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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0093500 |
| Transcript ID | LotjaGi4g1v0093500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytanoyl-CoA dioxygenase domain-containing protein 1; TAIR: AT4G37700.1 hypothetical protein; Swiss-Prot: sp|Q55638|HYPF_SYNY3 Carbamoyltransferase HypF; TrEMBL-Plants: tr|A0A151SE89|A0A151SE89_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0093500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12584746..12585901) extracted from Lotus japonicus Gifu genome v1.2.
CTCTAAGCCCCGTTTTTTCACCAAAAAAAAATATGGCATTGCCGTGGCAGGGTGTATAAATTTGAGGAGGGGGAAAGGTT AAAAAGTGGCATATGCATATTAGGCTAAAATGTGTTAAGTTAACAGTAGCTATCTATATATCTAGCTACTTTTCATATAA AGAGCCCCATATATAGTTGCAAGCATTTGTTGAGGAATTCTCACAAGATGACAGAGAAGAAGGTTAGAAGCAAAGGAAGC AAGCTCATAAGCTACATGAAGAAGGTAAGGGACTTCTACGTCCGAGGAATGATCGCGTGGTCCGGCCACATGACCTACGC GGATGCCGCCATAGGATGCCCCACCGGCAACCTTTCCACCATTCCTAGGAGCTTCAGTGCTCATAACTCTGCCACCAGAT CAAGGGATCATGAGTTCAAGGACCTTATCAGGGCTTCTACGACGTCCCTTAAGAGCCCTCGCAATGGCGCTGCAGCGATT AAATTGCCTCGGAGTCGCAGCATAGCCATTGGAAGGATTGATGAGGACAGGCCATGTGAATTTGAAATTGATGATATTGT CAAGGTCAAACCTCTTTTTTATCGGAGGTGCAGAAGTTATGCCATTCTCAGATCAGACTTTGATAAATAAACATTTTCTA ATCGCTATGAAAGAATAAATTGTAAGGAAATGATACTAATGATCATGTTTGTTGTTCTCTTGTTTTCTTACTTATATGAG TTACATCTGTTTTAATTTGTGAAAAATAGTCATTGAGCATTCTTTCTTACTTGAGAATGTGTGGATTCTGTCTAAGTACA GATTGATTGTGTTATAATTATGTGAATTTGTTACAAATGAAAATGAATGAGTTTGATTCTCGTCTGGGAGTAGGATTTAT GTTACATTTGCCTCCTAAATACTCCTCAATTTCTTTTTTTTTTCTTCTTCCGAAATTGAGATTGCTCTGTTATTCTTGTC TTCAGAAGTGGTGTGTGACCTTAATTGGCTTGTGCGACGGAGATGTATTGACATGACAGAGGTACGCTTAAATAGCGAGA GAGCAAAAAGAAAATCTCAGAGTCTCAAAAGAACACTTTATTGTGTAATGAACAATATGTTTTTATAAATGAACAATTAC ACATGTAGTTTTAGGCTTGAACTCTATTATAGTTAC
CDS sequence (LotjaGi4g1v0093500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAGAAGAAGGTTAGAAGCAAAGGAAGCAAGCTCATAAGCTACATGAAGAAGGTAAGGGACTTCTACGTCCGAGG AATGATCGCGTGGTCCGGCCACATGACCTACGCGGATGCCGCCATAGGATGCCCCACCGGCAACCTTTCCACCATTCCTA GGAGCTTCAGTGCTCATAACTCTGCCACCAGATCAAGGGATCATGAGTTCAAGGACCTTATCAGGGCTTCTACGACGTCC CTTAAGAGCCCTCGCAATGGCGCTGCAGCGATTAAATTGCCTCGGAGTCGCAGCATAGCCATTGGAAGGATTGATGAGGA CAGGCCATGTGAATTTGAAATTGATGATATTGTCAAGGTCAAACCTCTTTTTTATCGGAGGTGCAGAAGTTATGCCATTC TCAGATCAGACTTTGATAAATAA
Protein sequence (LotjaGi4g1v0093500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEKKVRSKGSKLISYMKKVRDFYVRGMIAWSGHMTYADAAIGCPTGNLSTIPRSFSAHNSATRSRDHEFKDLIRASTTS LKSPRNGAAAIKLPRSRSIAIGRIDEDRPCEFEIDDIVKVKPLFYRRCRSYAILRSDFDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 133 | 132 | 1.8E-35 | – | |
| PANTHER | 2 | 133 | 132 | 1.8E-35 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0093500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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