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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0100700 |
| Transcript ID | LotjaGi4g1v0100700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT5G67260.1 CYCLIN D3;2; Swiss-Prot: sp|Q9FGQ7|CCD32_ARATH Cyclin-D3-2; TrEMBL-Plants: tr|I1MVT1|I1MVT1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0100700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13786056..13788470) extracted from Lotus japonicus Gifu genome v1.2.
GTGACGACGCTCTATTTTCCTACGCGCCAAACACCTTGTTCCTTATTTTTATGTGAGAAAAATTGTTGAAGAAAAAAAGA AAAAAAAAAGAAAGAAAAGGACAAGCATGAATGAAGTAGTGGGTACTGTGAGATAAAATACCCCTCTGTTTCATCACTGC ATTCCCCTCTCTCTCTCTCTCTCTCTCTCATAACCTCACTGTGAGAGTTGAAGAAAATGGCTCTGCTACAATGAACAACC GTTTCTTCCTCATCTTCTTCCTAGAAGATGGCTCTTAGAGAACAACAACAACAACAACAACAATCTCCCTCATTCCTCGA TGCCCTTCTCTGTGAAGAGCAACATACATTTGATGATGATGATGAAGAAAAAGCCACTCATGCTACTGAGTGTCACACCA TTAACGATGACCCACTCATCCTGTTCTGGGAGGAGGATGATGAGCTTGTCTCGTTAATCTCGAAGGAACGTGGAGAGACC CATTTGGGTTCTCTCGATCTTCATGATGGAGGGACTCGTGTTGAGGGTGTGGCTTGGATTTCTAAAGTCTCTGCGCATTT TGGCTTTTCTGCTTTGACTACTGTTCTTGCTGTGAGCTACTTTGATAGGTTCATTACTAGCCCCAGGTTTCAAAGGGACA AGCCATGGATGACGCAGCTTAGTGCTGTTGCGTGTTTGTCTCTGGCTGCTAAAGTGGAGGAGACCCATGTGCCTCTTTTG TTGGATCTTCAAGTATGATCTCTAGATGTTTGTTGAAATGACTGACTCAGATGTTTTTTGTTTTGTTTTGTTTCTGATGT TGTTGTTGGTGTTTGATTTTGATGAGGGTTTTGTGTTTTTTTTTGCTTTCTGATTAGGTGGAGGAATCAAGGTTCGTGTT TGAAGCAAAGACTATACAGAGAATGGAGCTTCTAGTTTTGTCAACTCTGAAATGGAGGATGCATCCTGTGACCCCAATTT CCTTCTTTGAACACATTATCAGAAGGCTTGGTTTAAAGACCCGCTTGCACTGGGAATTCTTGTGGCGCTGTGAGCGAGTT CTTCTCAATGTCATTCCAGGTATGGATTGTAATCTTCACCATAACTTTCTAGTCTTCTATTAATGCTAATAAATAGGACA CTAGATTTTCATATTAATGAGAATCAGAGTTATTATGCCATTAAGATTACTTCATTTACTTGTACTTATCATGGTAATAA TGCCATAATTATTGCCAGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTGCAATGATCCATGTTATT AAAGAGATTGAACCATTTAATGCAACTGAGTACATTGATCAGCTTATGGGTTTACTGAAGATAAGTGAGGTTTGTACATT TGACTTCACTGGTCTTGTCTCTACATTGCACATATTTCTTGAGCTTTCGTATCTGCTATTGATTTGATAAATGATTGGAA AAAATTTGTGGTGATCTTACAGGAACAAGTGAACCAGTGCTACAAGCTCATACTGAAGCTGTTAGTCTGCTATGAAGGCA TTTCCAATCTTCACCCGAAGCGCAAGCGATCTGAACCGAGTAGCCCGGGGGGTGTTATTGATGCATCTTTCAGCTGTGAC AGCTCAAATGATTCATGGGCCACAACATCAGCTGTCTCGACTTCACTGGAGCCACTGTTTAAGAGGAGCAGAGCTCAGGA CCAGCAGATGCGGTTGCCTTCTGTGAACCGCGTGTCCATTGATGTTCTTAATAGCCCTCGCTAATAATGGTCTTAGTACT TACTTCATATGCGGTAGCCCTCTTTCGCATGAATCTGTCCGTTAATGCGATGTGAAAACATTATGTTTTAAGTTATATAG ATTACTAGCCAAACATTTGAAGATTAATGAATGAGGCAGAATGTCAGAAACTGAGACTCCACCCTCCACTTTGTGGTTTG AGGTGGATCAGGTATCTGATACTGAGTAGAATGATGAGTTATGAACTTGTAATTCTACCTGTGAGTTTTCTTCCCAGTGC AATTTTAGTCGTCTTACATATATGATATTCTTCAATGAGCACAATCAAGAGGTTCCTTTTGCTTATCATCTGCCAATCTC TCCCCTTTTTGTGCAGAATAGGAACTGCATATCGAGATTGCTAATTGATAATCAAAGATTAATGCCTTCAGTGATACATT AGATAAATTAATAGAGCTTCTGTACTAGCAAGCCAAACCCAATGAGAAATAATATGTTGGCCCTCTAGGCCTAAGAGATA GTCATGGTTTCTATTGTCAATGCATCTCTCTGTTGCTTTCCTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTCAGCTCTGT TGCTTTCATTAAATCATCTACCTTGTGGAGTGGGGCATAATGCAGTCTCACCAAGCTCACCAAGAGATGATTCCCTCTTT TGATTAACATCCCAT
