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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0132000 |
| Transcript ID | LotjaGi4g1v0132000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | COS26 protein; TAIR: AT5G66090.1 cell wall integrity/stress response component; Swiss-Prot: sp|Q9SKC2|ARI11_ARATH Probable E3 ubiquitin-protein ligase ARI11; TrEMBL-Plants: tr|I3SG33|I3SG33_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0132000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19320044..19324794) extracted from Lotus japonicus Gifu genome v1.2.
CATTAGGTCATCCAATTATAAAAATCTCAAGTGGAATCCAAACCCTAATATAGGAGTATAATTTTGCTTTCCATCTCTAT TTTTTATTTAATTTTTATAATTAGCCGCTTCCGCTAGTAATAATCTGTCTCCTTCTTCTCGAACACACTCGAAAATTGTT CTTCTTCAGTCTTCACTGAATACCAGTGGTTATGGCATTCGCTCACAATCTACTCCCTATTCCCGCAAAACCCTCCCCTA AGTGCCCACTTCCTTCCATTTCGAACCCATCATGTTCGATTTCATCACACTTCCCCTCCAGAGCTCAAAATCACTCACTA GCATTTACCACACTCCGCAGAATCATCAATCACAAAGGTAACAAAATTTCAAAAAATCACTTAATCACGTTTCATGTTTG TGTTTTGAAGCCACCCCATTTCGGAATTTCTATTAATTGCTTCTTTTTTTGGTTGGTTTTGTTCTGGGTTGTATTGAAAA GTTGAAATGTTCAGTTTGATTGTTTGCATGTGAATTCAGCTAAGGCTACACCACAAGAACCTGAAGTCAGTGCAGGTGCG GCCATCGATGCGTTCACACAATTCAAGCATCTGCTTTTGCCTATTACAGATAGGAATCCCTATCTCTCAGAGGGAACAAG ACAGGTGAATTTTAGATAGGTTTGAATTGTTATTGTTTCTATGACTGGTGAAATGCTGGGTGTTGCTATTTGTCATCAAA TTTGTGTTTTTCTTCAGCTAACAATGACTTGTGATTGTTGTCTTTCTATTAGGCTATATCTACTACTACTGCTTTAGCTA AGAAGTATGGAGCTGACATTACAGTTGTAGGTATGTCACTATGTGTTTATACCCTTTCAAATTTTAATTGGTTCTTATGT TTAGCTGTATAGGAAAACCCTTTTACATTTTAGCTTTGTGTGCTTTATATGCTTTGTAGTTATTGATGAACAGCAGAAAG AGTCACTTCCTGAGCATGAGACCCAACTATCCAGCATCCGTTGGCATATATCTGAAGGTTTGTAGAAAGCTATTTTCTTT ACTTATTTTAGTTTATTGGATTTTATTTTTTTGTCGATGCCCTGGCAATAATGTGTTTCTCATTTGGTGAGCATACTTTC TCAGTGTTTGCAAATTTCTGAATGTTTAGTTAGTTACTTAGTTTTATAGATTTGTGGTGAAAGTGAATCATGAATGGCTA AAGGACAAATTCAATTTAAGAGCCTTGAAGGTGTTGAGCAATATATCAGCGAGATGGCCCATAAACCTAATACCTTAAGG TTTAGGGTGAAAAATGTGGTTTCCAAGTCTTGGTGTGGTTTTCTCTTAGCCCAGTGTGAAGATCTCCCTACGATTTAAGG CATATCACAGCCCAAGTCACAGCCCAACAGTGATATGATATCAGAGCCGATGGTTATGAATATGATGGTGACCGGCTCTT TGTATATAAAGTCTTCCTGACAATGTGGTGGTCAGACGGTGTGTCCGTTGATGTGATGGGAGCCAATGGCAATATGAGTA TGTGGAGACTTCCACTTGAGTTGAACTCGCACTTGAAGGGGGAGAATGTTAAGCATCTAGGTGTGAGTAAGAAGTCCCAC AATAGATGAAAAAAAGTGTGTTGAGCAATATATAAGTGAGAGGTACATACACATTAGCCTTAAAGTTTTCAGTAAAAGAT