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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0074600 |
| Transcript ID | LotjaGi4g1v0074600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cold regulated protein 27; TAIR: AT5G42900.1 cold regulated protein 27; TrEMBL-Plants: tr|G7JL76|G7JL76_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0074600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9536096..9542178) extracted from Lotus japonicus Gifu genome v1.2.
GCCATGTGGAGCTTTTTTCGCATCCAGAAAGAAAAATACACAACCGCAACCAACCCAAAGGGTTTGAATTGATTTCACCA CCTCCTCCTCCGCCGCTGAAATTTCCGATCACTCTCTCGCACCACCGCCATGGAAGAAGATCTCCGTCTCCACCGTGACC TTCAGTCGCCTCCGGTTCTGTCCGATCCTGAGTTGACTCGCTCCGGTTCCGCCTCCAGCTCCTCCGCCATCACCGCTGAC AAGGAGTTCTCGCGTAATTGCACGGACTCTTCGTTTCCGGTAATAGAATCTCCCTCACTCTCACCTTCTTCTATTTTCGG AATTCCTTACTACATGTCAGATTTTCCTATTTCGCCTTCGTTTCTATTTTGTTTCCTTCAAATTGCTGAGTTCAGATGTT GATTCCGGAGTGTTTTCGTGTCTGGATCGTTCCGTGCCTGAATTTGGCGACTCTGAGCGATTTTGAGTTTTTCTTAATGC TTTGCATGCGTTCAAGCTTCCATGGATTGGGTTTGTGTTTTGTAGATCATGTAACGAGCTAGTTTAAGTAATTTGTTAGC TAAATTAAGCTATAAATTAGTCGAGAATATCTGAAATCTAGAACCGGGGGCAAGAAAAATTAGAGAATAACATAAATGTA ATTATGATTTACTCTGTTAAATATGCAATTGGTTTGGCCTAATTAAGGTTTGGTCATGGTTGCTGATGACTTGTAATCAC CTTTGTTTGTTAAATATGCAAGTTCTTTTGTGCTCTTATCTTCATGGCGGAACGCACTCAAGGAGCTTTAGAAGCAACAA AATAACAAACAGTTTTTGAAAAGTATACTTGAAGTAGCTAGATTAAGAGAGGAGAGTTTCCACTTGATTTTCTAATAGTT CTGAATTGATCTAGTCTTGGTTATTGGCATTATTATTACATTGATTAATTGTATAGACTGACTAATTTAGTTCCTATAAT AACTTAAAATCTCCTATTGCTTGACATAGCTTACTTTTCAGAAGGTTATATATATAGACTTAACACTCTGTTGCCTGCCA ATAAATATAATAAGTTAAAAAATGAAAGTTTTAAATTGTATTCCAAGTCGCGACCTTGTCTTAGAGTGCTTGTGAAGATG AAAACTTTTCTGTTCGTTTAGCTGGCAAGGATATACTTACTGCAAATTTTTTTACCAGGACGAGTCGGCTAGATGGACAG ATCAGCAGCACAGTCTATATCTCAGTTCTTTAGAGGCCTCATTCGTGAATGAATTGCATCGTTCTATAAATTTACGTGGT TGGAGCTTTCAAAATAACACAGATGGAGCATATAAACATAGAACTCTGCAAAAGTCAGTTAATATGCCTAAGCAGGTCAG TGATAATTTTCAGTTAGCATCTCCTTTGTATGTGTGTGTGCGCGCGCATCATTTTGTACTTTTACCTATATAATCTAACC TTATTTATTTTCTGCTTTCAGTCTCTGGCTCTCCAAGATGGCTGCCAGAAGAAGACCAAACTTGAAAGAATTGCACCTAT GTTAGAAAGTACAGCTGATTCTCATGTTCATGCAGGAAGTCAATTGGGACTTATACCTATAGATAGAGCTTGCAGTTTGA