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LotjaGi4g1v0089900.4

Overview

Field	Value
Gene ID	LotjaGi4g1v0089900
Transcript ID	LotjaGi4g1v0089900.4
Related isoforms 4	LotjaGi4g1v0089900.1 LotjaGi4g1v0089900.2 LotjaGi4g1v0089900.3 LotjaGi4g1v0089900.5
Lotus japonicus genome version	Gifu v1.2
Description	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT1G26850.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|B9DFI7\|PMT2_ARATH Probable methyltransferase PMT2; TrEMBL-Plants: tr\|I1KXT4\|I1KXT4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0089900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:11918063..11919549) extracted from Lotus japonicus Gifu genome v1.2.

ATGACAACACAAAGTGGAGAAAGCATGTAAATGCTTACAAGAAAATTAATAGACTGTTGGACACCGGAAGATATCGCAAC ATTATGGATATGAATGCTGGTTTGGGTAGTTTTGCTGCAGCTATTGAATCTTCTAAGTTATGGGTTATGAATGTTGTGCC TACTATAGCTGAGAAAAATACATTGGGTGTCATATACGAGCGAGGTCTGATTGGCATCTATCATGATTGGTATGGTTTCA TAACTTCTTGATCCTATTTTATTCATCTTAGTTCTCGATCTTAAGTGCTTAGATACCTATTGTGACTGTACCAGTCTTAT AGTATAATTCAATTAGTTCTCAATTATCTGATAGTATGACTTGAAATAGTTTTCCAATGCTGTAATGTGCTTTCCTGCAA TTATATATCTGACCATAACCTGTAAATTTTGAACAGTCAGCTATTTCATCATTGTTTTCCTTATTTTTTGTTCTCTTTTC ATCCAGGTGTGAAGGCTTTTCCACATATCCAAGGACATATGACCTCATTCATGCCCATGGCCTCTTTAGCCTGTACAAAT CTAAGTAAGTGCTCCTTTGGTCAAATGGCTTTTCTACTATTCATCTTTGTTAATTCCTATTTAAAACCGGAGTAAATTTT TAACGCTTATTTTCCCACTGAGTGGCATCGGCCAAACTAATCAAAGATGCTATGATATCCTATCATGAATCAGTCTAATG ATAGACCATTTATTATATCTTCCAAAAACACAGAATAGACCTATCTTTGCTTTAAAAGCTAGCTCAAATGTGAGGATTGC TCTATCCTTTATAATGACTTATTTGGTCATATATCTCTAGTCAATCAGAGACCTTTAACCTATCTAAACCTCTCTTAAAT AATTTGGATTTAGCTTTTGTATGGTCAAAGTATTGATGCCATAAATCAGATCATTGTAAAAATATTGATGCCCTCAAGTT ACCATTACAAGGTAGTAGATTATATTATCATCACATGGTTTCGTAGTTCTGCATTACTTGTGTGGTATTTTATGATGTTA TGTGGGCTAGTCAGCTGGTGATTAGGTTGTATAACGAGAGTGCGATAACAGCTCATATGTGGTTTTTGTTGAATTAAGCA TTCAAAATGTTGCCTGGAATGTGGATTTAGCATCCCATTAGCAGAAGAAACACTTTTCTTTTTAGTTCTCTTGAGTTCCT TTCTGTCGAAGTTGTGTGTTCATTCTTGTGCCTCAAGCATGTGTATGATAATCAAATGCAGATGCAATATAGAAGACATT CTTCTCGAGATGGACCGGATTTTGCGACCAGAAGGTGCTGTCATATTCCGCGATGAAGTTGATGTTTTAATCAAGGTAAA GAAACTTGTTGGAGGAATGAGATGGGATACCAAATTGGTTGACCATGAGGATGGTCCTCTTGTTCCTGAGAAGGTACTAA TTGCTGTGAAGCAGTATTGGGTCACTAATTCCACGTCAACACAATAG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0089900.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATATGAATGCTGGTTTGGGTAGTTTTGCTGCAGCTATTGAATCTTCTAAGTTATGGGTTATGAATGTTGTGCCTAC TATAGCTGAGAAAAATACATTGGGTGTCATATACGAGCGAGGTCTGATTGGCATCTATCATGATTGGTGTGAAGGCTTTT CCACATATCCAAGGACATATGACCTCATTCATGCCCATGGCCTCTTTAGCCTGTACAAATCTAAATGCAATATAGAAGAC ATTCTTCTCGAGATGGACCGGATTTTGCGACCAGAAGGTGCTGTCATATTCCGCGATGAAGTTGATGTTTTAATCAAGGT AAAGAAACTTGTTGGAGGAATGAGATGGGATACCAAATTGGTTGACCATGAGGATGGTCCTCTTGTTCCTGAGAAGGTAC TAATTGCTGTGAAGCAGTATTGGGTCACTAATTCCACGTCAACACAATAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0089900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDMNAGLGSFAAAIESSKLWVMNVVPTIAEKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHAHGLFSLYKSKCNIED ILLEMDRILRPEGAVIFRDEVDVLIKVKKLVGGMRWDTKLVDHEDGPLVPEKVLIAVKQYWVTNSTSTQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10108:SF1089 View details on PTHR10108:SF1089 Search for proteins/transripts with this domain View external data on PTHR10108:SF1089	1	144	144	8.4E-91	–
Pfam	PF03141 View details on PF03141 Search for proteins/transripts with this domain View external data on PF03141	1	138	138	8.5E-67	IPR004159 Show description in modal box View details on IPR004159 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR10108 View details on PTHR10108 Search for proteins/transripts with this domain View external data on PTHR10108	1	144	144	8.4E-91	IPR004159 Show description in modal box View details on IPR004159 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	2	100	99	3.92E-9	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0089900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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