Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0109800 |
| Transcript ID | LotjaGi4g1v0109800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein 101; TAIR: AT5G66930.2 meiotically up-regulated protein; Swiss-Prot: sp|F4K265|AT101_ARATH Autophagy-related protein 101; TrEMBL-Plants: tr|I3SEC2|I3SEC2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0109800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:15628918..15631420) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACTGTGAAGTTTGCCAGCTCAAGGAACTGGTAATTCCTCTTCTTCTCTTCTTCAAATTCTCTTGTTTTTCCCAATT TCTCATGATTAGGTTTTCCATTTCTCGCTGCAGGAAGTGGAGCACTTTGAGATACGCGAAATCCTGCGATGTAATCACGC TAACTCGATTCTCTGCTCTTCTTTGGTGTGCTCAGTGTGCTTATTGTTGTTGTGTTTGGAAATTTCGTGTTGAATTGTTA CGTTTTTGCAGGCATATTGCACACGGTCGTGTTTCATCGCGCGTTGGGTCTCGTTCGTCCCAAAGATGTTGACATGGAAC TATTTGATGTCACCTACGTATGTTTTGAATATCAATTTGTATTGTTATCATTGTAACAAATGCGTTATTGTTATAGAAAC GCTACTTAATTGTGTTTTTTCTTCATTAGTTTCTATATATGCTGTATATTTGTAGATTACATGCTTTTTAGTGTGAGTGA AACATTGGAAATTTTCGAGTTTTGTTTAATTGTGTTGTGTTTTTTTAATGTGAGGGCGTGTAGGTGCAATGCGGAGAGTT GGAGCTTGAGAAGAAAATAGAAGAGAAGATTGAGCAGTTCATTTGTTGGGTGGAGAAGCATCCTAACAAAAAGAGTCAGG TTAGTGCTTTGCTTGTGGATTACCATGTCCCATGTGTGAATGCTGCTGCTTGGGGGAAAAAGCTGTTGATTTTAGTTTCA AGGTTCTGTAGTGATGAGCTTTACTTGTTTGCATGCTCTATTTTTAGTCAGAATACATGATTTGCTTTTGCTACTCCTAG TGGTTGCTGTGTGACTAGGAGCTCATAGTTTAAATCAGTCTCTAGAAAATGCAAGGTAGATAGTAGTACAATAGACCTTT GTGGATTTTTTTCATCCTTCGATTGGATCATGTCATAGCGGAGGCTTTACATTATCTTGTTGTCCTTTTAAATGCAATCC TGTTTTCAAGTTTCGACTACTTGGGAACTTTCTTTTGTTGGTTTTATTTTGTGGTTCAAAGCAATTTTCTTTTGCTTACA ATTTGTTTCAATATGTAATCCCTTTCTGCAAATTTTGGTAGGCTGGAAATGGTTATGTCCAGACAGGGTGCATTAGTTAA TCCCTTCTGAATTCAATGATGCAGATATGCTTATCATTCTATGAGGTGAAAAATAAGCAGGTATCTTGGTTCAGTAACAA AATTGAACGCTTGTATTGGGAACAGTGGTATATTAATCTGAATGTGGCCCAGCATCAGAAGGCACACTCTAGCAAGTCTC ATCTTTCCAAAGTTGTTGATCCCGGAGGTGCAGTTGCTGGCTCTGTTTGCTAAACTAAATCTCGTTCATGTTTCACTCTT ACTGTGCAGTTAGTTCCATCAGATCTTCTCTCTAATTTATTTTTTTCCATATTTCTTTGCTTGTTTTGCCATGTTTCTCA TGAGTAGAGGGAGCACTGGAAGATAGAAATGCTCGAAGTGCAACACTTGAAGCATCGCTGCGTGAGGTTTTATTTCAAAT AATAAAATTTGTGAACGAGAAGAAGGACCATGTTCCGCCAATACCAAATCTTGAGGGCGCTATTTCATTTCCCTATGAAA TTACAATACCTAGGTGTGCTGTTTTTTTACTCTGTTTGACCGTATCCATTGTGATTATGCTTCTCATGTGCTTTCTGAAT TGATATCTTTGATCACAATACCTATTAAATTTGATATCTTTGATTCTGAATGAGTGTTCTTGGCTGATTGTGTTGATGAT