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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0071800 |
| Transcript ID | LotjaGi4g1v0071800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT3G19130.1 RNA-binding protein 47B; Swiss-Prot: sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B; TrEMBL-Plants: tr|I1KLY0|I1KLY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0071800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9103007..9109189) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGTAAAGATTTAAGAGTGTTGCTACTTGCTAGTTGCTTCTTGCAGCTTGCTAGGGTTTGTAAGAGTAGATAGATGG CTGCAATGCAAGTTGGAGATAATAAGAGCCGTTGATTAAGAGGCAGTAGGCCCCACAGCAGGGAGACACGTTCACGGACG GCTACGTTATAATCGAGGTTTTACAATTTTAGCCTCAGATCCAAATCCAAGGGTCGTGTCTTTTCTTTTAAAACCAACCC TACCGATTTCGCGTCCTTCTCTTTTCTTCTTCTCTCTTCTCTCATTTCATTCTCTCTGTTCTGCCTCCATTAGAAGAACG AAGATAACAGAACAGAGAGAGTAAAAGAGAGTGAGAAGATTCAACTAACTAACTAGCTTCTTTACCATGGCTCAACCTAG CAACGGTTCCGCCGATCTGAACCAAAACGCGCCGCCGCAGCAGCAGCAACCGCAGCAGTGGGCGGCGCAGCAACAGCAAT GGATGGCCATGCAGTATCCTGCAACCGCCATGGCTATGATGCAGCAACAGATGATGATGTACCCGCAGCATTACATGCCT TATGTACATCATCATTACCAGCCTCACCACCAGCAGCAGCAAGCAGCGGCGGCTGCGGCGGGGGCGGTGCCTCAGCAGCA GCACCAACAACACCATCACCAGCAGCAGCAGAAGCAGCAGCAAGGCGGTGGTGGTGGTGATGAGATCAGGACGATCTGGC TCGGTGACCTTCATCATTGGATGGATGAGAACTACGTTCATAACTGCTTCGCTCACACCGGCGAGGTTTGCTTCTTTCTG AACTTCTTCTTATCTATTTGAAATTGGATATGCTAGATTTGGAATTTTTCTGATTTGCGTTTGGTTTTGCTGATTTAGTT GTTTGTTTGCACTGGATTGATAGATTGGTTGTTGAATTTCAACTTTGTGCTGAACTGTGAAAACGACAAATCGGTTACTT GAGCTGCTATCTAAACTTTTACTTTAAGGTCCTTGATCTTTTTGTCTATGATTGTTGGACTGTCTTAGTGGACTCTGGTT GTGATGAGTGATTATTTAAGGTGATTTCATTTCCCCTTTTCAATCCTTGGCATTGCTACATCAAGGGGTTTATACTTTTG ATGGCCTATGTGGTCCCCTAGAGTCTGAAGGCTGAAGATGTAGCCCTGTTTGACCAGAGGTTTCATTGGGAGTGATATAT CCAAGATCTCTTAATTTCACTCTTGTAGAAAAAGGGTCTATTGAAAAGGCATTCTTTGATTGGAAAATTTTAGGGGAAAC AAGAAAGGAGGATAATATTTTCATTTCATGTTGATATTTTCTAATTTATCAACTTTTTAGAATGAATGGAATGGAATGAT ACAAACATGAACTTAATATCCTACTTTCTTGTTTATTTTTTTAAGTATGTTATAACGCTTTTAATTCAAAATTGAATTTT TTTTAGTCCCCCATCAAAATATATCCTTGTTCCTCTATTGTAAAATATCTGCATGTTGAATAGCCATCCTTGACGATCAG GCGTTGTGATTTACAGAATTCATGAATGAATCTTTTTGCTTGTCAGCTTCCCTAAGCTTTCATTAAAGGAGCTTCGATTC AAAGTTAGTGCATAGCCCCAAGAAAAGCTTTCTGATGTGTTGTTGCCTTATATGCAGGTTGTGTCAGCGAAGGTCATTCG GAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTGGAGTTCTATTCGCGAGCAACAGCTGAGAAAGTCTTGCAGA ATTTTAACGGGACAATGATGCCAAATACAGATCAGGCATTCCGTCTTAATTGGGCTTCATTCAGCGCAGGTGAAAGGCGT TCTGAGGCTGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCCATGCTGCAAGAGAC