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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0092900 |
| Transcript ID | LotjaGi4g1v0092900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BZIP transcription factor; TAIR: AT2G22850.1 basic leucine-zipper 6; Swiss-Prot: sp|Q9SI15|BZIP2_ARATH bZIP transcription factor 2; TrEMBL-Plants: tr|G7JF85|G7JF85_MEDTR BZIP transcription factor; Found in the gene: LotjaGi4g1v0092900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12480309..12482357) extracted from Lotus japonicus Gifu genome v1.2.
CCCCAATTCTCCTTCTTACCCCTCTAATTTCCAAAAATTCCGTCCCTCTGTCCCCATCATGCTTTCCGCCATTCTTCCCT CCGACCCTCTTCTCAGCAACCCATTCTCCGCCTTCGCCGGCGGTTTCACGCCGCCGTGGGACTGCCACGATGACCCCTTA TCCGATTACCTCAAACCCAGTACTGAACCCAAACCGGTAACTTCAAGTTCCGGTTCTGGCGGACCGATCCTAACCCATGA GAAACGTAAACCGGACCCGGACGAACCGGACCAGAGTGCTGAGCCGGTAATCGACGAGCGGAAGCGGCGGCGCATGATAT CGAACCGGGAATCGGCGCGTAGGTCGCGTGTGCGTAAGCAGAGGCACCTAGAGAACCTTCGGAACCAGTTGAACAAGTGT AGGATGGAAAACCGGGAACTGAACAACCGGTTGCAGTTCATCTTGTATCACCTTAACCGCGTGCGAACCGAAAACGAATG GCTCCGGTCTGAGCGAACCGTGCTCCAGGAACGAATTTCCGAATATGCCCAAATTTTGGTTTTGCAACAATTGCAACCTT CTTTCTCCACTGCATGGAATTGCAATTTGACAGAATAAAACCCACCTTGATTAAGCAAGTAAATTAATCACAAATATATA TGATCTCGGTTAAAATTCTAAGACAAGGAACTTGTCTAAGTTATATATCTATATATGTAAATCATTAAAAGTAGCTAGAT GAAGATAAACGGTGGGGGTATTTTTGGAAAAAATAGGAGTGGTTTTGGAAAATATTGTTGATTTTTTCAAAGCCATAAGG TTAATATGATCAATTATAATTTTATTTATGTAAAATATATATATCCTAGCCATTTTTGTTTTTATTTTTGTATGAGTTTC TTATGTAGCAGCTTGTTCATCAAATCATTTCCCAGTCCAAATTAATTTTGAGGTGAAGACTAAAGATAGCTAGCATTACA GTTTCTCAGTGTCAGAATCGATATTGCCTCATAATTCAATCTCATCTTTATATAGCTACGGCAGTTAGCAAATTAAATGA CACCTTGCCAGGGAAAAAAGAAGAAGAAAATAAAGAAGATATAACTCGAATGACAAAAACGTGTAATATTTGACTATGAG TGCATCGATCTCATAAGCTTGTACTAAACGCAAAAGGTCTTATGTCCCAGTCCAACCTGGAAGTACATGTTATATCAACC ATGGTCCATGGGCAATACCATCCTTTTGCATCTATATATCATGGCCTTTTAAATTTAGAGTCCATTTGAATAGTCTTATT AAAGTTTTTCAACTAAAAAATTGATACATCACTAAATAAACTTGCTTTTTAGTTCGCACTCAAAGGGATTAGTGGCAAGT TATAGATACATAAATACACCTACTGTGAGTGTTTGTTTACACTGACACATATGGAACATAACCAAAAGCGAGAATCAATA TTGGTCAAGCAAGCACAATATAATGTTCTCTCTAGCTTTCTTTTTAGATGGAAGTTTAATTAAGGATTTTCTTCATGCAT GAAAGTCTAATTATGATGCACTATTAAAAAATGAAAAATGTATATTTTATAACGTGTAACTCTATTGATTGACAATAAAT AATGCTAATTAACATATATTATTGGGCAAATACTATTTACACCGTGGCTTTCTAGCGGATTTAGATTCAAACTTTTTGTA GATTTACCTATAATTTTTTCTTGCAGAATTTTCAACAAAGTTTCCTACGGGTTTGAAGTAAAAACGCTTTAATTTGCAGA AAAACTCACATGTAAATCCGTCCAAAAAAGTTCACAGGAAAATTCCTAATAATGCTTTAGTTTTCACATTCTGGAAGTTT AAACCGCCATAAAAACCGGGGTTGTCTAAATGACCCATTATAAAGTTTGAGTTAAATAACTCATCATTCAATTACATTGG AGATAAGTGAGTTGGAGTTTCTATATTTTATTGATTAATTTATTTCTAACTCATTTATATTCAATGTGATTGGATGATGA ATTATTTAACTCAAACTTTATCATGGGTCATTTAGACAACCCCTAAAAA
CDS sequence (LotjaGi4g1v0092900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCCGCCATTCTTCCCTCCGACCCTCTTCTCAGCAACCCATTCTCCGCCTTCGCCGGCGGTTTCACGCCGCCGTG GGACTGCCACGATGACCCCTTATCCGATTACCTCAAACCCAGTACTGAACCCAAACCGGTAACTTCAAGTTCCGGTTCTG GCGGACCGATCCTAACCCATGAGAAACGTAAACCGGACCCGGACGAACCGGACCAGAGTGCTGAGCCGGTAATCGACGAG CGGAAGCGGCGGCGCATGATATCGAACCGGGAATCGGCGCGTAGGTCGCGTGTGCGTAAGCAGAGGCACCTAGAGAACCT TCGGAACCAGTTGAACAAGTGTAGGATGGAAAACCGGGAACTGAACAACCGGTTGCAGTTCATCTTGTATCACCTTAACC GCGTGCGAACCGAAAACGAATGGCTCCGGTCTGAGCGAACCGTGCTCCAGGAACGAATTTCCGAATATGCCCAAATTTTG GTTTTGCAACAATTGCAACCTTCTTTCTCCACTGCATGGAATTGCAATTTGACAGAATAA
Protein sequence (LotjaGi4g1v0092900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSAILPSDPLLSNPFSAFAGGFTPPWDCHDDPLSDYLKPSTEPKPVTSSSGSGGPILTHEKRKPDPDEPDQSAEPVIDE RKRRRMISNRESARRSRVRKQRHLENLRNQLNKCRMENRELNNRLQFILYHLNRVRTENEWLRSERTVLQERISEYAQIL VLQQLQPSFSTAWNCNLTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 177 | 169 | 2.5E-65 | – | |
| PANTHER | 9 | 177 | 169 | 2.5E-65 | – | |
| MobiDBLite | 30 | 99 | 70 | - | – | |
| MobiDBLite | 42 | 56 | 15 | - | – | |
| MobiDBLite | 59 | 94 | 36 | - | – | |
| SMART | 77 | 141 | 65 | 1.6E-8 | ||
| ProSiteProfiles | 79 | 142 | 64 | 10.243 | ||
| Gene3D | 81 | 129 | 49 | 2.4E-9 | – | |
| SUPERFAMILY | 81 | 129 | 49 | 1.45E-9 | – | |
| CDD | 82 | 129 | 48 | 7.23784E-16 | – | |
| ProSitePatterns | 84 | 99 | 16 | - | ||
| Coils | 90 | 124 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0092900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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