTAGGGTGCTGGCTGGTGCTGGAATTAAGACGAGAGATTA TGATGATGGTCGCCATGGGTCTCTTGAGGTTGCTGCCAAAGAGAAGAATGATGAAAGAGGGGATTCAGATAATGAATTTT ACAAGCAAGTGGAACAACTGCGTGCTACTAAATTGGCTGCAAAAGCTGAGGTTTACTCAAGGTGAATTTCTGGTACCCTT TAGCCTTGGCTATTTTCTCTGATCTGATTCAGGGAATTTTACTTTTCAGTCTTTGTATCTGTTCGGCTGAAAACGAAAGA GCACTTATTGGAGCTTATTTAGTGCTTTTATAGTAGATAAGCTCTAATAAGCATGGATCTAAACGGGCTCCTTTTCAATA TGATAATAAAGATTGTTTATCTTTTGCAGGAAGTCAGCATTACCCACTTTGCCAGATTCTATAGAAGGAAAGCGCCATAT CTCTTCGCAGGTTCTTTACTTGATCCATCATAGTTTTCAATTTAGTTGCTCATATTTTCTTGCAATGTTGTGTGTTTTTA CTTGTTGCCAATATGCTATAGATGGAGAAGAACAGGGGACTAACTCGAAATCGCAATAAGGGGAAGAAGAATCCTAGAAA GAATTACAAGGTACTTCAAATAACACTTGTTCTTCATGGTTAACAAACACTTCAAATCTTTAACTGGCTTCTTGTTTGCT ATTTTTCTTTCTTTTGTTATCTTAATGTGCAGCGCAAACATGAAAAGGCTGTTAAGAATCGCAAGGGGCAGGTTCAGAGC ATTAGAAGGCCAACCGCACCTTATGGAGGGGAATCCACTGGAATTAACGCATCTATCAGTCGAAGCATCCGATTTAAGAG TTGATATTATCAACCGGATTTACAATATTGTCATCTGATATTATCATCTAGTTTGCCCCTTATACCATTGGAAATTATTG ATTGGAAGATGAACATATTTGACTTATGGCATGTTTGTAAATTTATCAGTTTTGATCCAGTTATTTCAGAGTAGTGTTTT ATAGTACTTTTTCAGCTTTTTAACTTGCACCATACGAACCTGCAGCAGTCAGAGTCAGATACATGGAGCCTTTGTAACTG ACTAGTCGATAGCCTCCCTAGCTTCATTGATCTTAACCTGTTGTTGTCGTTGAAGCTCTTCGACTTAAGCCTTCAATTCA GAAACCCTCTTTAACTTGGGTACCCTTGCTTGCTTAGCTAAAGCGTCCATAGACCACATCTTGGAACTTGACACTCAAGC ATCCTAATGTCTTAGATACTCAGACTTGGTGGCGACTATCACATAATAAAATGACAAGCTCATGTACTTTGGTCAAATAT TGACAATGTCCTATGCATATGAGAATAAGGATCCCTAAATATATGTGATACCTCCTATTACAAAATAATATTTGTTATAT CTTTAACATATCGCTATTATATCTCAGATAATTCCTTCTAGGTTTGTTACACCCTAAATATATAAGTACACACCAGGGGA TGCTACCCTGGTACACATTAACTTCTAACCCTAATTCTTAATTTCTTATTTCTTCCTCAACTTTACTGATTGAGCATCAT CAAAGTGGTTTGCAGGCCGCCTTCGTTGCCTACCTGATTGCTAGAGACAAGAAGAAGAATTCTTTCAATGAAGAAACGTT CCAACAAATCAACTCTTAAACATAGTCATATGTTCTTATCCAAGTACGGTAATCTAGTGCCATAACAAAAATCTTCCTCA AAGACTTCTCTAAGGCCAAACTCCATAATAACAAGTCACACCTTGGTCTATAATGTCAGGTTTGATCATTTAATTACATA AACATTCTTTATTTTGCTAACTCATTGTTCCTTTAAGACTTTAAGTTTTTCTCTCTTTAATTATACACAAACTTAAACAT TAGAGTATCTTTACAGCTGATACCTCACAACCCAACTAGGTCTTGCATTGCCTCACTGTGCCTGAAATTTATCCAAAATC GTGCACCACCACTAGAGAATCTTCTTACTCTGATTTAGGAAGAACGATGCACTTCAACGTCCAATCATTTTCATGCCATG GTAGTCCTTTTACTCAAGAATAGTTACACAATTTTTTTATTGAATTAAATTTAAAATTTGTTTTCTCACATGATAAACTA GGACCGTTATCAATGTAACAAAAGTGATACTCCTAAATTAAACAAAAAGTGATATGCCATGGAGTACTTTTTTTTTACAA ACAAAGTGCTACATTAAATCCTAAAATTGTTTATTTTTAGTTCAGTAATTTTTTAGAAAAATTAATAAATGACGTGCTGT