TTTTGGTAGCAGATTTTCGTCTATAAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGCCGTTCAAAAGGCTATGGTT TTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACCGAAATGAACGGTGTTTTTTGTTCCAATAGACCCATG CGAGTAGGTGTTGCAACGCCCAAGAAAACTTATGGCTATCAACAACAACAATATTCTTCACAAGGTTTGTTATTTAGTTA TTGTGCTTGCTTTTGAAGCTTGTCTGAAGTAGATTTTTTAGATTATGCTATCTCAATGTTCAGTTTATTAATCAATTTTG TAGTGCTACTTACATCACCATATACCTTTTCTGCTGCAGATACCTCTAATTTTTCCTATTAACTGAGCAAAGGTCCCAAT AATTTAATTGTTTTAGAAGTTTATTATCATTTGTTATAATAATAACTATTATTAATCTCTGTTTTTTTTTTTTTTTTGGT TTGTGTACTCCTATCTTTAAGGTGGTTAAAATTGGAGTACTAACACATGATAAATAAGTTGTTAGTAATGTGCATTATCC TATGGGTAATAAATCATAAGTTTGCTTTATGCCGGGAGTAATCATAAACAGTTTTTCATACAAGTCTTGGGCTCTGCTCC AAAAGATTTTACTTCAGTATATATTAACTTCCATACATCGTTTCTGCTTGCATGGGCTTATTATTTTTTATTTTTGACAA TTGCCAATGGCTGATTTTTCTATGCTTTTGCATGTCTCTGTCTCTATTCCCTTGGATATCTCATGTTACATATTCTCCAA TGTCTGAATGACAACAAGTCTGTTTTTTCTTATACTTCAGTATATTATTGAATTTTAATGTGTGCTGTTGAAATCTTTAC GCAGTTTAGAAATTTGAATACATAACCTGACAGTGAAATTCATTGTTCATTATTTTCTATATGTTGCCAGGCTTTCTAGT TTACGTTTATAACACCATAAGGTTTTCCCTGGAATGAAGTTGCATACTAACATCATATATCATGCTTCTAATTAGAAATT TCTCTTGTTCTTTATTTCTGTAACTAGCTGTAGTGTTAGCTGGTGGACATCCGTCTAATGGTGCTGTGGCCCAAGGTTCT CAGTCCGACGGGGATTCTAACAACACAACAGTGAGTCTTCTTTTGTATCTTTATATACCCGTTAATCAACTTGCTTCATT TGATATCTCAGTGTCTGGTCTGTGTTACAGATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTGAGACA ACCGTTTTTGCAATTTGGTGATGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTCGTTCAATTTGCTGACA GGTACACTTGTAGTATCCCTTAACATGCATAAAGATTATAACTTGCTTGTTAGTGCAACCCCAACACTCCCACAGTGCAG TGGTTGGTTTCCTATGGAATGGAAAGCGGCATAAGTATTCCTGAGATGGGTGTGGAATCCTTGATTCTGCCAACTTTTAA TGCTTTTGAAATCAATTAAGGATTAGGAAGGATATCAAAGCATATTTCTAAAAGTGAGAACTATTGAATATGATGATATG ATTGTGATTGTTATTGCCAATATCGTAAGTACTATCTTATTTTTTCCTGGGTAAATTGGCTACTTTTTTTATGCCTTCTG CTGTTACTGTAACAGAAAGAATGCGGAGGAAGCAATTCACGCATTGAATGGAACAGTGATTGGGAAGCAGACAGTGCGTC TTTCTTGGGGCCGCAGTCCAGGAAATAAGCATGTGAGTTTGTTTCACTTTTTTGTGATTTATTTTCATTGTTTAATATTT TTACCTCTGGTCATCAAATGGGAACATTTAGTATGATCTCATTCTCTTCACGTCTATGTTTTTGTGCACTAAATCTCTGA AACTGTTTTGTTTTTCACGGTAAGGAGTATATAAGCATCATTTCAGCTCATCATTTCTTGTAGTTTGTTATATATCCTTC TATCATGACTTGCTCATCTCCTTGTTTGCCCTAATTAAAAAATTTCATTTTCATATACACTTTAATTCCTTAGCACAACT ATAGTTGTAGTTTGTCTTGTCATGATAGTAGTTTTGAAGGGTTATCCATTAGCATAAACACTTTCTAATTCCTTTTCATT TTAGATTTTCATTTTGAAGGCTTCCAAAATGAATTCTCACTTGTTTCGAGGCATGCTGAAATACTATCCCTAATCAATCA AATTTTTCAAAATAATATAGAAAGGGAAATGAAAAAGGTAACATATAGATGCGTTTTTTATTAGTCAAATCCATCTCTAA TTTAATTCATTTGCTTCGCACAGTGGAGGTCTGATTCCAACGGCGGCCATTACGGTGGTCAGGGTTATGGAGGCCATGGA