AAGAGCATCATACCTATGACCATGACTTGCCTTGTGACGAGGAGATTCATGCTAAAGGGAGTTTACCATTCACCAACAAG TCACCAAGAAGTAGTGCGAAGAAGCAATGTCTTTTCCCCTCATTCCATGCAGAATCAAGTTGCAGTTCTGCAGGTAGCTT GAACTACTTTTTCTCTCGCATATTGATTGTTCTGTTGGCTAGATAATGATACTTTCTATGACCCTGTCTTTTCTTGCACG TTATGCAAATGCTGATGTTTATCGTGCGAACTCTCAAAATACATGCATATATAGTCTCATTAGTAATTGCATTATCAAGT TTTGGTGTTCAGAGATTTAAGTTATCAGAACATCGGTTTACTCAGTTCAGTCAATTGTTGGGAAGTCTACATGATCATTC AACTGAAACATGGCACAGAGGAGATTGTATATTAATTAGTTCTGAATTTACCTGCTGTAAAGGCGTATTGATGCTGGTCT CATTTGCACTGTTGGTTGTGGACCTGTGGTTAAAAATTACTTGTTATATTATGAAGCTTTTTTGCGATACATTTTTTACC GGTCATTTAACCAGTTGGTTATTTTTATACCTTGCAACAGTGCTATACACTAAAGGACACTGCATATTAATTGATTCCGA ACTCACCTTCTGTAAAGGCTCATTAATGTTTGTCTCATTTGCATTGTTGGTTGTGGAACTGTGGTTAAAGATAGCTAGTT AAATTATGAAGTTAATGTTTTGCAAATACATTTTGTAAGTGGTCATCTAACCATTTGGTTAGTTTTATACCTTGCAACAG TGATATATAGGGAGAAGACTTAAAGTGAGTTTGTTTATATAGTGAGAAAGTAAGGATGTATCCACCCTTAGGTTTTCATG GGTTAAATTATGATATACAAGTTTAAATTAAATCAACTATGGATGTAGACTTATTTGCTCACTTTAGACGAGGCATGTCC GCTATGTCTTTTTGCCGTTGATGATGATGTGGGATGTCCAAGTAGCTATGTATCTTCTTGCGTTACATATCCTTGTATGG CTGATGAAGGAAATTTGTTTAGATGGAATTAACTAAGAATAAACCAACCTTGCCATCTTTCCTGTGTTGATACTTGATAG ATATAACTTCAAATCTCTCTGTGCATCTCTGTCATGTTCTTGCCACTGTATAATTTTGCTGTTTTATTTTGTTTGCATAA CCATGTGGCATTTAAGATTTTTCTTAAGTTGTTTATTTGTTATACTGAAACCGAACTACTATGAAACCTGAGTCCCTGCT CTCCAGTTCTAATTAAGATATTGCTAACAATGTCATAACATGTTTTACAAACCACTGGTTTCACATAATTTCCTTACAGT GCTTGGATCCAGTAAAGTGAACATTGAATCGGCACTGACAGAAATCGATTGTTACTGTACAATTTTACATGTATTTTTCC TTTCAGTGAGATGTAAAAGAATAACTTAACTAATTTTTTACACCATGGACAGAGCAAAGAGCGTTTATTAATGCAATAAT CGTAATTTCTAAGAAACAATATATATTCAAAATATCAAGATTTACAATGTGTATCAACTATCAAATATGAGTTGGGTTGG TCCTTAAAGTCAGTACTTTTTAACAGAAAAGAAACATTTCTTTGGTTCTTCCCTCTGCTTTTAAACCATTGTTGTGAGAC AGCTCGACACTGGCAATAAAATGCTATGACTTGTTTGAATGACATGATTGAGATCGTTTTTACTGGACTACTGGAGTCAG ATTAAAATATTTGTATTCTTCTGTTATTTATTTGTTTGGCATTATATAAATTATTTTACTTTTTATACTTTTTGGTAGAG GTCACCGATCAAAATTTCAAGGATGAAGTAGCCAGTTCAAGCACCATGCCCATGGCTAAAAGGTTGAAGACAGCTGCAGC AGATGGTTCAAGTAGAGATCAAGTAGGGTGGAATTTATGCTATATAATCTAACAATCTGAATTAACTTCTAATGGCTTGC