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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0079100 |
| Transcript ID | LotjaGi4g1v0079100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9XBN7|BLAB4_ELIME Metallo-beta-lactamase type 2; TrEMBL-Plants: tr|A0A0B2R7K0|A0A0B2R7K0_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0079100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10320292..10323023) extracted from Lotus japonicus Gifu genome v1.2.
TGCGTTTCTCAAATCTTATCTTTGAGACATCGATGTACTTATATATGTCTATTATTATTCCCTCCCTTAGTCTTTCTTTA GCAGCAAGAACCCTGCAAAGGCATGTTGGACAGCACAATCCTCCCACAATCATATCCCTTGGCTCCAAGCTCTATAGTGG TACAACATGTAGGAAATAATGGTATGCAATTTTTTCTTAACTGTCAGTTTTGGTTTTATCCACCGTTAGCTTTTTTGCAA TATGGCTGGTTACTCAATTAAATGGTTTTTTAGTCTTTGTCTTTGGTTACATCTTTTACCTTCAAAGGCTTTAAAACTAT TTTAATGGACTTTGTTTTTATAACATTTAATTTAGTCACCATCTTGGCTTCGGATTGGATTTCAATGCTAGGAGGATCGA AGTAAAAGAGAGGATATGACCCTTTTTATAAGAGTAGGAGGAATAAACCTTGACAAGATTGAAAAACAAAAAAAGAAGTT TGATCATCTCATTTTATTTTCTGAGCATTGCTGTAGAGATTTGGTTTTGAGTACAAAGGACTTAGCATGTGGTTGTGTTA ACTTTGAAGAGTCACTCCATCACTGGATTGCACTGTGGTTTGCCGAAATTTCAGTTTTCAAAACAGTGGTTCGTTTAGGG CGCAATTTTTTTCCCTTTTTTTTTCAATAATTTGAAAGCAAAAAATTATTCGTTATTTGCGTTGATGACGTTGCTGCTAA ACAAAACGAGAACGGAAAAAGCAAATTGCCAAAAAAAGTACTGTTATATCTCATGAAATTATGAAAATTGTGAGCATATT TTTTTGTTTAGTTTATTCATGGTATAGCAGAAGCCAAACGTATCATATATGACAAAAGTATTGACCATATTGATAAATGT TTATCTTTCGGATCATTGGCTACTTATTCTCTATTTTGATGTTATGAAATTATTGGGAAAGTGATACAATAAGTAGAGTC GTCATTCTGTCAAAAAAAAAAAAAAGTAGAGTCGTCATGAAAAAAGAAAAAAAGAAAATAAAAATAAATAACAACTAGGC AGAGCTAATTCATGAGAAGTGGAATTTTCAAGGGAACAAATGACTCAATGCTTCCGCCAAAAAAGATTTGTTAATAAAAG TGCTATTATTCTACCATGATATCTAAACTAAAATGTTTTATGGTTGTTTACATTTTCTTTTATGCGGAGGAAAGGATAAA TAGAATTTAAAATAAAATGATTGATATTTTATTGCTTAGTTCTGGTAGGCATAAGAATAAGTGGGTGAAAGCTTTTTTAA ATGCTTGCTATATTCTTAACAAAGTTTTTAGTTCATCTGGTTCATAACGGCGTACCGGCCAGCTTTGAGGTGTTGCTGCA CCGGGTTCAGGCGCTGATATGCGCGAACAGCAGCGGTATTGAGGCAGCAGCTCCAGCTCGCGTGGAGGACTCTGATAGTT TGGCGAAGACCGATTGGCAACACAATAAAGCTCAATTTCGACGCCTCTTGGACAGCTACAAGTGGTGCAGGATTTGGTAT GATCGCTAGGAATAACAATGGTGATGTTATGGCCGCGGCTGCTCTTGACTCTATAAGTGCAGCTTCTGCATTAATGCCTG AAGCACTAGCGTTCCGATGGTGCGTATCTTTGGCTAAGGACCTTGGATTCTTCCGGGTGGTGTTCGAAACAGATTGTCTC