TATGGAGCGAGACAGAATCAAGATATGGGTATGCATCCTACTGCTGCAATTCAAGGTGCTTCGTAACGGGCCGTTGCAGA ACTCGGTTAGGATGGATTTTATTGCTCTCTGAATCAAACTGTAGTATTATTTTTAAATTTGTAGTATTGTTATATGTGTT TGATTCCTAAGATTGTATTAAAATGTCTGAAATTTTGGAGTGAACCTGACCCATTAAACATGGGTCAGGTGTTTTTGGTT TTTAACCCTTAAAAGTTAAAACAATATTGGTCGTAGACAGCCAAGATTATTTTTAATACTATCTTTACACAGTGCAATGT AGCTGTTTGAGTCAGGTGTGTGTTTGATTTGTTAAAGAAATGAAATACTGAACACAAGTATTTGTTTCATTAGTTTTATT AATAGTGTTATAGAATGGGCCTTTTGCCCTCCAGTAACAAGAAAATAGTAGAATAAAGTCAAATATGAAACCTAGGATAA ATGTTCAAATATTTATTTTTTCATAAACTAATAAACTAAGTTAATTTACCTCATCCTCAACCATTGAAAGGTAAAATAAT GTTCATGAAGTTAAACTATGAATATATCATTGATAAATAAGTCAATCAAGTTGGTATGTCATGCAAATATCCTGCTTCCC CATCCTGATTATTGGAGCTGGTTGGTCTCGCCAATTTGCCTTTACTCCTATGCATACCAATGGTTGAATAATGTCAAAAG TTGACGCATTACAACACTTATCTTGGACCCTGATTTGGTGAGTTGATGTATTGGAAAAAGTGAGGCTCTTCCTTTGGCTT TCCGTGCATGACAGGCTCCCCACATATGTGCATAGGTTTAGCTCTATCACATGTGGTAGGTGGTTGTGTTTGTAGGAGGA TGTACTACATTGTGTGTGACTGCTCCCACTCTAAGTTTGGCTAGAGTTAGATCATCTTCCTGTCGACTTTTGTCCACGGG ATGCTCAGTCAGCTCATGTTTATGCCTTATTGTCCACGAAGCCCCACTTTCCTCACGATCATTTGGTGACTCTAGCATTG GTGTAATAATGCTGTTTTTTAGACTTGTGGCTCATTTTCAAGGTTTAGCAATGCAGGACTTGTGTCTCCTTGTTATGTTC CACGCACTAGGATGTCATAAGAGGTGGTGTCACACACCACCTTCTTGGGTTAAATTGAGCACTTATGAAAGTTGTATCCA CTCCTCTAGGCCATCTTTTCAAGGGGGTCTCATCCGTGATCCCTTAGGTGCTTGGTTCTTTGGATTTGTAGCCAAAGATG GCTACGAAGATCCGTTTCTAGGAGAGGTTTAACTGTGAAGTATGAGTTGCAATTTTGTTGGTAGCTGGGTTACTAGGAGA TACAATGTGAGTTAGATAACCTCCTATTAATTACCTTTTTGTGTGAAGAAAAATTTGGACCTCTCATGGTTAATGCACCA GAATCATTTGAAGTTTTATAGTTGCTTCAATTGTCTTGGGAGGTTTCCCTTCATCATGTTGCTAGAGGTTGCAATTTGGT TGCAAATAAGTTGGCAAAGATGGCTTCTTCTCAAGTGTGTAGGGTCCACTCTAGGAGCTCCCCTCCCCCTGTTTGTAAGG GGATTTTGGGCTAAGAGATCCATGAGTAGTCTCTGTTTTCACCCCTATTCAAGCAATCACGCCTGCATGACGGTTGTAAC TAGGTAGTGTCCTCGGGTAGGTAGTTCGGTATAGCAGTAATGCATTGACACATGAGAATTATAACCAACTCACATAAGAT TCTTAAGCAACATATATAAATTTGGGGAAATATGGTTCGATTACTTGGCAAACTCGAGACTTCTTTTATCTAATTCTCTA ATATTGTTTATTCACTATAGTTA
CDS sequence (LotjaGi4g1v0071800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAACCTAGCAACGGTTCCGCCGATCTGAACCAAAACGCGCCGCCGCAGCAGCAGCAACCGCAGCAGTGGGCGGC GCAGCAACAGCAATGGATGGCCATGCAGTATCCTGCAACCGCCATGGCTATGATGCAGCAACAGATGATGATGTACCCGC AGCATTACATGCCTTATGTACATCATCATTACCAGCCTCACCACCAGCAGCAGCAAGCAGCGGCGGCTGCGGCGGGGGCG GTGCCTCAGCAGCAGCACCAACAACACCATCACCAGCAGCAGCAGAAGCAGCAGCAAGGCGGTGGTGGTGGTGATGAGAT CAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTACGTTCATAACTGCTTCGCTCACACCGGCGAGG TTGTGTCAGCGAAGGTCATTCGGAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTGGAGTTCTATTCGCGAGCA ACAGCTGAGAAAGTCTTGCAGAATTTTAACGGGACAATGATGCCAAATACAGATCAGGCATTCCGTCTTAATTGGGCTTC