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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0082000 |
| Transcript ID | LotjaGi4g1v0082000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2 domain-containing family protein; TAIR: AT1G70810.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q9SSL1|CAR7_ARATH Protein C2-DOMAIN ABA-RELATED 7; TrEMBL-Plants: tr|I3S7R4|I3S7R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0082000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10707931..10708764) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAAACATTCTGGGTCTTCTCAAACTTCGTATCAAAAGAGGCTCAAATCTAAAACCTTGCGATACTCGTACCAGTGA TCCATATGTTGTTGTCACTATGGCCGAACAGGTTCCAATTTAAAACTTATTTGATCTTTGATTATAATTTTTTTGTGCAA CCTTGATATATTTGGTTACTGTAAATCTAGCATTCATTTGATAGAACTTTGGTTCTAATTCTAATTTCTCGGCTGGGATA ATTGAAGATTTATGAATAAAGATTGGACATGATTCTTTATGGTTTATTTGTTAACACTTAATTTCTTGTTGATGCAGAAA TTGAAAACTGGTGTTTTTAAAGATGACTGCAATCCTGAATGGAATGAAGAATTGACTCTTTATATCAGGGATGTCAACAT TCTGATACATTTGGTGAGTATTGAAAATGTTCTATATCATGTCATGAGTAATTTAACAGGGCTATCATTATTAGAACAAT TTAGTATTAAATTGTTGATGGCTTTGAATTTTTGATTTTTCCCTTCAGACAGTTTGTGACAAAGACACTTTCACGGTTGA CGACAAAATGGGCGAGGCAGAAATAGACATAAAGCCGTATCTTCATTGTGTGAAGATGGGGTTGAGCGATCTCCCAGATG GCCATGTAATCAAGAAGGTTCAACCAGATAGGACTAACTGCCTCACTGAAGAGAGTAGCTGCGTATGGCGAAATGGAAAA GTCATCCAAGAGATGAGTTTAAGATTGAGGAATGTGAAGTCTGGCGAAGTATTTGTGGAAATTGAGTGGGTTGATATAAC AGGTTCCAATGGTCTATCAGAGGTTGAGCTTTAG
CDS sequence (LotjaGi4g1v0082000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACATTCTGGGTCTTCTCAAACTTCGTATCAAAAGAGGCTCAAATCTAAAACCTTGCGATACTCGTACCAGTGA TCCATATGTTGTTGTCACTATGGCCGAACAGAAATTGAAAACTGGTGTTTTTAAAGATGACTGCAATCCTGAATGGAATG AAGAATTGACTCTTTATATCAGGGATGTCAACATTCTGATACATTTGACAGTTTGTGACAAAGACACTTTCACGGTTGAC GACAAAATGGGCGAGGCAGAAATAGACATAAAGCCGTATCTTCATTGTGTGAAGATGGGGTTGAGCGATCTCCCAGATGG CCATGTAATCAAGAAGGTTCAACCAGATAGGACTAACTGCCTCACTGAAGAGAGTAGCTGCGTATGGCGAAATGGAAAAG TCATCCAAGAGATGAGTTTAAGATTGAGGAATGTGAAGTCTGGCGAAGTATTTGTGGAAATTGAGTGGGTTGATATAACA GGTTCCAATGGTCTATCAGAGGTTGAGCTTTAG
Protein sequence (LotjaGi4g1v0082000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENILGLLKLRIKRGSNLKPCDTRTSDPYVVVTMAEQKLKTGVFKDDCNPEWNEELTLYIRDVNILIHLTVCDKDTFTVD DKMGEAEIDIKPYLHCVKMGLSDLPDGHVIKKVQPDRTNCLTEESSCVWRNGKVIQEMSLRLRNVKSGEVFVEIEWVDIT GSNGLSEVEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 168 | 168 | 3.7E-102 | – | |
| PANTHER | 1 | 168 | 168 | 3.7E-102 | – | |
| ProSiteProfiles | 1 | 87 | 87 | 12.736 | ||
| SUPERFAMILY | 2 | 157 | 156 | 8.25E-26 | – | |
| SMART | 7 | 102 | 96 | 1.2E-15 | ||
| Pfam | 7 | 92 | 86 | 2.4E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0082000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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