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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0097900 |
| Transcript ID | LotjaGi4g1v0097900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tyrosine-protein kinase CSK; TAIR: AT5G67350.1 hypothetical protein; Swiss-Prot: sp|G5ECJ6|CSK1_CAEEL Tyrosine-protein kinase csk-1; TrEMBL-Plants: tr|G7JCT0|G7JCT0_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0097900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13242434..13244180) extracted from Lotus japonicus Gifu genome v1.2.
CCCATCTTATATATATCTTATTTTAGTGCTCTGCTACTTTACCACCTTTGATATTTCAAAGATTTTGATTCATGCAAATT CATTTTCTCTTTCATTTCATTTTCACTTTCTTTCTCTCAATATATTTCTCTTGTACTCTTATTACATTACTCATCATATC TTTCATTTATTTTTCTGTCTCCTATGTTTGGATGAGTCAGTGTGCTTTGATTGTGAATAAAACTTTATTCTATTCCAAGT TAATGTCAATATCTCTGTCCCTCTGTCACTCACATCTACCCTCTCTCCTATTTAAATGTCCTTACCCTATTTCAAAACCC TGATATTATTTTATCCTTTCCCACATTCCCCCGACAGCACCACCTTTCGAACAAAACCTATTTTGTTCCTAAACTTCCTT AGATGGCAACAAACAGTGTCCAAGGAAAACGTGATCTGGCTGAACAACAAGAAGAAGATGAAGAGGAAGAAGAAGCATTG TCCCTTTGCGATCTTCCAGTCACCATGGTCAACCACAACAACAACAACCAAGTCCAACCAAGAAAACAAGAGAACCCTCA TCATGTCAAAGAAGAAGAATTCGATTTCCGTGGCCTCTTCTCAAAGGAACCAGAAATTATGTGTGTGGCTGATGAAGTTT TCTTCCAAGGTCAAATCCTCCCATTCCGTCACTCTTTCAGCACTGAGGCTGGTTTGTTAAAATCACACGGTAATATTAAA CTTTGCAAAGCAAGATCCGAGTCATTAGGACATGGTTATGGTTCTTCTATCAATAGCAGTAGAAGCAGTAGTGTTAGAAG TCAAAACTCATCAAGCAGCACTAGCTCCACCACCACCACTACAATTAACCCAAGAATTTCCAAACCCAGATTCCAAAATC AATTTCACACACACCCAAGTCCCAAGCCTCAGTTAAATTTAAAATCCTCTGGTCCAAGACAAACAAGCTTTGGTAGAAAA TCATCAGTGTGGGAAATTTTTCGTCTTGGTGTGGTCCCTGCTCCTGAGATTGAATTGCAAGACCTCAAGGTTCGTAGTAG CAAGAACTGTGTCAGTCGCAATAGTAGTAACAGTAGCAGCAATAGTGACAAATTGGGTAGCAAAACTGATGCTACAACTA AGAGCAATCATTTTTTCAAACAACTTGTGGGAAAAAGTGGTGGATTGTTGAGTGGCTGTGATTGTTCGATTGAAACGGTG GTGCAATTTGATTCTAACATGGCAATGATCAAAAGTGGTGGTACAAAAAGCACTTATAGCAAGAAAGAGAGTGCAACAAC AACGCATGCTGTGAAAGAAAAAGTGGGCATGGAATTGAAGAAGCAGAAGCAGAGGAAAAAGCAGGGGAAGAAGGTGATGT CACGTCGTCGAACGTTTGAATGGCTAAAAGAGCTTCATGCAAACCATCTTGATGATGATGATGATGAGGAAGAGGCTCTG TTATCATGAGTGGTGTTGTCGCATGCTTGTGGTGTAATTTTGATTCATTAGTTTTACCTTTTTTTAGCAGCTACTTTTGT TCCCTTTAATTTGAATTGAATTATAATAATATTGTAGTGCAAGATCTATGATCAAAATTTCTTACTTTCTTGTTAGGCTG TCATGAATTTTTTGTGAATGAGTGGTAAAATTGATGCATGTTCAGTGTTGATAAATTCGTTCTAGAAGAAGAAATATATC AAATTTTTAATTGTGTAAAATGTGAGTAAAGTTATTTTCTTTTTTTTTGTTACATCGGAAAGATAAA