TGAGCTTTTCATTTCTTTTGATGTTCAGGTTGTGCCGTTTGAAAAGTTTCACACATCAGATGTTTCAAATGCAACCTCGG AAAAGAAAGAACATGAATTGCAATCGGAGCTCCGAGCGAGCATTCACATCCCGAAGTCTGATCTGCGTTACTTTCTAAAG GGTAGGTAAGTATATGCAACATAGAATTAAGGCCTCAGGTTTTATGGTGGATGCTGGTATAACATGGCGCAGTTTCAAGA AAATTGTTGAGGGACTTGCGTGAAGGAAAATCGTACATGGAATTTAGTGCTGGTTAGGTTATCTAAAGTTGTTTAGTGTA AAATAGTGAGGAAGAATCTTTTGATAGCAATATCCACAGTCATAGTAAAAAATATGATTGCATTTGATTTTTTGTGGGAT GAATTTTTGGTTGATTGACCGAATGTTTAGGTAGGTAAGTGTTACATTTCCTTACTAGGCTTCCTCAAGTTTTCTTACTC CAATTGTGCTTCAAAGAGTGAGTAAAATGCCATTTTTTGTTATTTTAGTTCCTGATAGAAGAAAACTCATCAAAAAAGTT TCTGAATGTATAATTTGTTTGTCACTTTGGTCCCTACATGCAAAAGCTTTCATTCGTTTTGAATTTTAATATTAACTCTT AGAGACTGATGTAAATTTTGATGTTAGCTTTAAAGAACTAATATGAATTTAAATTGACACTTTAGGGACTGATATGAAGT ATGAACTAAGTAGTATATATATGTTTTTCAAGAACCAAATTAGACTATAAATTACAGTTTAGGTAATTTTTTATGAATTT CCTTTGAATAACTGAAATGACAGACCTAATCTAATTGACGTTTACTCTTTAATAGTTGAAAAGATAGAGAAATCCAAATA TGTGAACCTCCATTAAATTGCATTTTTCAGTTGGAGTTGATGCAGTGCTGCTGTATTTCATTGTACATACTCCAAATTGT TTCTGCTGCAGTTCAATTATTTTGAACTTTCTCTCTTATCCATAAAATTTTATTATGTAGGTTCCAGCATCTGTATTTGT TCGTTGAACTATGGTTCACTGCCTTTTTCTCCCCTTTGTGTGCCCCATTGTTTTTTGATTCGGTGGTTCAATAAACTGTC TTTCAAGACTTAGTGCATGTTTGTAAATCCTTTTACAATTGACTCTAAAACCAGAATCAATTATGCGGAGAAGCTTTACT GAGCAGTTTCTGGATTACAAAATTGATTCTGAGGAAAGAGAAACTAATCCAAACATGTTATTATTGACCTAGCTTTTTGA CCATGGAATGTAGTTTTTTTATTAGGTTTTGTTTCTGAGGTAGCAATCATTTGGCAGTAGTTAGTATTGGCCTACTTTCT TCGTGAATGCCGCCTATGTATATCTTTTATGTGAATCTAGCTTCTGTTGTAATATGTTACATACCTCTTTTTAGATCCCC TCTATATGGAGGAGTGATTCGTTTGTACAAAGAGCAATGCTATGTATTATGAATTGTGGATGCAAGAAATGCAAGCATAG CATGTGTCAAAACATAGCTTTATTTGCCTATTACAAGTTTACAACATAAATAGGCAATCATCTACATTTAATTTATATAT TTGTTATGGAGTTGTCTAAATCACTTGACGTAAATATTGGGTAAAATTATTTTACTCTCAGTTGGTCCTATAATATTTTA ACACGTGTATATGTTCTCTCTCCTCCACAATTCTCTTATTCCAATCTGCTCGCATCCTCACCCCTCACTCTGCTCCCTTC TGATCTCCCCGTTCGATGAACTCAATGATGATGATGTGTGTCTATGATGTTTACCATGTTTTTCTTATGATTTTGTGCAT ATTGCATTACTTTTACATAGCTCATTAATTCCATTGTAAATGCGCAATCGACAAATTACAGGTGGAAAAAGTGAAAAAAA GAAAAAAAAAAGGAAAATGAAAAAAAAAATATATGCATAAAGCCCTAATCACATTCTATTTAAAGGGGAGCCGTGTAGCA CAAAGAGCATAGTGGTTCTTAATTAAATTTGAAAAGCACGCCTACATTGGAGCACGATTGTGCATGTTGGTGCGACTAGA