Transcript — View — Lotus Base

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LotjaGi4g1v0077200.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0077200
Transcript ID	LotjaGi4g1v0077200.1
Lotus japonicus genome version	Gifu v1.2
Description	Glycosyltransferase; TAIR: AT2G15490.3 UDP-glycosyltransferase 73B4; Swiss-Prot: sp\|Q8W3P8\|AOG_PHAAN Abscisate beta-glucosyltransferase; TrEMBL-Plants: tr\|A0A067XT81\|A0A067XT81_CICAR Glycosyltransferase; Found in the gene: LotjaGi4g1v0077200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:9910935..9913343) extracted from Lotus japonicus Gifu genome v1.2.

CTTAGAGTTTATAAAGACATGTGTTACAATATTATTGGAACACTTCTTTAAAGGGTAATTTAACTCAATTTTTACATAGG ATTATTTAGAAAACCCCTTTTATTGAACATACAATTATTCATGCACTAGTTTTACAGTTTTACTTGTACATGTGACTTGT CAATTTTGGTTGACTGATCCATCCAATGAGTCAAAGTGTCAAACACCAAGTCAAATAAACAAGCCAATCTGCCTGCAATA TGTCACTGATTACGTTTTTGCGTCAACCTTTTCTCTGCATCGTAATGCGAACCATCGAATCTATAAACCAATCTCATCTT CAAACCAAAATAAACAAACTGAATCTCTCATCACATTTCCCACTTCCATCATCTCCTTCATCTCAATCCATTTCATTTCA AACATGGACACTGAAACTAGTTCAGTCAAAATGTTCTTCTTCCCCTTCGTTGGTGGAGGCCATCAAATCCCAATGGTAGA CACAGCAAGAGTCTTCGCATCTCACGGAGTCACCTCAACAATCCTAACCACACCTTCCAACGTTCACCATTTCCAAAACT CAATCACTCGCGACCAAACCTCTGGTCTCCCCATCACCATTCACCTCCTCACTGAACAATCCCCCATAACAGACACAGAC ATGACCGCAGGCCCCATGGTCGATACCTCGTCCCTCCTCGAACCTCTGACACAGTACCTCGTTGATCACCGACCTGATTG TGTTGTTGTCGACATGTTTCATCGTTGGGCAGGTGACTTGCTACACGAGCTCGGAATCCCACGAATTGTCTTCACCGGAA ACGGGTGCTTCCCTCGCTGTATAGTTGACAATATGAGAAAGCACGACGTGCTTCAGAATCTGAGTTCAGATTCAGAGCCT TTTCTAGTTCCGGGTCTTCCTCATAGAGTCGAGTTGACAAGGTCTCAGATTCCCATTTTCATGCGGAACATTTCTCAAGG ACCTGATAGGCTAAAGCAATTAGAGGAGAAAAGTCTTGGCACTGTTATCAACAGCTTCTATGGATTGGAGCCAGATTATG CTGATTACGTTAGAAATGAGTTAGGAAACAAAGCGTGGCTTGTAGGACCAGTTTCTCTTTGCAACAGAACTGTGGAGGAT AAAACAGAGAGAGGGAAGAAACCCACCATTGATGAACAGAGTTGCTTGAATTGGCTGAATTCTAAGAAACCCAATTCTGT TGTTTATCTCAGTTTTGGAAGCTTTGCTGGCATGGCAGAAAAACAGCTCAAGGAAATTGCTTATGGCCTTGAAGCTTCTG ATCAATCGTTCATTTGGGTGGTGGGGAAGATTCTCAACTCATCAGAAAATGGGTCTGAAAACTGGCTTCCAGATGGGTTT GAACAGAGGATGAAGGAACAGGGTAAAGGGTTGATTCTGAGAGGTTGGGTACCTCAGATTTTGATACTGGAGCATGAAGC AGTTGGGGGGTTTGTGACTCATTGTGGGTGGAACTCGACGGTGGAAGGTGTTTGTGCGGGGGTTCCGATGATCACGTGGC CGTTGACGGCGGAGCAGTTTTTGAATGAGAAGCTGATAACGGAGGTGTTGAGGGTTGGGGTTCAGGTGGGGAGTAAGGAG TGGGGGTCGTGGGAGGGAGAAAGGAAAGAGGTGGTGGGGAGGGAGAAGGTGGAGGTGGCGGTGAAAAAGGTGATGGTGAA GAGTGAAGAGGTGGAGGAAATGAGAAGAAGGGTCAGAGAGATTGCAGGGAGTGCTAGGAAAGCTGTTGAAGAAGGTGGAA CTTCCTATGGAGATGTTGATGCTTTAATTCAGGAGCTTAAAGCTCGTAGATTGGCTAGCCATGTTTAGATTGTTAAGTTA GCCCATGGGGTTACTTGTTTTTACATGTCAACTAGGTGTTTGTTTGGTTTTCAGCTAGGAAGTTTGTTTGAAGCATTAGA ATCTGAGATCACGATTTTCAATGCACATTCAGCCAACAAAATGCACTTGTTGAGTTGAGTAAATGTGCTACCACATTCAC CAAACTGAAAACCAAACAGGCACTACGTCTATGTTTAGACTCTTGAGGATATAAGAGCATGTCCACAACATAGTTGGTTG CTTATCACGACCCAAAATACCATATGAGTTATAAGTAATTGATACAAATTTCGTTTCAATATGAATTCTTATTTTACTTT AGGTTAGATCTCATAATTTTCGGTTGCTTGTGGAAGAAATATTTGCTTAAATATAAGCAACTAACAACATATGTAGATCT CCTTGGATACACACCCAAGTTAAGCAATAGTTCTTGAAATATTGAAAATCGTCTAAGAGATGATTTAGATATCTCTAATC AAGCAACTTTGATATATTGCCACACACTCTTTTTTTATCCCATTTCTATTGTGCTATTAAACTCGATTTAAGGATTGCTC CGATTTGGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0077200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACTGAAACTAGTTCAGTCAAAATGTTCTTCTTCCCCTTCGTTGGTGGAGGCCATCAAATCCCAATGGTAGACAC