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LotjaGi4g1v0120400.2

Overview

Field	Value
Gene ID	LotjaGi4g1v0120400
Transcript ID	LotjaGi4g1v0120400.2
Related isoforms 1	LotjaGi4g1v0120400.1
Lotus japonicus genome version	Gifu v1.2
Description	Carboxyl methyltransferase; TAIR: AT5G66430.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q9SPV4\|SAMT_CLABR Salicylate carboxymethyltransferase; TrEMBL-Plants: tr\|I1MNB4\|I1MNB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0120400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:17387367..17389788) extracted from Lotus japonicus Gifu genome v1.2.

TTGAGTTTGTGTTCACGTAAGTATTTCTCATCTGGTGACAATCTATGTTCCCCCGTTATTTCTCTTCCACACATTGGCAT GCATGAATCAGTGCCAAGAAAAATATGTTTTGCATTTTTAAAGATGATGTTGTTCGTTGAAAATGTGATAGAGTAGAGTT TCTTGGTTTTTGGGCTAGCTTTACATCTAGTTTCAAGTTTCAAAAAAAAAAGTTAGCTTTACATCTATATATACTGTGAT ATGGGGCTCTGATTAAAGGCAAAGAAGCACCAAAAGATTGAGAGTGCAACAAGAGAAAAAGAATGGAAGTAGCACAAGTA CTACACATGAATGGAGGTTCTGGAAAAGCAAGCTATGCAAACAACTCCATACTTCAGGTATCAATACCATAATAACATGT ATGTAAATGTAACGGTATAAGTTTATCCGTTTACTTTTCTAAAAAAAATAAAATTATCCGTTTACTTAATTTTCTGGCTA CTCGCCCCACCCCAATTTATGGCAGTTTCTAACCAATACAAATTCTACATTCTGTAAGAGTTATAAATTGCCACAATATT GTTGTGTCTTTGTTGTGATATCAAGTTGAGTAAATTCTACATTAGAAGATAAAGACAACTTTAAATGGTTTATAAGTGAG GGAATCAATCCACAATTGTGATTTGCTCTTTAATACCCGGTGTGATAATTTTTTGTAGTTGAAATCATCTCCTTTGACTC AATAGTTGTTTCGCGCTTTATGTCATTGGTGATACAGCAAAATGTAATTTCCTTGACAAAACCCATCATAGAGGAAGGCA TAACCAGTCTCTTCTACAACATGCTCCCAACAAGCTTGGCAATTGCAGACTTAGGTTGCTCTTCTGGACCAAATACTTTT TTTGCAGTGTCAGAAATTATCAAGGCTGTGGAGAAGCTCTGTCAAGAGTTGAACCATAAATCTCCTGAATATAATGTCTT TTTCAATGACCTTCCCGGGAACGACTTCAACAACATCTTCAAGTCCCTTGACAACTTCAAAGGGAAATTACATGATGAAA TGGAATCTAGGATTGGTCCATGCTATTTCTTTGGAGTTCCAGGTTCTTTCCATGGGAGGATTTTTCCTAGTCGAAGTTTG CATTTTGTTCATTCCTCTTACAGCCTTCAATGGCTATCTAAGGTTTATACTACTCCCTCCGGTCCTATTTATAAGCAACA AAAAAAAATTCACATAGTTTAAGAAAAATAGTTAAACTAGATAAAATGCATTAAATATGTCTTGAATCAAAATAAACTTC TAAAATTACCCTTTGTTATTAGTATTGGAAAGTGAGAAAGAGATATAATAATTAATGAGACACATTTTACAAGTTAGAAT TAATAAGAGCATCATTGGAAAAAAATAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAATGACCAAAATTTTT CATCTCTTTCATGCTTATAAATAAGACCGGAGGGAGTAATTGATTAACACTTTTTCTTATTTTGATTAATTAAGGGTGAT CACTTTATATTTTAACAGTTGTTCAATGGTTATTAATTAGGTTCCTGAGGGTATAAACAACAATAAGGGCAACATTTACA TTGGCAGCACAAGCCCCTCAAACGTTTACAAGGCTTACTACAAGCAATTTCAAAGTGATTTCTCTTATTTTCTCAAGTGT CGAGCAAATGAACTAGTGGAAGGAGGACACATGGTTCTAACATTTGCGGGAAGAAGAAGCAACGATCCACAGAGCAAGGA GTGTTGCTTCATTTGGGAGCTTATGGCTACGGCTCTTAATGATATGGTCTCGCAGGGAATCATAAAGGAAGAGCAAGTGG ATACTTTCAACATTCCTCAATATAATCCATCCTTGTCTGAAGTAAAATTAGAAGTTATAAATGAAGGTTCATTTGTCATC AATCGCATGGAGGTGTCTGATGTGAATTGGAGCACTTTAGGGAACCAGAATAATGATTTTTATTTTGAATCTAAAATATC TAAGCAACTCAGTGAGGGTGGATACAATGTTGCACGGTGCATGAGGGCTGTGGCTGAACCATTGTTGGTTAGCCACTTTG GTGATGCTATCATTGAAGAAGTTTTTACTCGTTACAAAGAAATCTTGGCTAATCGGATGTCGAAGGAAAATAGTTTCATC AACGTTACTATTTTATTGACTAGAAAAGCATGAGAAAGAAGCTTGAATCTACTATTTATCTTTGAGTAATCTCAAAAATA ATTTCCTTTTGTTTACTTTATTTACCTAGCTGCTAATTAGCTAGGGAGTATCATGTTGTATAATTGTTTGTGATTGAAGT