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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0116800 |
| Transcript ID | LotjaGi4g1v0116800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein; TAIR: AT5G66780.1 late embryogenesis abundant protein; Swiss-Prot: sp|Q92I70|Y550_RICCN Uncharacterized protein RC0550; TrEMBL-Plants: tr|K7MHA5|K7MHA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0116800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16918432..16920182) extracted from Lotus japonicus Gifu genome v1.2.
CTCATCCCTTCAAGTCCTCATAACCATAATAATATTGATCCATGTTCAACTTTAACTTAGAGCTACAAGTTTCAAATATT TCACACAGAAAAAATGATGTTTCACATGATAAAAAATCTTCGAACACACGCATGGCTTCCACGATCTCTCTTTTCCAACC TTGGTAGAGGATCAACTTCTCCACTAAGATTCTGCACCCACTCTCATAATACTTTGGATAAGACTCAGAAACCAAGTGAA AAATCTGCAGAGTGAGTTCTAATATTTCTTCTGAAAACCATCAAAAGGGGAAATACTAATTTACCTTGGATGAGTATCAT TTGTTATAAATGCATGCTCCAAAAACAGTGTTGTAATTAGTTTTACAGTGGTAAATTTATTGATTTCTGTGTTACTGTAG AGTATATCCCAGATTTACTAATATCAAATGTTAAAAATTGTATGGTACATAATACTTTATTTTTTTTTGAAATCAATATG GTACATAATATTATTCAGGCATTAATTTATTTAGTTAATTCAAGGCCTCAAGGTCATGGAGTTGATCATTTACATTAAAA ATAAAAAAAAATAAATATTGTGTAGGGATGTGAATTCATCTGCGGGAGGGTATGCTCAGAGGTCAGATGAAAAAGGATTT GAAGGGGGAAATGGTGGAAATAATGCAAAGTCAAAAATTGAGATGGATAAGTTCATCCATGAAAATCACCCAGGTTTGTA TTTTCAAATGAGTTTAATTTTGATAAACTAACACTGATTCAGCCCACATATTTAGAATCAATTATCTGATTATTATTTTA ATTTGACTAAATTTAAAATATATTTTCTGACATGTCAAACAATTATTGAATGGCAATGCATGTAAAAAGACTTTACACTG ATCATGAGAATGCGTCAACCATTTTCTGTTTTCAACTACAAACACCCTTTTATGTCAATTTTCCCTATTGAAGTTAACTT TAGTTTATGATTTTTATCTTAATTTTGACTAAATTTGAAATATATTTTTCTTACTTGACAAACAATTATTGGATATCAGA CACTCATATGCATCAATAATTTTCTCTTTTCAAATACGAACACCTTTTAATGTCAATTCTCTCATTCATATTAACTTCTT GTCTTCAATTGGGAGTGAAATGAAGGGGAAAAAAAGAGAGGTGGTCTAATAATTAACTAATGATTTTTGTTTCTTTTGAA GCTTATGACAAGACGCAGGTAAATGAGTCGAAGGAGAAGAAAAACACAAGACACTAAAAATAAGCCACAATGCCTAGGAT ACATTGTGATATTATAATGAAGCTATGATACATTGTGATATTATGTAATTAAGCTATGATACATTGTTATTAATTTAGGC AAAGGCATTTATGTAATTAAGCTATGATACATTGAGATTATAATGAAGCTCTTCAACTTTTATTACAGTCAACACAATAA TACCTCAGAGCACATTCATACATCTACTCACGTTCGAACAGACATTGTAACATGAGGATGCCGTGGATTAATAGATCAGT TCGACATTGATGATAAAACATTTATCATCAAAGTCATGCATCAACAACACTTTATCCATTTCATCTTTTGTTATACAACC CGTTTAAGGGATCCATATTGTGATATTATATTAGTGTAGCAAGTATATTAGTAAACGCGAGCTTTAGGAGGGAATGTTTC AACCTCATCGTCCAGAGTATTCAAGTGCACCGGCCTGTAGTCTAACCGCACCTTCTCGTTTTTCCAGTATC
CDS sequence (LotjaGi4g1v0116800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTTCACATGATAAAAAATCTTCGAACACACGCATGGCTTCCACGATCTCTCTTTTCCAACCTTGGTAGAGGATC AACTTCTCCACTAAGATTCTGCACCCACTCTCATAATACTTTGGATAAGACTCAGAAACCAAGTGAAAAATCTGCAGAGG ATGTGAATTCATCTGCGGGAGGGTATGCTCAGAGGTCAGATGAAAAAGGATTTGAAGGGGGAAATGGTGGAAATAATGCA AAGTCAAAAATTGAGATGGATAAGTTCATCCATGAAAATCACCCAGCTTATGACAAGACGCAGGTAAATGAGTCGAAGGA GAAGAAAAACACAAGACACTAA
Protein sequence (LotjaGi4g1v0116800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFHMIKNLRTHAWLPRSLFSNLGRGSTSPLRFCTHSHNTLDKTQKPSEKSAEDVNSSAGGYAQRSDEKGFEGGNGGNNA KSKIEMDKFIHENHPAYDKTQVNESKEKKNTRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 113 | 101 | 3.7E-17 | – | |
| MobiDBLite | 34 | 113 | 80 | - | – | |
| MobiDBLite | 84 | 113 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0116800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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