Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0125700.1

Overview

Field Value
Gene ID LotjaGi4g1v0125700
Transcript ID LotjaGi4g1v0125700.1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease H-like superfamily protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151S072|A0A151S072_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi4g1v0125700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:18293392..18297017) extracted from Lotus japonicus Gifu genome v1.2.

GTTAGAATGAGCTGTCAATACAGCTGTCATGTGAGCTGTCACATAACTGATTCTGTTAGAGTTGGTAGCTTGCTTAGCAA GCCTTGTATTCTCTATAAATACTGAGATCACTCATTGTAATCTTTAGCTTTTCAATAATGAAATTCAGTTACATGTCTTA GAGAGTTTAACAGTTTTGATCCCCAAAGTTGATGTTCCTAGTCAGATGAAGGAGCTTCAACCCATTAGTTTGTGTAACGT TGTTTATAAAATAATCACGAAGGTGCTGGTCCTTCGTATCCTCCCTTCCTTGGATCAGTTTATTGGCCCCCTCCAGTCTA GCTTTATTCCCGGGCGGGGGACCACTGACAATGCTATCTTGGCTCAGGAGGCAATTCACTTCCTTGATCACTCTAAAGTA AGAAACGGCTCTATGGCTTTCAAAATTGATTTGGAAAAAGCTTATGACAAGCTTTCTTGGGGTTCTTGGAGGAAACTCTT AGGGACTTTGGGTTTCCAGACCTCATTATTCGCCTTATCATGAGCTGTGTGTCTTCATCCAGGCTTGCTCTCCTTTGGAA TGGTTCTAGGCTCCCTTGGTTTAGCCCTGTTCGGGGTCTCCGCCAAGGGGATCCGTTGTCTCCCTACCTTTTTGTTATGT GCATGGAGAAGCTTTCAGTTCGCATTCAGAATGCAGTGGATGCGAGTTTGTGGCATCCAATATCTCTTTCTAGAGGTGGT CCTCCTCTTTCTCATATTTTCTTTGCAGATGACGTGCTTCTTTTTTGCAAGGCCTCTAGATCACAAGTTGAGATGGTTGC TGAAATTTTGGAGGACTTTGGCTCGGCATCAGGTTTGAAAGTTAGTGCTGCGAAGTCAAAGGCTTTGTGCTCTAAAGGGG TTCCCCAAAGTACCCGTCGAGATATTGCAGTTGTTTATCCCATCAGAATTGTTCGGAACCTGGGCAAGTACTTAGGTTTT CCAGTGATCAGTGGCAGAGTATCTCATGGTGATTTTGATTTTCTTATGGACAAAATTGAGAGGAGATTAGCAGGCTGGAA GAGTCGCCTTCTCAACACAGCAGGAAAAATTTGTCTTGCTAGGTCTGTTATCACAGCAATTCCCACTAACTATATGCAAG CGGTCTGGCTCCCCAGGAAGACAATCCATTTGATTGATAGAGCGGCTCGAAACTTTATTTGGTCTAACTCCGCTGCTAGC CGTGGGTGGCATCGAGTTAAGTGGGAGATTGTTACTCAGCCCAGGCATGCCGGAGGGCTTGGGATTAGAGACGCAGCGCT TGCAAATACCTCCCTGCTTGGCAAACTGGTGTGGAACTTGTTACAACAATCTGACAAACTATGGGTCCAAGTGCTTACCC ATAAGTATATAAAAGACCATTCTTTGTTGGAAGTCTCGGCCAAACCTAGTTCTTCTTCCCTTTGGAAAGGGGTGTTGCGT GCTGGAGATGAATTAAAGGACGGGTTTGGTTTCAAGTTGGGGAACGGTGAGTCCTCTTTTTGGTACCATGATTGGAGTGG TCATGGAAACTTGGCAAATCACATCCCTTATGTGGATATTCATGACATCCATGTGTCTCTTAGAGATTTGGTGATTGGAG GGGATTGGGTCACGACTAGTTTGTATACTGTTGTCCCTTCTTTGATTCTGCAGAAGCTGCACGACATCACTCCTTTGGTG GATGATAGACTCCATGATCATTGGACGTGGAAGAAGGGGAGACAAGGTGTGTTTACTGCTGCTGCTGCATACTCCTGGCT TCTTGAGTCTTCTTCCCAGCTCCCCCCCTCTACACCCGATTCCTGGAAATGGATTTGGAAAATTCAGGTTCCGGAAAAAA TCCGGGTCTTTGTCTGGTTTATCATGCAGGGTGCGATCCAAGTCAATAGCTTTCGGTTCAGATGCAAGCTTGCAAATTCC CCTGCTTGCCCGCGCTGTCAACATCAATTCGAGGACTGTTAGAAATCCTTAGTTAGAACCACACAACACCACAAAACCTT AGGCTTAAGGCAATGGGTGTGTGTGTTCTTTATTATATATGCACTTGTGCACTTGCTAATCTTGGCAATGTGGGACTTCT TTGAGTTACCACTTCATTATCTCTATTACTCCCCCTCAATTGAGACTCCATTTTTTTTTTTTTGCCTGTGCCTTGCACTC CAGCGGGAACATCGGTGGTCGTCGGACTTGTGCTCCTTCGTCTGAGTCTGCCTTTCGACTTTCTTTGTCTGGGCTAGTAC