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LotjaGi4g1v0103100.2

Overview

Field	Value
Gene ID	LotjaGi4g1v0103100
Transcript ID	LotjaGi4g1v0103100.2
Related isoforms 2	LotjaGi4g1v0103100.1 LotjaGi4g1v0103100.3
Lotus japonicus genome version	Gifu v1.2
Description	Caffeoyl CoA O-methyltransferase; TAIR: AT4G34050.3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|O49499\|CAMT4_ARATH Caffeoyl-CoA O-methyltransferase 1; TrEMBL-Plants: tr\|T2DPE8\|T2DPE8_PHAVU Caffeoyl CoA O-methyltransferase; Found in the gene: LotjaGi4g1v0103100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:14299042..14300355) extracted from Lotus japonicus Gifu genome v1.2.

GAGGAACAACAGCAAAATCAACTCATCGGCCACCAAGATCTAGCTCATAAGAGTCTCCTTCAGAGTGATGCACTCTATCA GGTTCCCTGCAACAACTAGCTAATTTCAATTTTTCTCTTTTTCACCAAGTATACTCAATAGATGTATGTATATGCTAATA GCAATTTATCTCTTCTGAGCAATTGTAGTATATACTTGAAACCAGTGTGTTTCCCAGAGAGCATGAAAGCTTGAAGGAGC TTCGTGAGATGACAGAAAAACACCCTCGGTATGATTGATCATGGTTATTAATTCTATTTCATCAGCAGATTCATCTATTG TTTTTTTTATTGACAAAAAAACAAACTTTCAAGTACACCAGATAGACCAAGCCAATTTTATGTGCAAGTGGACATTTCAT ACATGATACATGTGTCACTGTCTTGTACAAACTATGTGTCAAACACACAAGACTTTCAGGTCTACCACAAATATGTGCTA TTTATTAAAGATAATTAATGAAGATATTGTGAAACAGGAACCTGATGGCTACACCACCTGATGAAGGACAACTATTGAGG ATGTTGATTAAACTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGTTACTCTCTGCTTTCCACTGCTCT TGCTCTTCCTGAAGATGGAAAGGTACTTATTGAGCCTAATTAGCACATCTAAATCTAATTAATTAAACTTTAAATTTAAC ATATCAATCATATATAAAAGCCATGAATATACAATGTAATTAGCTTTTCTTTTTTTTTCATTTATTAGATCTTGGCTTTG GATGTGAACCGTGAATACTATGAATTGGGATTACCCATAATTGAGAAAGCTGGAGTTGCTCACAAGATTGATTTCAGAGA AGGACCAGCTCTTCCTCTTCTTGATGAACTGCTAGAGGATGTGGGTGTACCATATCTTAATTTTCATTTTCATCTATGCT TTACTAATTAATTTTCAATTTTCACATTGTATAACTAAACCATGTCAATTAATTTTGCAGGAAAATAATAAGGGAACATT TGATTTCATTTTTGTGGATGCTGATAAGGATAACTACATAAACTATCACAAGAGGGTGATTGAGCTTGTGAAGGTTGGGG GTCTAATTGGGTTCGATAACACCTTGTGGTTTGGGTCTATGGTGGCTGCACCAGACGCACCTATGATGGATTTTGTGAAG CACTATCGTGGTTATGTGATTGAGCTCAACAAATATTTAGCTCATGATTCAAGGATTGAGATTTGCCAGCTCCCCGTTGG TGATGGGATTACCCTGTGCCGCCGCATCATTTGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0103100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACCTGATGGCTACACCACCTGATGAAGGACAACTATTGAGGATGTTGATTAAACTCATCAATGCCAAGAACACCAT GGAAATTGGTGTCTACACTGGTTACTCTCTGCTTTCCACTGCTCTTGCTCTTCCTGAAGATGGAAAGATCTTGGCTTTGG ATGTGAACCGTGAATACTATGAATTGGGATTACCCATAATTGAGAAAGCTGGAGTTGCTCACAAGATTGATTTCAGAGAA GGACCAGCTCTTCCTCTTCTTGATGAACTGCTAGAGGATGAAAATAATAAGGGAACATTTGATTTCATTTTTGTGGATGC TGATAAGGATAACTACATAAACTATCACAAGAGGGTGATTGAGCTTGTGAAGGTTGGGGGTCTAATTGGGTTCGATAACA CCTTGTGGTTTGGGTCTATGGTGGCTGCACCAGACGCACCTATGATGGATTTTGTGAAGCACTATCGTGGTTATGTGATT GAGCTCAACAAATATTTAGCTCATGATTCAAGGATTGAGATTTGCCAGCTCCCCGTTGGTGATGGGATTACCCTGTGCCG CCGCATCATTTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0103100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNLMATPPDEGQLLRMLIKLINAKNTMEIGVYTGYSLLSTALALPEDGKILALDVNREYYELGLPIIEKAGVAHKIDFRE GPALPLLDELLEDENNKGTFDFIFVDADKDNYINYHKRVIELVKVGGLIGFDNTLWFGSMVAAPDAPMMDFVKHYRGYVI ELNKYLAHDSRIEICQLPVGDGITLCRRII

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	1	190	190	7.9E-66	–
ProSiteProfiles	PS51682 View details on PS51682 Search for proteins/transripts with this domain View external data on PS51682	1	189	189	67.467	IPR002935 Show description in modal box View details on IPR002935 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR10509 View details on PTHR10509 Search for proteins/transripts with this domain View external data on PTHR10509	2	190	189	5.3E-120	–
PANTHER	PTHR10509:SF63 View details on PTHR10509:SF63 Search for proteins/transripts with this domain View external data on PTHR10509:SF63	2	190	189	5.3E-120	–
Pfam	PF01596 View details on PF01596 Search for proteins/transripts with this domain View external data on PF01596	2	189	188	6.7E-87	IPR002935 Show description in modal box View details on IPR002935 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	3	188	186	9.65E-40	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd02440 View details on cd02440 Search for proteins/transripts with this domain View external data on cd02440	28	129	102	7.65261E-4	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008171 View details of GO:0008171 AmiGO InterPro QuickGO	Molecular function	O-methyltransferase activity	Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule.	Subterm of View details of GO:0008168

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0103100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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