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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0116300 |
| Transcript ID | LotjaGi4g1v0116300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U1 small nuclear ribonucleoprotein 70 kDa protein, putative; TAIR: AT3G50670.2 U1 small nuclear ribonucleoprotein-70K; Swiss-Prot: sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa; TrEMBL-Plants: tr|A0A0S3T4H1|A0A0S3T4H1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0116300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16838446..16844827) extracted from Lotus japonicus Gifu genome v1.2.
TTAGTTAAAATTTGTTTATAAGTAACTTTGTTAAGAAAAACACTCCTAATCATATTATTATTATCCATAATCCTTTTTCA TCTCTTCAAACCTCCAAAACGTTTTCATCGGTGCTTGAAAATCGCGTTTCACTATAAATATCCCTGCCATTCTCCCTCTA GGGTCGAGAACCCGCATGCGATTCAGTTCGGATCTATCGAAACCGCTTCACCATGGACAACGATCCTCTCTTGCGCAACC AGAACGCCGCCGTGCAGGCCCGTGCCAAGGCTCAGAACCGCGCCAACGTCCTCCAGCTCAAGCTGGTTCGTTCCTCTCGC TTCTTCCTCTTCCATTCGAACTCCGATTTCTCATTTGCCCTAATTTGAACTAGATTTTGTTTATCTTAACCGAAGTTAGG GTTTATCAATAGTTTCGATTCGTAACCCTAGATTGTAGATTTGGTGCAAATTCATGTTTATGTGATGTGTTTGTTGCAGA TTGGACAGAGTCATCCTACTGGTCTCACTGCGAATCTGTTGAAGCTCTTTGAGCCGAGGCCTCCATTGGAGTATAAGCCT CCTCCGGAGAAACGAAAATGTCCTCCCCTATCAGGTGTTTGTTTGATGAGTGTTTATGTTTCGGTTTCGCGCTGATTTTT ATGCAATTTATTGTTGATTGTTTATGATTATCGATTCGAATGTGAATACGATATGTTTGTTTTGTTTTTTTGAAGGGATG GCGCAATTCGTGGGTAAATTTGCTGAGCCCGGTGATGCTGAATATTCGCCTCCTATACCAGTGGCTGAAACTCCTGTAAT GTTCAGTTCCTTTGTGAATAATTTCATGGGGATTATTATTGTTATTATGATTGTGACTTTGTTGTGCATATGTTCATAAT TTTATGTGATTGTTGCGTCTGGCGTGTCTGTGGAGTGGAGGTTTGGTTAGATCTTAGATGCAATAGTTGAGTCGACTTCT CCCATTTGCATGTCCTGATTTAGTTCTTCGAGTTATCCGTGTCTGTAACTATTAAATTGTAAGTAATATTGGTGCTGAAC AATGTATGCATGTGGTGTGGTGAACAAAAAAATTCTTCTATTATATAGACGTAGATAACATCTAAACTTTTTTTATAGAT ACATTTGTTTCGTTTGTCATGTTTGTTTCGTTTGTCATGGTGTTAATAAGTTTTTATCTTTGATTATGATTGCTGAACTC TAGTCATGTTTTGTCTGGGGTAAGACTTTGCAAACTAAATGTTCAATTAATAGTCCTTGACTGCTTGGGCTTTCATGTGG ACATGTGGTACTAATCTTTTTTTTTTGACAGCACATGTGGTACTAATCTGCTCTAAGAGAATGTTTGTCTTAATATTCCA TGGTTCATGAATAGCAATTAGGTAGCTTGAATTCTGCTAAATATTAATCAGAAGATATAATTACTATTTTCTTTTCAGTC TTTACCAGGTTTCATTTTGTTTTCGAATTTATTTGAAAGTGTGGTTATTAATTTATTATAATGTTTAGTAGACAGACATA