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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0093400 |
| Transcript ID | LotjaGi4g1v0093400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | VQ motif protein; TAIR: AT2G22880.1 VQ motif-containing protein; Swiss-Prot: sp|Q9SZG3|VQ29_ARATH VQ motif-containing protein 29; TrEMBL-Plants: tr|G7JF76|G7JF76_MEDTR VQ motif protein; Found in the gene: LotjaGi4g1v0093400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12576467..12577477) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTATTCACAAATATCTCACTGCATTAGAAAACAGAACAGTAACCAAGCAAGTTAGCTGCCTTGTTTTTATCTTGAGA TTCGACCTTGCAAGACCATGGAATCTTATTCCTCTTCTTACTCTTCATCCAAATCTTCATACATGTCCCAAACTTCTGAG GAGTCAAAGGGGCTGAAAAATGCATACCCTTATCAGTCTCATTCCTTGCTTCATTCTGTGAGGAAGACACCTGCAAAGTC ATGGAAAAAGAAGTTACCAGTGGCACCAATGCCTCCAACACCTGTTAAGATCTACAAGGTGGATCCTATCAACTTCCGAG AACTTGTTCAGCAGCTTACTTGTGCACCTGAGTTCAAACCTTCTCATCAACCTCATGAACAAGTTCTTCAAAGCATCGAA AATGCTACCACTAACTCTTCCTTTCATGTTCATTCTGCTCCAGTGCAAAACACTTCAATCAGAGACACTGCTGCATTGAC CCTACCAATACCATTACCAGTGTGCACTAACAACTGGTACCAGGGCTTGCAATCTGAAGCTTTTGATGTGAATTCTCAGG AGACTGTTGCTGATAGGGCAGTAATACCTGCTTGGCTGGAAATGCTTTTGTTTTCACCAACTTCTTTTAGTAATGGGTGT TTCTTTCCTCCTTTGAGCCCAAAAATAATGTGACTTGTTTGAAAGTAACCTTTTAGAATGGATTTTGTACCTTATCTATG TCACTACTGTATCGGATATGTAGATAATGGAGTCATCCCAGCATCAGCGGCCTCTGGACTCCTGCAGCTGCTGTGTTTAC ACCATTCTTATATGAATAAGCTATTGCTTTGTAATTTTGTCATGTTATGTCATTTTTTCTGTACTGTGCTGCAGTTTGTA AATGTGCTATTATTATGTAATTTTGTCATGTTCTGTCATTTTTTCTCTACTGCAGTTTGTAATTTGTTAGAAAAATTGAT TTACTAGTTTTTGTTTTACCATTAGCATAGAAAATAAAAATTAGTTTGATG
CDS sequence (LotjaGi4g1v0093400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTTATTCCTCTTCTTACTCTTCATCCAAATCTTCATACATGTCCCAAACTTCTGAGGAGTCAAAGGGGCTGAA AAATGCATACCCTTATCAGTCTCATTCCTTGCTTCATTCTGTGAGGAAGACACCTGCAAAGTCATGGAAAAAGAAGTTAC CAGTGGCACCAATGCCTCCAACACCTGTTAAGATCTACAAGGTGGATCCTATCAACTTCCGAGAACTTGTTCAGCAGCTT ACTTGTGCACCTGAGTTCAAACCTTCTCATCAACCTCATGAACAAGTTCTTCAAAGCATCGAAAATGCTACCACTAACTC TTCCTTTCATGTTCATTCTGCTCCAGTGCAAAACACTTCAATCAGAGACACTGCTGCATTGACCCTACCAATACCATTAC CAGTGTGCACTAACAACTGGTACCAGGGCTTGCAATCTGAAGCTTTTGATGTGAATTCTCAGGAGACTGTTGCTGATAGG GCAGTAATACCTGCTTGGCTGGAAATGCTTTTGTTTTCACCAACTTCTTTTAGTAATGGGTGTTTCTTTCCTCCTTTGAG CCCAAAAATAATGTGA
Protein sequence (LotjaGi4g1v0093400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESYSSSYSSSKSSYMSQTSEESKGLKNAYPYQSHSLLHSVRKTPAKSWKKKLPVAPMPPTPVKIYKVDPINFRELVQQL TCAPEFKPSHQPHEQVLQSIENATTNSSFHVHSAPVQNTSIRDTAALTLPIPLPVCTNNWYQGLQSEAFDVNSQETVADR AVIPAWLEMLLFSPTSFSNGCFFPPLSPKIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 189 | 189 | 3.3E-37 | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 189 | 189 | 3.3E-37 | ||
| Pfam | 62 | 81 | 20 | 4.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0093400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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