TAAGGAAAGAAACCTAGGAGTATCATGTTGTACCTGGACTAGTAATTGTTTGTGATTTAAGTCATCTATTAATAAAAATA TACTAAATATTTCAAAATTATA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0120400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCATTGGTGATACAGCAAAATGTAATTTCCTTGACAAAACCCATCATAGAGGAAGGCATAACCAGTCTCTTCTACAA CATGCTCCCAACAAGCTTGGCAATTGCAGACTTAGGTTGCTCTTCTGGACCAAATACTTTTTTTGCAGTGTCAGAAATTA TCAAGGCTGTGGAGAAGCTCTGTCAAGAGTTGAACCATAAATCTCCTGAATATAATGTCTTTTTCAATGACCTTCCCGGG AACGACTTCAACAACATCTTCAAGTCCCTTGACAACTTCAAAGGGAAATTACATGATGAAATGGAATCTAGGATTGGTCC ATGCTATTTCTTTGGAGTTCCAGGTTCTTTCCATGGGAGGATTTTTCCTAGTCGAAGTTTGCATTTTGTTCATTCCTCTT ACAGCCTTCAATGGCTATCTAAGGTTCCTGAGGGTATAAACAACAATAAGGGCAACATTTACATTGGCAGCACAAGCCCC TCAAACGTTTACAAGGCTTACTACAAGCAATTTCAAAGTGATTTCTCTTATTTTCTCAAGTGTCGAGCAAATGAACTAGT GGAAGGAGGACACATGGTTCTAACATTTGCGGGAAGAAGAAGCAACGATCCACAGAGCAAGGAGTGTTGCTTCATTTGGG AGCTTATGGCTACGGCTCTTAATGATATGGTCTCGCAGGGAATCATAAAGGAAGAGCAAGTGGATACTTTCAACATTCCT CAATATAATCCATCCTTGTCTGAAGTAAAATTAGAAGTTATAAATGAAGGTTCATTTGTCATCAATCGCATGGAGGTGTC TGATGTGAATTGGAGCACTTTAGGGAACCAGAATAATGATTTTTATTTTGAATCTAAAATATCTAAGCAACTCAGTGAGG GTGGATACAATGTTGCACGGTGCATGAGGGCTGTGGCTGAACCATTGTTGGTTAGCCACTTTGGTGATGCTATCATTGAA GAAGTTTTTACTCGTTACAAAGAAATCTTGGCTAATCGGATGTCGAAGGAAAATAGTTTCATCAACGTTACTATTTTATT GACTAGAAAAGCATGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0120400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLVIQQNVISLTKPIIEEGITSLFYNMLPTSLAIADLGCSSGPNTFFAVSEIIKAVEKLCQELNHKSPEYNVFFNDLPG NDFNNIFKSLDNFKGKLHDEMESRIGPCYFFGVPGSFHGRIFPSRSLHFVHSSYSLQWLSKVPEGINNNKGNIYIGSTSP SNVYKAYYKQFQSDFSYFLKCRANELVEGGHMVLTFAGRRSNDPQSKECCFIWELMATALNDMVSQGIIKEEQVDTFNIP QYNPSLSEVKLEVINEGSFVINRMEVSDVNWSTLGNQNNDFYFESKISKQLSEGGYNVARCMRAVAEPLLVSHFGDAIIE EVFTRYKEILANRMSKENSFINVTILLTRKA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31009:SF84 View details on PTHR31009:SF84 Search for proteins/transripts with this domain View external data on PTHR31009:SF84	4	350	347	2.7E-167	–
PANTHER	PTHR31009 View details on PTHR31009 Search for proteins/transripts with this domain View external data on PTHR31009	4	350	347	2.7E-167	IPR005299 Show description in modal box View details on IPR005299 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	5	270	266	2.8E-131	–
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	5	349	345	2.49E-121	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03492 View details on PF03492 Search for proteins/transripts with this domain View external data on PF03492	27	349	323	2.6E-125	IPR005299 Show description in modal box View details on IPR005299 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.1200.270 View details on G3DSA:1.10.1200.270 Search for proteins/transripts with this domain View external data on G3DSA:1.10.1200.270	141	335	195	2.8E-131	IPR042086 Show description in modal box View details on IPR042086 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0120400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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