TTAAGCATAAAGCCCTAATCACATTCTATTTAAAGGAGAGCAAGGTCAGTAAAAAGGAGAGGTGAGATAGAGACTGAGAG GCAGACCGAAACACGAACTCGGATTTAAGATTCACAGTTGGGGATCATTGGAGTGCTTCGACAGAGTCTTCATGAGATTA GTTTTCTTCTCTATACTTTATATGATGTTAACTGCATGGCCTATGATTATTATGTTTTCAACTTGTATCATAAATAGCAC ACACTCTCTCTCGAGGTTGCAATGTGAGAGACTTTTGAGTTTCTATGTATGTTAGTGTTCCACAATTTATGAAATTTATC CACAAAATCATGTTTATTTATTAATGGTTTTTTAATTAGTGTAACGAAGAGATAATTGGTATGTTATGGATTGCCCAAGA GGC
CDS sequence (LotjaGi4g1v0074600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGATCTCCGTCTCCACCGTGACCTTCAGTCGCCTCCGGTTCTGTCCGATCCTGAGTTGACTCGCTCCGGTTC CGCCTCCAGCTCCTCCGCCATCACCGCTGACAAGGAGTTCTCGCGTAATTGCACGGACTCTTCGTTTCCGGACGAGTCGG CTAGATGGACAGATCAGCAGCACAGTCTATATCTCAGTTCTTTAGAGGCCTCATTCGTGAATGAATTGCATCGTTCTATA AATTTACGTGGTTGGAGCTTTCAAAATAACACAGATGGAGCATATAAACATAGAACTCTGCAAAAGTCAGTTAATATGCC TAAGCAGTCTCTGGCTCTCCAAGATGGCTGCCAGAAGAAGACCAAACTTGAAAGAATTGCACCTATGTTAGAAAGTACAG CTGATTCTCATGTTCATGCAGGAAGTCAATTGGGACTTATACCTATAGATAGAGCTTGCAGTTTGAAAGAGCATCATACC TATGACCATGACTTGCCTTGTGACGAGGAGATTCATGCTAAAGGGAGTTTACCATTCACCAACAAGTCACCAAGAAGTAG TGCGAAGAAGCAATGTCTTTTCCCCTCATTCCATGCAGAATCAAGTTGCAGTTCTGCAGAGGTCACCGATCAAAATTTCA AGGATGAAGTAGCCAGTTCAAGCACCATGCCCATGGCTAAAAGGTTGAAGACAGCTGCAGCAGATGGTTCAAGTAGAGAT CAAGTTGTGCCGTTTGAAAAGTTTCACACATCAGATGTTTCAAATGCAACCTCGGAAAAGAAAGAACATGAATTGCAATC GGAGCTCCGAGCGAGCATTCACATCCCGAAGTCTGATCTGCGTTACTTTCTAAAGGGTAGGTAA
Protein sequence (LotjaGi4g1v0074600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDLRLHRDLQSPPVLSDPELTRSGSASSSSAITADKEFSRNCTDSSFPDESARWTDQQHSLYLSSLEASFVNELHRSI NLRGWSFQNNTDGAYKHRTLQKSVNMPKQSLALQDGCQKKTKLERIAPMLESTADSHVHAGSQLGLIPIDRACSLKEHHT YDHDLPCDEEIHAKGSLPFTNKSPRSSAKKQCLFPSFHAESSCSSAEVTDQNFKDEVASSSTMPMAKRLKTAAADGSSRD QVVPFEKFHTSDVSNATSEKKEHELQSELRASIHIPKSDLRYFLKGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 53 | 53 | - | – | |
| PANTHER | 2 | 286 | 285 | 4.2E-61 | – | |
| PANTHER | 2 | 286 | 285 | 4.2E-61 | – | |
| MobiDBLite | 18 | 53 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0074600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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