ACTCTGCTACTTATTGAAATTCTGTTCCTTTTCATAGAGCTAATATATAGTTAATGACAGTTGTGAAATAGTTTAAAAGT GTCACATCGGTTAATGCATATTTTGTTACATTTTGGTGAACTCAGGCACAGAGGAGAGAAAGAGTCCACAAGTTAAGACT TGAGAAGGGAGCAGCAAAGGCTGCCGAGGAGCTTGAGAAATGTGATGACTCATTTATTGTTGTGTAACTCTTAGTTCATA TTCGTGGATTTATTTTCTTAACTAAATGTTTTAATATCTGGTCCAATGCAGATGATCCACAAAATGACCCGAATGTATCA GGAGATCCATACAAGACATTGTTTGTGGCCAAACTTGTGAGTTATATATTCCTATTTATTAACTCTAGCACTTTTGATTG CTTGTCCGTATCTCATTGATGCTGTGTTCTGACAGAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCA TATGGTCCAATCAAACGGGTAGGTATTTTGAATATACCCCAAAAGGGTTCGGTAAGCGTATCTTATATGTTTCTTCTATT TGACATCTTTACATACAAGTTAACCTCCAAAATGGATTTTCATATTTAACAGTTTCCATGTGTACACAAATCTTGAAAAA CAAAAGATTGGCTTATTTTAAGATAATATATGCTTTAACCATTTTATTTTTCTGCTGAAAAAATTTTCTTGTAATTTTAG CAGTTTTCTTAACTAACTAGCCTGTTGTAAAGTCAATCAGTTATGCATAATCCGATCATTCCAAACATTCAACAGTATAG GTATAGATTATAAATCTTACTAATTTAACTTGTCATTATTGAGTGGCTTTGAAATGGTTCAACTGCATTTAGTTGCGCCA TCAATTTTTATTTATTGGTTTCTTTAGGGAATTCCCACTTAGATCCATTCCACACTTAATATATGTGGATAGGAGATCTT AGGGCTCTGGGTCTCTAGGAATTATTTTAGCTGCAAGTTCTGCATCTCATTACACATCCCTGGTAATGGTTGATCATCTG TTCTGCAAATGGTAAATGATTATCAAATTTCAATCAAACCCGACTTCCATTCAAGCGCTTCCTCTGTACGGTATTTTAGT TGGGCAGAGCTATGATGCAAAATTGTGCATTTGGCCTTGTTTTCAAGCAAGAAAAGGGGACTGACCACTTCTGTTCTTTT CCTGCGCTGGGTAAAATATGTTGGGAGTATTGCAATCTCTTCCTCTTTTGTTTAAATTCGTAGTTAGCATACTTTTGATG TTGCTAAAACTTTATTTTTGGCTTTAAAGGCTATCAAAACCAAATCAGCCATTGAGAAGATGTTATGGTATTTTCTATAT TACCCACAGTTGTTTTCATTTTATCAATTTAAAAATAATATCCCTGGTAAGGGGACGCTAGTCAACAACTGATAATTGGG CCCAAATACCTCCGTTTTTCTGCAACTAATGCTGGTGGTGATGCATCTCGCGATGGGAGCTGTGTGATTTAAAGGTGAGC ACGGCTAATTAGGCATAGTGCCTGTCTGCCGTGCCATTTAGGATTAGTGTTAGTATTTAATTTTGGTTGTACTTACAATG ATTCTGAGGTCAGATTGTGAGTGCATTTTTTGTTAATTTCTTTTGAGCTATAGACCAGAATGTTTTCTTCTGACTATTTA TCCTTTTTCAAATTTCTTATGATTTAGGTTCGGTTGGTTACTGATAGTGAGTCAAATAAGCCCAGAGGTTACGCATTCAT TGAATACCTGCACACAAGAGACATGAAAGGTTGGTAGTGGTTTAGTGTGAATTGTCTGATTATAATATATGTATATGACT GACTTTTTTGTCACACTTTTCATTTATTATGCAGCTGCTTATAAACAAGCTGATGGGAGGAAAATTGATGGTAGAAGGGT GCTCGTGGATGTTGAACGCGGGAGGACTGTTCCAAATTGGCGACCTCGTCGTCTTGGTGGTGGGCTTGGTACAACTAGAG TGGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGTAAATGGTCTATAACTTCAATTTTGTGATAGCATAGCACTTC