GTGATGTCTTTGAAGTTTTTACCCTGTTAGAAATAATAATATAAAACCATTCATATGACCCCTACCCAATAGCTTAAGCA TTTGGGTCTTGGGATAATTGGTTGCTTGACATGGTATCAGAGCCATCATTCATATGGCCCTTACCCAATAGCTTAAGCTT TTGGGATAATTGGTTGCTTGACATACCCCATAATGGTTTTTAGAAAATCTTTGGAGCTTTTGGAGTCACTTGAGGATAGT ATCATACCAAAAGCTTTAAGTTTAGGTGTCTTGGATCCATCTCAGGAGAGATCAAACTTCATGTTCAATTTTCCCTCTCA CCGCACAGATCCCTTCTTCAACGACCATCCTTCACAAGCAACCACCCTTCTGTGCTTGAAGATGATAATGAATGATTTCT TATGTAGCTAGGAGCCTAGGAACTCTTATTTCAATGTTCATGTTCATGTTTTATTACTTTTAAGCCTTAGAGGCTTGGAC TTGTTTTTAGTTTTTACCTTTGCTTTTGAGTGGTTTTTGGTTAGTAATTCGAAACAATTTTTTTGAGAATATCTGTATTG GATGAAGATTTGTGCCCCTGAGATCTTGCTTGATGAGTGTAGTTTATTGTACTTTTCATATAATTTATTTTGCTGAATCG ACCAAGTTAACATCTATCATTGACCAGTTCGTCGGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTCCAGACTG GGCATCCAACAATGCTAAGTTGA
CDS sequence (LotjaGi4g1v0109800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTGTGAAGTTTGCCAGCTCAAGGAACTGGAAGTGGAGCACTTTGAGATACGCGAAATCCTGCGATGCATATTGCA CACGGTCGTGTTTCATCGCGCGTTGGGTCTCGTTCGTCCCAAAGATGTTGACATGGAACTATTTGATGTCACCTACGTGC AATGCGGAGAGTTGGAGCTTGAGAAGAAAATAGAAGAGAAGATTGAGCAGTTCATTTGTTGGGTGGAGAAGCATCCTAAC AAAAAGAGTCAGATATGCTTATCATTCTATGAGGTGAAAAATAAGCAGGTATCTTGGTTCAGTAACAAAATTGAACGCTT GTATTGGGAACAGTGGTATATTAATCTGAATGTGGCCCAGCATCAGAAGGCACACTCTAGCAAGTCTCATCTTTCCAAAG TTGTTGATCCCGGAGTTAAGGGAGCACTGGAAGATAGAAATGCTCGAAGTGCAACACTTGAAGCATCGCTGCGTGAGGTT TTATTTCAAATAATAAAATTTGTGAACGAGAAGAAGGACCATGTTCCGCCAATACCAAATCTTGAGGGCGCTATTTCATT TCCCTATGAAATTACAATACCTAGTTCGTCGGATTCTGCATTTGGGATGGACATGATCAAGAGAATGCTCCAGACTGGGC ATCCAACAATGCTAAGTTGA
Protein sequence (LotjaGi4g1v0109800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNCEVCQLKELEVEHFEIREILRCILHTVVFHRALGLVRPKDVDMELFDVTYVQCGELELEKKIEEKIEQFICWVEKHPN KKSQICLSFYEVKNKQVSWFSNKIERLYWEQWYINLNVAQHQKAHSSKSHLSKVVDPGVKGALEDRNARSATLEASLREV LFQIIKFVNEKKDHVPPIPNLEGAISFPYEITIPSSSDSAFGMDMIKRMLQTGHPTMLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 219 | 219 | 2.3E-108 | – | |
| PANTHER | 1 | 219 | 219 | 2.3E-108 | ||
| Pfam | 10 | 180 | 171 | 1.6E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Autophagy | The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. |
Expression pattern of LotjaGi4g1v0109800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…