CDS sequence (LotjaGi4g1v0097900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACAAACAGTGTCCAAGGAAAACGTGATCTGGCTGAACAACAAGAAGAAGATGAAGAGGAAGAAGAAGCATTGTC CCTTTGCGATCTTCCAGTCACCATGGTCAACCACAACAACAACAACCAAGTCCAACCAAGAAAACAAGAGAACCCTCATC ATGTCAAAGAAGAAGAATTCGATTTCCGTGGCCTCTTCTCAAAGGAACCAGAAATTATGTGTGTGGCTGATGAAGTTTTC TTCCAAGGTCAAATCCTCCCATTCCGTCACTCTTTCAGCACTGAGGCTGGTTTGTTAAAATCACACGGTAATATTAAACT TTGCAAAGCAAGATCCGAGTCATTAGGACATGGTTATGGTTCTTCTATCAATAGCAGTAGAAGCAGTAGTGTTAGAAGTC AAAACTCATCAAGCAGCACTAGCTCCACCACCACCACTACAATTAACCCAAGAATTTCCAAACCCAGATTCCAAAATCAA TTTCACACACACCCAAGTCCCAAGCCTCAGTTAAATTTAAAATCCTCTGGTCCAAGACAAACAAGCTTTGGTAGAAAATC ATCAGTGTGGGAAATTTTTCGTCTTGGTGTGGTCCCTGCTCCTGAGATTGAATTGCAAGACCTCAAGGTTCGTAGTAGCA AGAACTGTGTCAGTCGCAATAGTAGTAACAGTAGCAGCAATAGTGACAAATTGGGTAGCAAAACTGATGCTACAACTAAG AGCAATCATTTTTTCAAACAACTTGTGGGAAAAAGTGGTGGATTGTTGAGTGGCTGTGATTGTTCGATTGAAACGGTGGT GCAATTTGATTCTAACATGGCAATGATCAAAAGTGGTGGTACAAAAAGCACTTATAGCAAGAAAGAGAGTGCAACAACAA CGCATGCTGTGAAAGAAAAAGTGGGCATGGAATTGAAGAAGCAGAAGCAGAGGAAAAAGCAGGGGAAGAAGGTGATGTCA CGTCGTCGAACGTTTGAATGGCTAAAAGAGCTTCATGCAAACCATCTTGATGATGATGATGATGAGGAAGAGGCTCTGTT ATCATGA
Protein sequence (LotjaGi4g1v0097900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNSVQGKRDLAEQQEEDEEEEEALSLCDLPVTMVNHNNNNQVQPRKQENPHHVKEEEFDFRGLFSKEPEIMCVADEVF FQGQILPFRHSFSTEAGLLKSHGNIKLCKARSESLGHGYGSSINSSRSSSVRSQNSSSSTSSTTTTTINPRISKPRFQNQ FHTHPSPKPQLNLKSSGPRQTSFGRKSSVWEIFRLGVVPAPEIELQDLKVRSSKNCVSRNSSNSSSNSDKLGSKTDATTK SNHFFKQLVGKSGGLLSGCDCSIETVVQFDSNMAMIKSGGTKSTYSKKESATTTHAVKEKVGMELKKQKQRKKQGKKVMS RRRTFEWLKELHANHLDDDDDEEEALLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 11 | 335 | 325 | 6.7E-91 | – | |
| PANTHER | 11 | 335 | 325 | 6.7E-91 | – | |
| MobiDBLite | 115 | 182 | 68 | - | – | |
| MobiDBLite | 117 | 182 | 66 | - | – | |
| MobiDBLite | 213 | 237 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0097900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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