CAATTATTTGAGGCTTGGAAGAAGAATAGGCCAGGAGGTTCTTATTTATTTTCTGGTTTGAATGATTGTCGAGACATGGT CTCTTTCTTTACTAGTTTTGATTTGTCTTTTGTTCGCCGTTCAGGAAACAGTGTGGCTGATTTCTTGGCTAAGAACTCCT CAAAATTTTCCAACGTTGTTTGGATTGAGGAGGTTCCCCCGGAATTGGACCTTTTGGTGACTTCGGATGTATTAGCTTCT ATGGCGTTTTGATTTAATATATTATCCATTTTCAAAAAAAAAACAAAGTTTTTGGTATTTTTTGCGAGAACTCTCTAAGT GGGTGAATGCTTGTTTATCATCATACTCTCTAAAGTTTTTGCCACTGCTGGGTTTCGCTGGTCTGTTTTGCTCTACAGCC AGTACCTCTAGACTTGAAGGGAGGAATATGTTGGACAATGTTTTGATTGTCAATTAGTGCTGCCTAAGTTGATTGATTTG AATCAATTTGCTTTCTTTGGAGGGAGGAATATGTTGGACTGTGTTTTGATTGTCAATGAAGTTGTTGATGAAGCAAAGAA GAAAAGAAAGCCAACAATTATCTTCAAGGTGGACTATGAGAAGGCGTATGACTCTGTAAGATGGGATTTTCTCTTATATA TGTTACAAAGGATGAATTTTTGTAGCCGGTGGATCAACTGGACTTAAGGTTGCTTGGAATCCAATTCAGTTTCTGTTTTG GTTAATGGTAGCCCTGGACCGGAATTTAAAATGTGGAAGGGATTACACGATATGGAGATCCGTTAGCACCATTTCTCTTT CTAGTGGTTGCGGAAGGCTTAAATGGCCTCCTCAAGAGGGCGGTTCACCTCAATAAATTCATAGGATTCAGGTTGGGTAT GCATCAAGAAGTGGAGATCTTAATGGTACAGTTTGCAGACGACACACTCTTTATTGGTGATGCAACGCCACATAATACTC TAACCTTAAAATGTGTTTTAAGATGTTTTGAATTGACTTCTGGTCTGAAGGTCAACTTTTTTAAGAGCAAATTGATTGGG ATTGCAATGGGG
CDS sequence (LotjaGi4g1v0079100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCGCTAGGAATAACAATGGTGATGTTATGGCCGCGGCTGCTCTTGACTCTATAAGTGCAGCTTCTGCATTAATGCC TGAAGCACTAGCGTTCCGATGGTGCGTATCTTTGGCTAAGGACCTTGGATTCTTCCGGGTGGTGTTCGAAACAGATTGTC TCCAATTATTTGAGGCTTGGAAGAAGAATAGGCCAGGAGGTTCTTATTTATTTTCTGGTTTGAATGATTGTCGAGACATG GTCTCTTTCTTTACTAGTTTTGATTTGTCTTTTGTTCGCCGTTCAGGAAACAGTGTGGCTGATTTCTTGGCTAAGAACTC CTCAAAATTTTCCAACGTTGTTTGGATTGAGGAGGTTCCCCCGGAATTGGACCTTTTGGTGACTTCGGATGTATTAGCTT CTATGGCGTTTTGA
Protein sequence (LotjaGi4g1v0079100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIARNNNGDVMAAAALDSISAASALMPEALAFRWCVSLAKDLGFFRVVFETDCLQLFEAWKKNRPGGSYLFSGLNDCRDM VSFFTSFDLSFVRRSGNSVADFLAKNSSKFSNVVWIEEVPPELDLLVTSDVLASMAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 111 | 111 | 8.9E-25 | – | |
| PANTHER | 1 | 111 | 111 | 8.9E-25 | – | |
| Pfam | 1 | 106 | 106 | 1.8E-19 | ||
| Gene3D | 1 | 112 | 112 | 9.6E-8 | ||
| CDD | 2 | 105 | 104 | 4.87001E-17 | – | |
| SUPERFAMILY | 5 | 109 | 105 | 5.46E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi4g1v0079100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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