TCTAGCGGGAGCATCGGAGTTCCTTAGACTTGTGCTCCTTCGTCTGAGTCTGAGGCCTTGGCTTGCGCAAATGGGACTGC CATTTTTGCTTTTTTTTTCGGATTTTTTTTTACTTTTTTTTTTGTTTTTTTTTTTTTGGAAGCGGAAGTCATGGCTTGGA TCAGACCAGCTCTGATACCATGTTAGAAATCCTTAGTTAGAACCACGCAACACCACAAAACCTTAGGCTTAAGGCAATGG GTGTGTGTGTTCTTTATTATATATGCACTTGTGCACTTGCTAATCTTGGCAATGTGGGACTTCTTTGAGTTACCACTTCA TTATCTCTATTAAGGACATCTTGCATTGCCTCAGGGACTGTAGAATTGCGCGTGATGTCTGGGTTCGGCTTAATGCTCTC GGGTGGCCAGGCTTCTTCATGAGTAATGCCCAAGCCTGGGTAAAATCGCAAGCTCAAGGTCCTCATGCTTCTCTGTTTTT GACAGCAATATGGGGTATATGGAGATGGAGGAATAATGAAGTCCTAGGCGATAACGATTGGACAGTGGTAAGCACTGTGA ATTGGATTATTACGGAGCACAGGGACTATGATCTATTACTCACGAGAGGTCTGTCGTTGTCCACGGTCGACGATGCTCCA GTCCGTTAGGCTCCCCCTGTTTCCGGTGAGTACAAAATGAACTCAGATGGGGCGTTTAAGCATGATGATGATCGAATGGG AATGGGTGGCATTGTTCGGAATGCCCATGGTGCTTGGATATCCGGTTTATATGCAGGTAGCCTCGGAGGAGATGCTCTTC GGGCGGAGATTGCAGCTCTAAAGCATGGTCTAACACTGTTGTGGAATGCCAATATTAGGAGAGCTACTTGCGAAGTTGAT TGTTTGGATATTGTGGAAGCTTTGGAGAATGATCGGTATCAGTTTCATGCCTTGGCGTCTGAGCTCCTGGATATTCGTCT TCTCCTGGATCGGGATTGGACTGTTACTCTTGCTTATGTCCCTAGAGAGGCGAATGCAGCAGCTGATTGCCTCGCAGGAC TTGGAGCTAGCCTCCTTTGCCCCCTGACTTGTCTTGAGAGCCCTCCTCAAGAGCTTCAGCCGATTCAGGCTAGAGATTTG TTAGCTTTGTAGTTTTTGTTTCTTGTCTGCTTAATTTTCCGATGTACAAAAAAAAATGTCTACTTGAGGTTTGATACAAA CAGGTAGCCCTTTTTAATATTTGGTTGGTGGTAAGATAAATGAAGCCTGAAATTGCTGAAAGATACATTACATTATTCCT GACATATAGGGATAAAATAGTAAAAGTATGGCCCAAAAAAGCAAAAATAATAATAATAGTGATTATTACAAGAGATTGAA GATCTTTAAGTTTAATCATCATAAAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0125700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACTCAGATGGGGCGTTTAAGCATGATGATGATCGAATGGGAATGGGTGGCATTGTTCGGAATGCCCATGGTGCTTG GATATCCGGTTTATATGCAGGTAGCCTCGGAGGAGATGCTCTTCGGGCGGAGATTGCAGCTCTAAAGCATGGTCTAACAC TGTTGTGGAATGCCAATATTAGGAGAGCTACTTGCGAAGTTGATTGTTTGGATATTGTGGAAGCTTTGGAGAATGATCGG TATCAGTTTCATGCCTTGGCGTCTGAGCTCCTGGATATTCGTCTTCTCCTGGATCGGGATTGGACTGTTACTCTTGCTTA TGTCCCTAGAGAGGCGAATGCAGCAGCTGATTGCCTCGCAGGACTTGGAGCTAGCCTCCTTTGCCCCCTGACTTGTCTTG AGAGCCCTCCTCAAGAGCTTCAGCCGATTCAGGCTAGAGATTTGTTAGCTTTGTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0125700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSDGAFKHDDDRMGMGGIVRNAHGAWISGLYAGSLGGDALRAEIAALKHGLTLLWNANIRRATCEVDCLDIVEALENDR YQFHALASELLDIRLLLDRDWTVTLAYVPREANAAADCLAGLGASLLCPLTCLESPPQELQPIQARDLLAL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46736:SF5
1 149 149 1.1E-27 –
PANTHER
PTHR46736
1 149 149 1.1E-27 –
ProSiteProfiles
PS50879
1 125 125 8.715
IPR002156
Gene3D
G3DSA:3.30.420.10
1 125 125 2.0E-15
IPR036397
CDD
cd06222
2 120 119 1.14548E-28 –
Pfam
PF13456
2 120 119 8.5E-22
IPR002156
SUPERFAMILY
SSF53098
2 128 127 7.08E-15
IPR012337

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0125700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…