GATGTTTTCAGTAAAAGATGGTGTTTTCAAGTCCCTGGAATTTTAGGTATCTCATGGCCCAACATAAGGTTCTTTATAGA GTGAATAATAGGATATCATAGCTTCCATAAATGTGACATAGTGAGTTTGTTTGATACACATTGAGGTACATCCCAAACAG AACAACACAAGTCATTAAGCTACAAATAAAACTTCTTGTTCTATCTGTTATGTGGTGGTTGACGCACAACCCAGGTAGTT TTTGAGGGAGAGAAGAAGGCTTGGGGAAGAAAGCTATCAATAAGGTTGGACATTTTGTAGTTTTAAATGATAGATTGTGG GACAAAAAATTGTCCCCTAGTTTATTGAGTAATAAAAGTAAACTTTCATCCAGTGCTTTATCTTTTGTTTTGTCTGATCC CATGACCATTTTTGAAATCAAGCATTGAACAAGTTTTTTTATGGTGTCCAATTCTTCATTTTTTAACAAATCAAATACAC CTACAGTGCCAAGAATAATGTCACTAGGTTTATTTGTTTTCTCTAAGAAGTAATAGTTTATATGTTATGTGATGGTTATT TGAATGCATTGTTTTAATTGGTCTTTCTAAAATTTTGGTTTGACAAAGTACTCTAGCTTCATTTTATCTTTGTTGGAGAC TCACCTAATGAAGAAAATAAAAAGAAAAAACCTGTTGCTTATTGTCTATGGGAATTCTTTGAATTTTAACGGCAGCGGAT TATTTATAGGTTATATTGGATATACAGCTATTATAAGAGTTTCATGTAGTCTGAAGACATTAAAAAGTTAGGGAATTGGG GGGTCTTATTTTTTTGATGTCATATTTTTATGATTTTCAAGTAACCATTCATGCCATAAAAGTCGGGTTCCCATCTACAT GTTTTGTATTTCTTGATAAAACATACAGGTGGATTTAAGGACTACAACTTGCTAGAGCGGCTAGGTGAAGGGAGCAAGCC AACAGCAATTATTGGTGACGTTGCTGATGAACTTAATTTGGATTTGGTAGTTATTAGCATGGAAGCAATTCATACAAAGC ATATAGATGCAAATTTGCTTGCTGAGTTCATCCCCTGTCCTGTCATGCTTTTGCCATTGTAATTTGCATTTGTTTCTAAG ATAGGAAAATGATTTACTTCTATAATCTGCTATAACTTCTTTGCTGTGAAATTCCATGTTGTTTAGCATTTGCTACTGCA GCGTCAGGGTTACTTTGTTGAAAATGCATAACTGTACCTGACTGAGGTGGGGTGCTTATATGAAATTTCCATCCTTTTTT GTGAGCATTTCATATGAGAACTGTTGCTAGTGCCAATGAATGTGGGTGCCTATTTAGATTTTCCGTGTCTCTGTTGATTT ACCTTGTCATTTGGTAAACTCATGCTGGTTTGTTTATTGCTTGCTATGGTCTCTCTTAAACAAAATTCATATTCATGTGC CAATTGCACTTTCACTTTGCACTAGATTATAATGAACTGTGGTAAATGTATTTACTTTGGATAAATCCCCTATTTATGGT GGGTCAAATACCCCCATTTTCATTTAAATTTCCCTCCTCTCTTTTCCTCATTTGAACCAAATGAGGGTTAATAATTATTG AATTCAATTCAGAATGAAATGTTCTGAAATTTATAAGTATCATTTGAAATCATCTCGTAGAAATATTTTCCATCATGTTA ATGTAGAGTTTATTTGGGTGTAGAAATACTCAACTTTTAATAAGGGTAACTTTGGTCATGGCAGAGTGTCCTGAGCAGGG TGGGTATCTGCAAGGCACTCTGACACTCAAGTTAACAAGGTGAGAGAAAATTAAGATCAGGGTAGAAAGAATGTGTTCCT CTCTAAGACTCTAACCTAACCTAGAGAGGAACATGTAAAGATAGGATATAATATTGTAACAAATACAATAAGTAATAGTA GATATTACCTAAATTAATAATTCTTATTTTCTTAGGCTATGTTTGGATTGATATAACATAATGAAACCGAATATAATAGA GTATAATGGAACATAATGAAATAGGATGGAAGGAAAAGGAATGATATAAATATCTCATTCTCTTGTTTGGATATTTTAGG ATAGAATGAGATAAATTTGCTCCTCCATTCTTTAGATAATGGGCTGAATAAAATGATTCATATCTTTTTTATTCATATTT