ATTCATTACTTATTTCAAACCCCATAGTCTTTTATAGATTGCCTGAAATAGAATTACAACTAGAAGTGAACACTAAGAAC ATTGTTAATTATTATGACATTATTTCTTTTTACATTTATGTGTCATGTTTGCTTGAGAATTTGAAATATTTGCAACAAGA AACCACCTGGTGTTCTATGATTCTTCTCTAGTACGGAATTTTGTGAACCTTTCTCAATTTCCTTGCATCTATGAGTTGGA TCTTTGGCAAAAGGTTATGCTTATGTGTTGGAGCTAGCTGACAAATAGAACATCGGATGAAAATAATTTCTTGAGCACAC TGATTGTTGTGACTTCTGTGCACCTTAAATTGCAAATTGTCATACTTTGTCTTCTTTACTGTTGTCTATATAAATTTTGT TGGATGCTTCCTTTGTTCTTACTATGGAGGAGCATTCTGACTTGAGTTAATTTATTCAGGGAGCAGCAGCAATCTGCACC TTCTCGTTCTGAAGAACCCAGAGTGCGGGAGGATCGAAATGTCGATCGGTAAGAATTCCAATGTGTTTCTTCAATTTTGA GTAGTTAATTGGTGTTGGTACTCACAAATAACTGATCATACAACAATTACTTGATAGCAGGGTGCTTTGGTTTCCCTGCA TTAATAGGATTCAAATTAAGTTCTGTTATTCAAAATTATTTTTAGTCATTTACTGACTGCTATTGACTGTGTTCATTTTA GGGACAGAGAAAAGTCACGTGAAAGAGTTAAGGACAAAGATGGAGAACGTGAGCGATCACGTGAACGGTCCAGTGATAGA GCCAGGGATCGTGATCACAGAGAGGATAGGCACCACAGAGACCGGGATAGGACTAGGGACAGAGATAGGGACAGAGAAAG AGAGAGAGACCGTGGACGTGACCGAGATAGAGGACGTGACCGCGATCGTGGTCGAGAGCGGGAACGTGATCGTGATAGAG GAAGGGATCGTGATCGGGACCGAGAACATGATCGTCATCGTGAAAGGGATAGGGATTATGAAGCTGGGGAAACTGATAGG GGACGCTCACATGATAGGGAGGTTGATTATGATCATGTTGAACCTAAACAAGAGAAGGATCGCCGTGGTGAAAGAGAGCG TGACTTTGAACCTGAGGATGATCGTGAGTACTACAACCAACCGGTGCATGGACGTAGGCATGCAGATCCTGACCATGATC CTGATCACTATGGACACTATGGGCATCACCGTGGTCGGGGGCAGTATGATGATGGAGATGAGCACGGTGACCATTACAAT CAATATCATGATCAGGATAGGATGGAAGATGACTATGGCACTGAACGAGCAAAATCTGAATCACGTGAAAAGGAGAGAAG TCGTGATGTGGACCGTGAAAATCGTCGCCCAGAGAGGTCCCATTCCCGGGAGTTCGATTACTGATTTCTATGAACTTGAG CACAATATTTCTCAAATTCACTGGTAAGATTCATGGCATACATTTTAGTATTCTATTTGGTTATTGTTGATTCTTGCCAA TCAGGCTGTAAGTTCTGGATTGCTTCTTTGTAGCTGTTAATGGATCAGGGCATGAAGAGATCAAAACACTGTCCAAAAAG AAATTACATGTTGTGGCGGCCATCCATATTTGATGTTGAAAGGTTACCGCACCAGCTTTGGTGTTCTGTTTCTTGATATG GACGTGGACTACTAATATTTGTCTTTGATGGTTTTGTTTTCCTGAGACATTATATTTTATTTTTCTAGTTTTTGTGGGCA CAATTTCTGGGATTCAAGTTATCGTTGGTCTATTGATATGCTTGGAACTGTATTCATTTATATCAAGTATTTCTTACATT ATAATGTTAGCTGATAGACCCTTGGTTTATTAGAGGTTGAGTAGTGTCGGTGTTTTCTGGTTATTAATTTTTACTTGCCT TAGCCTCTTAGAAAGCAAAATAATTGATGAAAATATCACTTAACTTTCCAGATTTTGCCTCACTACTCCTGCCTGTGTCA AACTCAAATTTTGGGTTGCCTTGCGATTGAGTTCTATCTCACATTTGTTCTGAGATAGTGTAATCATTGCCTGTGTAAGT ATGAAGTATTTTCAATCTAAAATAGGGTTGAGTCCTTAAGAATCGTGCTCTTGCTGGAGGTGCTGCAAAGTAAAATAATG