CDS sequence (LotjaGi4g1v0100700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTAGAGAACAACAACAACAACAACAACAATCTCCCTCATTCCTCGATGCCCTTCTCTGTGAAGAGCAACATAC ATTTGATGATGATGATGAAGAAAAAGCCACTCATGCTACTGAGTGTCACACCATTAACGATGACCCACTCATCCTGTTCT GGGAGGAGGATGATGAGCTTGTCTCGTTAATCTCGAAGGAACGTGGAGAGACCCATTTGGGTTCTCTCGATCTTCATGAT GGAGGGACTCGTGTTGAGGGTGTGGCTTGGATTTCTAAAGTCTCTGCGCATTTTGGCTTTTCTGCTTTGACTACTGTTCT TGCTGTGAGCTACTTTGATAGGTTCATTACTAGCCCCAGGTTTCAAAGGGACAAGCCATGGATGACGCAGCTTAGTGCTG TTGCGTGTTTGTCTCTGGCTGCTAAAGTGGAGGAGACCCATGTGCCTCTTTTGTTGGATCTTCAAGTGGAGGAATCAAGG TTCGTGTTTGAAGCAAAGACTATACAGAGAATGGAGCTTCTAGTTTTGTCAACTCTGAAATGGAGGATGCATCCTGTGAC CCCAATTTCCTTCTTTGAACACATTATCAGAAGGCTTGGTTTAAAGACCCGCTTGCACTGGGAATTCTTGTGGCGCTGTG AGCGAGTTCTTCTCAATGTCATTCCAGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTGCAATGATC CATGTTATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTGATCAGCTTATGGGTTTACTGAAGATAAGTGAGGA ACAAGTGAACCAGTGCTACAAGCTCATACTGAAGCTGTTAGTCTGCTATGAAGGCATTTCCAATCTTCACCCGAAGCGCA AGCGATCTGAACCGAGTAGCCCGGGGGGTGTTATTGATGCATCTTTCAGCTGTGACAGCTCAAATGATTCATGGGCCACA ACATCAGCTGTCTCGACTTCACTGGAGCCACTGTTTAAGAGGAGCAGAGCTCAGGACCAGCAGATGCGGTTGCCTTCTGT GAACCGCGTGTCCATTGATGTTCTTAATAGCCCTCGCTAA
Protein sequence (LotjaGi4g1v0100700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALREQQQQQQQSPSFLDALLCEEQHTFDDDDEEKATHATECHTINDDPLILFWEEDDELVSLISKERGETHLGSLDLHD GGTRVEGVAWISKVSAHFGFSALTTVLAVSYFDRFITSPRFQRDKPWMTQLSAVACLSLAAKVEETHVPLLLDLQVEESR FVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIIRRLGLKTRLHWEFLWRCERVLLNVIPDSRVMSYLPSTLAAAAMI HVIKEIEPFNATEYIDQLMGLLKISEEQVNQCYKLILKLLVCYEGISNLHPKRKRSEPSSPGGVIDASFSCDSSNDSWAT TSAVSTSLEPLFKRSRAQDQQMRLPSVNRVSIDVLNSPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 305 | 290 | 3.1E-105 | ||
| PANTHER | 16 | 305 | 290 | 3.1E-105 | – | |
| SUPERFAMILY | 47 | 184 | 138 | 4.08E-30 | ||
| Pfam | 82 | 183 | 102 | 2.2E-24 | ||
| Gene3D | 83 | 184 | 102 | 7.7E-47 | – | |
| CDD | 83 | 176 | 94 | 4.59297E-14 | ||
| SMART | 89 | 177 | 89 | 1.9E-13 | ||
| Gene3D | 185 | 275 | 91 | 7.7E-47 | – | |
| Pfam | 186 | 294 | 109 | 2.2E-18 | ||
| SMART | 186 | 312 | 127 | 4.4E-10 | ||
| SUPERFAMILY | 187 | 290 | 104 | 3.89E-9 | ||
| SMART | 194 | 278 | 85 | 7.4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0100700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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