AGCAAGAGTCTTCGCATCTCACGGAGTCACCTCAACAATCCTAACCACACCTTCCAACGTTCACCATTTCCAAAACTCAA TCACTCGCGACCAAACCTCTGGTCTCCCCATCACCATTCACCTCCTCACTGAACAATCCCCCATAACAGACACAGACATG ACCGCAGGCCCCATGGTCGATACCTCGTCCCTCCTCGAACCTCTGACACAGTACCTCGTTGATCACCGACCTGATTGTGT TGTTGTCGACATGTTTCATCGTTGGGCAGGTGACTTGCTACACGAGCTCGGAATCCCACGAATTGTCTTCACCGGAAACG GGTGCTTCCCTCGCTGTATAGTTGACAATATGAGAAAGCACGACGTGCTTCAGAATCTGAGTTCAGATTCAGAGCCTTTT CTAGTTCCGGGTCTTCCTCATAGAGTCGAGTTGACAAGGTCTCAGATTCCCATTTTCATGCGGAACATTTCTCAAGGACC TGATAGGCTAAAGCAATTAGAGGAGAAAAGTCTTGGCACTGTTATCAACAGCTTCTATGGATTGGAGCCAGATTATGCTG ATTACGTTAGAAATGAGTTAGGAAACAAAGCGTGGCTTGTAGGACCAGTTTCTCTTTGCAACAGAACTGTGGAGGATAAA ACAGAGAGAGGGAAGAAACCCACCATTGATGAACAGAGTTGCTTGAATTGGCTGAATTCTAAGAAACCCAATTCTGTTGT TTATCTCAGTTTTGGAAGCTTTGCTGGCATGGCAGAAAAACAGCTCAAGGAAATTGCTTATGGCCTTGAAGCTTCTGATC AATCGTTCATTTGGGTGGTGGGGAAGATTCTCAACTCATCAGAAAATGGGTCTGAAAACTGGCTTCCAGATGGGTTTGAA CAGAGGATGAAGGAACAGGGTAAAGGGTTGATTCTGAGAGGTTGGGTACCTCAGATTTTGATACTGGAGCATGAAGCAGT TGGGGGGTTTGTGACTCATTGTGGGTGGAACTCGACGGTGGAAGGTGTTTGTGCGGGGGTTCCGATGATCACGTGGCCGT TGACGGCGGAGCAGTTTTTGAATGAGAAGCTGATAACGGAGGTGTTGAGGGTTGGGGTTCAGGTGGGGAGTAAGGAGTGG GGGTCGTGGGAGGGAGAAAGGAAAGAGGTGGTGGGGAGGGAGAAGGTGGAGGTGGCGGTGAAAAAGGTGATGGTGAAGAG TGAAGAGGTGGAGGAAATGAGAAGAAGGGTCAGAGAGATTGCAGGGAGTGCTAGGAAAGCTGTTGAAGAAGGTGGAACTT CCTATGGAGATGTTGATGCTTTAATTCAGGAGCTTAAAGCTCGTAGATTGGCTAGCCATGTTTAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0077200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTETSSVKMFFFPFVGGGHQIPMVDTARVFASHGVTSTILTTPSNVHHFQNSITRDQTSGLPITIHLLTEQSPITDTDM TAGPMVDTSSLLEPLTQYLVDHRPDCVVVDMFHRWAGDLLHELGIPRIVFTGNGCFPRCIVDNMRKHDVLQNLSSDSEPF LVPGLPHRVELTRSQIPIFMRNISQGPDRLKQLEEKSLGTVINSFYGLEPDYADYVRNELGNKAWLVGPVSLCNRTVEDK TERGKKPTIDEQSCLNWLNSKKPNSVVYLSFGSFAGMAEKQLKEIAYGLEASDQSFIWVVGKILNSSENGSENWLPDGFE QRMKEQGKGLILRGWVPQILILEHEAVGGFVTHCGWNSTVEGVCAGVPMITWPLTAEQFLNEKLITEVLRVGVQVGSKEW GSWEGERKEVVGREKVEVAVKKVMVKSEEVEEMRRRVREIAGSARKAVEEGGTSYGDVDALIQELKARRLASHV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	10	466	457	8.79E-109	–
CDD	cd03784 View details on cd03784 Search for proteins/transripts with this domain View external data on cd03784	12	454	443	7.74689E-75	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	12	455	444	5.5E-123	–
PANTHER	PTHR11926 View details on PTHR11926 Search for proteins/transripts with this domain View external data on PTHR11926	171	387	217	1.5E-33	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	244	446	203	5.5E-123	–
Pfam	PF00201 View details on PF00201 Search for proteins/transripts with this domain View external data on PF00201	255	387	133	3.5E-21	IPR002213 Show description in modal box View details on IPR002213 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00375 View details on PS00375 Search for proteins/transripts with this domain View external data on PS00375	335	378	44	-	IPR035595 Show description in modal box View details on IPR035595 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0077200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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