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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0109800 |
| Transcript ID | LotjaGi4g1v0109800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein 101; TAIR: AT5G66930.2 meiotically up-regulated protein; Swiss-Prot: sp|F4K265|AT101_ARATH Autophagy-related protein 101; TrEMBL-Plants: tr|I3SEC2|I3SEC2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0109800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:15628671..15632279) extracted from Lotus japonicus Gifu genome v1.2.
AGAAATTTGGGCTTGAAATAGCCTTTTTTTTGTTACATTAGAAAGAAAAAAACCACCATCTCTTTCGTCTCAACTCCTCT ACTCTCTCTGATTCTAATTGCGAAGACTCGTGCCAGTAAAGTAATCTCAACTTGGCTTTCAGTTCCAAGCAAACTTGAAT CACCGTTCCCCTTCGTTCTCCGATCCACGCTGTTTCCTTCTCCTCTTCCGAAACAACCTAGGGTTCGTTCATTCGTTCCT CCCAATCATGAACTGTGAAGTTTGCCAGCTCAAGGAACTGGTAATTCCTCTTCTTCTCTTCTTCAAATTCTCTTGTTTTT CCCAATTTCTCATGATTAGGTTTTCCATTTCTCGCTGCAGGAAGTGGAGCACTTTGAGATACGCGAAATCCTGCGATGTA ATCACGCTAACTCGATTCTCTGCTCTTCTTTGGTGTGCTCAGTGTGCTTATTGTTGTTGTGTTTGGAAATTTCGTGTTGA ATTGTTACGTTTTTGCAGGCATATTGCACACGGTCGTGTTTCATCGCGCGTTGGGTCTCGTTCGTCCCAAAGATGTTGAC ATGGAACTATTTGATGTCACCTACGTATGTTTTGAATATCAATTTGTATTGTTATCATTGTAACAAATGCGTTATTGTTA TAGAAACGCTACTTAATTGTGTTTTTTCTTCATTAGTTTCTATATATGCTGTATATTTGTAGATTACATGCTTTTTAGTG TGAGTGAAACATTGGAAATTTTCGAGTTTTGTTTAATTGTGTTGTGTTTTTTTAATGTGAGGGCGTGTAGGTGCAATGCG GAGAGTTGGAGCTTGAGAAGAAAATAGAAGAGAAGATTGAGCAGTTCATTTGTTGGGTGGAGAAGCATCCTAACAAAAAG AGTCAGGTTAGTGCTTTGCTTGTGGATTACCATGTCCCATGTGTGAATGCTGCTGCTTGGGGGAAAAAGCTGTTGATTTT AGTTTCAAGGTTCTGTAGTGATGAGCTTTACTTGTTTGCATGCTCTATTTTTAGTCAGAATACATGATTTGCTTTTGCTA CTCCTAGTGGTTGCTGTGTGACTAGGAGCTCATAGTTTAAATCAGTCTCTAGAAAATGCAAGGTAGATAGTAGTACAATA GACCTTTGTGGATTTTTTTCATCCTTCGATTGGATCATGTCATAGCGGAGGCTTTACATTATCTTGTTGTCCTTTTAAAT GCAATCCTGTTTTCAAGTTTCGACTACTTGGGAACTTTCTTTTGTTGGTTTTATTTTGTGGTTCAAAGCAATTTTCTTTT GCTTACAATTTGTTTCAATATGTAATCCCTTTCTGCAAATTTTGGTAGGCTGGAAATGGTTATGTCCAGACAGGGTGCAT TAGTTAATCCCTTCTGAATTCAATGATGCAGATATGCTTATCATTCTATGAGGTGAAAAATAAGCAGGTATCTTGGTTCA GTAACAAAATTGAACGCTTGTATTGGGAACAGTGGTATATTAATCTGAATGTGGCCCAGCATCAGAAGGCACACTCTAGC AAGTCTCATCTTTCCAAAGTTGTTGATCCCGGAGGTGCAGTTGCTGGCTCTGTTTGCTAAACTAAATCTCGTTCATGTTT CACTCTTACTGTGCAGTTAGTTCCATCAGATCTTCTCTCTAATTTATTTTTTTCCATATTTCTTTGCTTGTTTTGCCATG TTTCTCATGAGTAGAGGGAGCACTGGAAGATAGAAATGCTCGAAGTGCAACACTTGAAGCATCGCTGCGTGAGGTTTTAT TTCAAATAATAAAATTTGTGAACGAGAAGAAGGACCATGTTCCGCCAATACCAAATCTTGAGGGCGCTATTTCATTTCCC TATGAAATTACAATACCTAGGTGTGCTGTTTTTTTACTCTGTTTGACCGTATCCATTGTGATTATGCTTCTCATGTGCTT TCTGAATTGATATCTTTGATCACAATACCTATTAAATTTGATATCTTTGATTCTGAATGAGTGTTCTTGGCTGATTGTGT TGATGATGTGATGTCTTTGAAGTTTTTACCCTGTTAGAAATAATAATATAAAACCATTCATATGACCCCTACCCAATAGC TTAAGCATTTGGGTCTTGGGATAATTGGTTGCTTGACATGGTATCAGAGCCATCATTCATATGGCCCTTACCCAATAGCT TAAGCTTTTGGGATAATTGGTTGCTTGACATACCCCATAATGGTTTTTAGAAAATCTTTGGAGCTTTTGGAGTCACTTGA GGATAGTATCATACCAAAAGCTTTAAGTTTAGGTGTCTTGGATCCATCTCAGGAGAGATCAAACTTCATGTTCAATTTTC