AGAATTGTTGAATCAGCTCTCTGCCTCCCTTAATAATCTACTCATTTTTAATATACCTAATATTATATTCCGATGCAGAA AAAAATATATATATACCTAATATTATATATGCATAACAAATAAATAACTAAAACTAACCCAATAAATCTAGAATAATGAA CCATTACATTTTTCTTCCACTCATACAAGAGTCGAATAAGAAAAAATAGAAAGAAATTAATTGAATAAGAAAAAATAGAA AGAAATTAATTATATGATATATGATGTTATAGGAAATGTAGAAAAAGCTAAAAACAAAATGTCTATGGAAATAAGATGAA AGAGAAAGTAAAATGTGAATGAACCATTACTAACCTTTTGTTAATATTTTTTTATAGGCAAATGTTAGTTGTTAGTAAAT TAGTCTCTCCCCAAGATTCGAACCATGAACCTTTCACCTTTCATTTCACTCAACCCTTATGTCTCCTAACTCTTATCACT TGAGCTAACCATTAATGACCCTAACTTTTTGTTGTATGTATGACAAATGACAAATACAATAATATGGGTAAATGTAATAT TCATTTGGACCACTTTACACCTAAAAAGGGATTAATTTTCAATTATTAAATTTTTTTACAAGAATTTTCAATTACTAGTT GAGTATATTATTGCAAAAAAAGTTAGTCATTGTATATGAAACTCTAAAAATA
CDS sequence (LotjaGi4g1v0069100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAAAAGTTAGAACTGCTCCAAAGCCTAGCACTGCGCTAAAGCGTTTGAGACCTGCCATTGGTCATCTTGAAACAAA AGTTTTTGATGATGATGCTCTGGGGCCAGCTAGATTGTCTGAGGGTCTTCGTAAATCTAATCTGAAGAAACCCAAGGTGG TTTCTGGCGATGATGATTTACCCGAGAGAGATGAAATTGGCGAAAGACGAAGGAAACATGAGCTTAGGGTGCTGGCTGGT GCTGGAATTAAGACGAGAGATTATGATGATGGTCGCCATGGGTCTCTTGAGGTTGCTGCCAAAGAGAAGAATGATGAAAG AGGGGATTCAGATAATGAATTTTACAAGCAAGTGGAACAACTGCGTGCTACTAAATTGGCTGCAAAAGCTGAGGTTTACT CAAGGAAGTCAGCATTACCCACTTTGCCAGATTCTATAGAAGGAAAGCGCCATATCTCTTCGCAGATGGAGAAGAACAGG GGACTAACTCGAAATCGCAATAAGGGGAAGAAGAATCCTAGAAAGAATTACAAGCGCAAACATGAAAAGGCTGTTAAGAA TCGCAAGGGGCAGGTTCAGAGCATTAGAAGGCCAACCGCACCTTATGGAGGGGAATCCACTGGAATTAACGCATCTATCA GTCGAAGCATCCGATTTAAGAGTTGA
Protein sequence (LotjaGi4g1v0069100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKVRTAPKPSTALKRLRPAIGHLETKVFDDDALGPARLSEGLRKSNLKKPKVVSGDDDLPERDEIGERRRKHELRVLAG AGIKTRDYDDGRHGSLEVAAKEKNDERGDSDNEFYKQVEQLRATKLAAKAEVYSRKSALPTLPDSIEGKRHISSQMEKNR GLTRNRNKGKKNPRKNYKRKHEKAVKNRKGQVQSIRRPTAPYGGESTGINASISRSIRFKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 39 | 67 | 29 | - | – | |
| PANTHER | 43 | 220 | 178 | 7.5E-60 | – | |
| PANTHER | 43 | 220 | 178 | 7.5E-60 | – | |
| MobiDBLite | 86 | 112 | 27 | - | – | |
| MobiDBLite | 141 | 221 | 81 | - | – | |
| Pfam | 147 | 219 | 73 | 2.7E-24 | ||
| MobiDBLite | 164 | 186 | 23 | - | – | |
| MobiDBLite | 205 | 221 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0069100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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