ATTCAGCGCAGGTGAAAGGCGTTCTGAGGCTGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTA CTGATGCCATGCTGCAAGAGACTTTTGGTAGCAGATTTTCGTCTATAAAGGGAGCAAAAGTTGTCATTGATTCTAATACT GGCCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACCGAAATGAACGGTGT TTTTTGTTCCAATAGACCCATGCGAGTAGGTGTTGCAACGCCCAAGAAAACTTATGGCTATCAACAACAACAATATTCTT CACAAGCTGTAGTGTTAGCTGGTGGACATCCGTCTAATGGTGCTGTGGCCCAAGGTTCTCAGTCCGACGGGGATTCTAAC AACACAACAATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTGAGACAACCGTTTTTGCAATTTGGTGA TGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTCGTTCAATTTGCTGACAGAAAGAATGCGGAGGAAGCAA TTCACGCATTGAATGGAACAGTGATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGCCGCAGTCCAGGAAATAAGCATTGG AGGTCTGATTCCAACGGCGGCCATTACGGTGGTCAGGGTTATGGAGGCCATGGATATGGAGCGAGACAGAATCAAGATAT GGGTATGCATCCTACTGCTGCAATTCAAGGTGCTTCGTAA
Protein sequence (LotjaGi4g1v0071800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQPSNGSADLNQNAPPQQQQPQQWAAQQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHHYQPHHQQQQAAAAAAGA VPQQQHQQHHHQQQQKQQQGGGGGDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRA TAEKVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT GRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGYQQQQYSSQAVVLAGGHPSNGAVAQGSQSDGDSN NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHW RSDSNGGHYGGQGYGGHGYGARQNQDMGMHPTAAIQGAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 17 | 436 | 420 | 7.9E-199 | – | |
| PANTHER | 17 | 436 | 420 | 7.9E-199 | – | |
| MobiDBLite | 64 | 106 | 43 | - | – | |
| MobiDBLite | 65 | 102 | 38 | - | – | |
| Gene3D | 107 | 187 | 81 | 2.4E-24 | ||
| SUPERFAMILY | 107 | 283 | 177 | 9.56E-40 | ||
| ProSiteProfiles | 108 | 188 | 81 | 15.187 | ||
| CDD | 109 | 189 | 81 | 4.63104E-46 | – | |
| SMART | 109 | 184 | 76 | 3.5E-15 | ||
| Pfam | 110 | 177 | 68 | 4.9E-13 | ||
| Gene3D | 188 | 292 | 105 | 2.3E-21 | ||
| CDD | 201 | 280 | 80 | 3.16829E-46 | – | |
| ProSiteProfiles | 202 | 281 | 80 | 17.216 | ||
| SMART | 203 | 277 | 75 | 9.7E-20 | ||
| Pfam | 204 | 274 | 71 | 1.9E-15 | ||
| Gene3D | 310 | 425 | 116 | 3.0E-25 | ||
| SUPERFAMILY | 313 | 422 | 110 | 5.37E-30 | ||
| CDD | 321 | 392 | 72 | 1.43283E-36 | – | |
| ProSiteProfiles | 322 | 394 | 73 | 18.086 | ||
| SMART | 323 | 390 | 68 | 7.5E-21 | ||
| Pfam | 324 | 388 | 65 | 2.6E-17 | ||
| MobiDBLite | 416 | 439 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0071800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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