CCTCTCACCGCACAGATCCCTTCTTCAACGACCATCCTTCACAAGCAACCACCCTTCTGTGCTTGAAGATGATAATGAAT GATTTCTTATGTAGCTAGGAGCCTAGGAACTCTTATTTCAATGTTCATGTTCATGTTTTATTACTTTTAAGCCTTAGAGG CTTGGACTTGTTTTTAGTTTTTACCTTTGCTTTTGAGTGGTTTTTGGTTAGTAATTCGAAACAATTTTTTTGAGAATATC TGTATTGGATGAAGATTTGTGCCCCTGAGATCTTGCTTGATGAGTGTAGTTTATTGTACTTTTCATATAATTTATTTTGC TGAATCGACCAAGTTAACATCTATCATTGACCAGTTCGTCGGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTC CAGACTGGGCATCCAACAATGCTAAGTTGATTGTTAGAGTCAGTAGAGTGGTGGTGTTTGAAGTTAAATGGAGATTCTTG TTCATATGTATAAGCTTGAAATCTGGTGCTGAAGAAAGCTGGTAAGGAAGGCAATGTTCAACCTCTTTGTAAATAAAGCT GAATCTATAGTATAGTTGCAATCCAAAAAAAAAAATCTTTTGCAAATATTTCCTCTTTTTAATCTGTCTTTCATATCTTG TATTTCTTCTATCCATCTTCTCTCTTAAGCTTGCACTTTGGTCAAGCACTTCATAAGAGACGCAGGTAAGTATATAAGTA GTTTATGATTTGAAGTAGCTTCCATTTTTTTGTGTGTCAACAAGTAGCTTCCATTTTAACTGAGGTGATTATCTATCTGC AGCAAGATTTAGCCGACCTTAGCTTCGGGTGGCTAATGATTTGATGAATTTTGGACTAGATCATAAGTAAGAGGTGGTTT AAAATATGGATCAAACATTGTTCCCAAATAGAAAACGATTGAGCGGCGAAACAAATTCTTCATGACCCCACGCGTTTCTC CATCATTTTTGCGACCATTTAGATCAATTTTAACTTGATCTTGAATCCTTTGATGATTGGGGATTAAAAGGGAGATTTTA TACCCAAAACCATATTTCAAAATGGAGAAAACTAGCACCCCAAAATTGAAAAAAATAGTCCCGTAACACAAGTTTAGGCT CTTCAGGAATCATGATTAACTTCTATTTTATTATTTCAAGAAATGTGAAATATCTTGAAGACATGGTGTTTATTCCTTGC TTAGAATACATAAGATGTCTTCTTGTTTTGTCAAACTTAAGATGTCTTTTTGTTTTTGGACAACTTGAGATGTCTTTTTT TTTTTGGTC
CDS sequence (LotjaGi4g1v0109800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTGTGAAGTTTGCCAGCTCAAGGAACTGGAAGTGGAGCACTTTGAGATACGCGAAATCCTGCGATGCATATTGCA CACGGTCGTGTTTCATCGCGCGTTGGGTCTCGTTCGTCCCAAAGATGTTGACATGGAACTATTTGATGTCACCTACGTGC AATGCGGAGAGTTGGAGCTTGAGAAGAAAATAGAAGAGAAGATTGAGCAGTTCATTTGTTGGGTGGAGAAGCATCCTAAC AAAAAGAGTCAGATATGCTTATCATTCTATGAGGTGAAAAATAAGCAGGTATCTTGGTTCAGTAACAAAATTGAACGCTT GTATTGGGAACAGTGGTATATTAATCTGAATGTGGCCCAGCATCAGAAGGCACACTCTAGCAAGTCTCATCTTTCCAAAG TTGTTGATCCCGGAGAGGGAGCACTGGAAGATAGAAATGCTCGAAGTGCAACACTTGAAGCATCGCTGCGTGAGGTTTTA TTTCAAATAATAAAATTTGTGAACGAGAAGAAGGACCATGTTCCGCCAATACCAAATCTTGAGGGCGCTATTTCATTTCC CTATGAAATTACAATACCTAGTTCGTCGGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTCCAGACTGGGCATC CAACAATGCTAAGTTGA
Protein sequence (LotjaGi4g1v0109800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNCEVCQLKELEVEHFEIREILRCILHTVVFHRALGLVRPKDVDMELFDVTYVQCGELELEKKIEEKIEQFICWVEKHPN KKSQICLSFYEVKNKQVSWFSNKIERLYWEQWYINLNVAQHQKAHSSKSHLSKVVDPGEGALEDRNARSATLEASLREVL FQIIKFVNEKKDHVPPIPNLEGAISFPYEITIPSSSDSAFGMDMIKRMLQTGHPTMLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 218 | 218 | 1.1E-110 | – | |
| PANTHER | 1 | 218 | 218 | 1.1E-110 | ||
| Pfam | 10 | 179 | 170 | 1.2E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Autophagy | The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. |
Expression pattern of LotjaGi4g1v0109800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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