TACCCATTCTTTAAAAATATTAATTTTTAATGTATCGTGACTTTGATCTTATTAGTTATTACTAATTATTCAATCTACAA AGTTCATTTGTACTAATTTTTCATTGTAAGTGGAAGCGTGGAGGATAAGAGAGGAGCTAGCCAATGAGAATTCTAAAACA GTACTGCAACTAACAACCTGACTATCAAACTTGATAGAGTAATCAAATTAGTGAACAGAAAGCATTAGAATAATGAAAGA AGAGCATGGGGACTGCTTCTCTCTTTGTTGTATGTTGCTTTTCTTCTGCCAAGTAGTTTTACTTAGCTCCTTTTGTTGAA AAACTTATATGACCTGAACCTATTAATCCAGTTGTAGATACTAGAATGCAGCATCCAGAAGACAAATGATTATGTCTGTA TAAAGAAACCATGGTTGGCACTATGCATAGGAGCACTCTTGGCCTAAGTGAGACTGTTGTGCATAGAAATTCAAGTGGCC TAGCCTTCCTTATTCGATATACTCGAGATTTGGGGCCAGCATGATAGCTCTTAAGGCAAGTGTCTAAGACCAACCTTGGA AGGAGAATTTTGAAGTCAGTCTATACAACATACGCGTTCTACTACTAGTTATGAATTTGTGTCGACTGTTGGGGCTATGT TTGTTGCACCAGCGTAGATTTGGCTTATTGACACTACGGTTAGCGTTGGTCAAAAGCCGATGCTAAAACAATGAGCTTCA AGGCATTTAACACGAGTTATGACGCCGAAGTCTTAGCTGTATTTTGCTTTCCTTCTGCAAAGTAGTTTTACTTTGCTCCT TTCGTTGAATAACTTAAATGACCTGAAGCTTGGGGCAATTCTTGAGCATGTCCAATACAAAAGACCAAGAAGGATATTTA ATCACCAAACAAGTTAAATTGGAAAACACAG
CDS sequence (LotjaGi4g1v0132000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCGCTCACAATCTACTCCCTATTCCCGCAAAACCCTCCCCTAAGTGCCCACTTCCTTCCATTTCGAACCCATC ATGTTCGATTTCATCACACTTCCCCTCCAGAGCTCAAAATCACTCACTAGCATTTACCACACTCCGCAGAATCATCAATC ACAAAGCTAAGGCTACACCACAAGAACCTGAAGTCAGTGCAGGTGCGGCCATCGATGCGTTCACACAATTCAAGCATCTG CTTTTGCCTATTACAGATAGGAATCCCTATCTCTCAGAGGGAACAAGACAGGCTATATCTACTACTACTGCTTTAGCTAA GAAGTATGGAGCTGACATTACAGTTGTAGTTATTGATGAACAGCAGAAAGAGTCACTTCCTGAGCATGAGACCCAACTAT CCAGCATCCGTTGGCATATATCTGAAGGTGGATTTAAGGACTACAACTTGCTAGAGCGGCTAGGTGAAGGGAGCAAGCCA ACAGCAATTATTGGTGACGTTGCTGATGAACTTAATTTGGATTTGGTAGTTATTAGCATGGAAGCAATTCATACAAAGCA TATAGATGCAAATTTGCTTGCTGAGTTCATCCCCTGTCCTGTCATGCTTTTGCCATTGTAA
Protein sequence (LotjaGi4g1v0132000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFAHNLLPIPAKPSPKCPLPSISNPSCSISSHFPSRAQNHSLAFTTLRRIINHKAKATPQEPEVSAGAAIDAFTQFKHL LLPITDRNPYLSEGTRQAISTTTALAKKYGADITVVVIDEQQKESLPEHETQLSSIRWHISEGGFKDYNLLERLGEGSKP TAIIGDVADELNLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 206 | 206 | 2.9E-98 | – | |
| SUPERFAMILY | 77 | 204 | 128 | 4.81E-6 | – | |
| Gene3D | 77 | 206 | 130 | 1.4E-5 | ||
| CDD | 79 | 203 | 125 | 7.70404E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0132000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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