TTGCTAGAGTTCTATCACGTTTGGTTTACTGATGGTGCCATGTGAATGTTTGTGCAACTGTGCGGTAATGTTAAGCTTTG CAAATTATCTGCCAGAGAATTTTGTTGGATTATAGGCATGATTTTCAACGATTTTGTTTTCTATTTTCCTTTTGCTACAA GTTCATTTCCATCATTTTGGGTGAGGTGTGCTATGTGGGAGAATTACAAGCCAATTTCAGCATGGCTATTGGCAGGTTTG CTTGCAAAGAGGTTTCTACAATTTTCAATCTTAGGATAGTTTCTCTTGCTGTTTTTTTTTCTTGCAACAAAAATAATATT TTCAAGGTTTCTTAAGTTATGAACATATGTACTATTGGGAGCTTTATTAATTAAGAAAGCAACTGCTACGGTAAATTGAC TAATTCTTTCATTGGCAGCGTGATCGGATGCAAAAACTATGAAAACTAAAGAAAAAGCCATAACAAAAATTTTGGGACCC AAGAGCGAGCTCAATTTTTAATTTTGTTAGTGATGGGCAATTCAACCATTCAAGTGATTAAACGTTGAAGAAGCCAGAAA CAAATGAAGTTACCATGAAGCTTCGTAGCTTTGCTATGTGCTATGATGCCGGTTTAGCAAGG
CDS sequence (LotjaGi4g1v0116300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACGATCCTCTCTTGCGCAACCAGAACGCCGCCGTGCAGGCCCGTGCCAAGGCTCAGAACCGCGCCAACGTCCT CCAGCTCAAGCTGATTGGACAGAGTCATCCTACTGGTCTCACTGCGAATCTGTTGAAGCTCTTTGAGCCGAGGCCTCCAT TGGAGTATAAGCCTCCTCCGGAGAAACGAAAATGTCCTCCCCTATCAGGGATGGCGCAATTCGTGGGTAAATTTGCTGAG CCCGGTGATGCTGAATATTCGCCTCCTATACCAGTGGCTGAAACTCCTGCACAGAGGAGAGAAAGAGTCCACAAGTTAAG ACTTGAGAAGGGAGCAGCAAAGGCTGCCGAGGAGCTTGAGAAATATGATCCACAAAATGACCCGAATGTATCAGGAGATC CATACAAGACATTGTTTGTGGCCAAACTTAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGT CCAATCAAACGGGTAGGTATTTTGAATATACCCCAAAAGGGTTCGGTAAGCGTATCTTATATGTTTCTTCTATTTGACAT CTTTACATACAAGTTAACCTCCAAAATGGATTTTCATATTTAA
Protein sequence (LotjaGi4g1v0116300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNDPLLRNQNAAVQARAKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLSGMAQFVGKFAE PGDAEYSPPIPVAETPAQRRERVHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYG PIKRVGILNIPQKGSVSVSYMFLLFDIFTYKLTSKMDFHI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 168 | 156 | 1.9E-89 | – | |
| PANTHER | 13 | 168 | 156 | 1.9E-89 | – | |
| Pfam | 39 | 127 | 89 | 1.0E-20 | ||
| Gene3D | 97 | 186 | 90 | 8.0E-10 | ||
| SUPERFAMILY | 124 | 168 | 45 | 1.03E-8 | ||
| ProSiteProfiles | 136 | 186 | 51 | 8.757 | ||
| Pfam | 138 | 169 | 32 | 1.4E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0116300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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