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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0134500 |
| Transcript ID | LotjaGi4g1v0134500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A1B5Z9M8|A0A1B5Z9M8_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0134500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19633565..19639578) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGGTTCTATCATGAACATGCTTTGGTTTCTTCAGATCCTACTGTTACATCGACAGGGACGTATGATCAGGTTAGTTG CCTTTGATATAAAGTGGACACTACCACTGAGAGTAAGAATTCTAGTTTAACTTCTACTTTTTTTTTTGCTGATGCTTTAG AAGGGTCAAAAAATGATTTCACTCATTGATGTCTGAATTCCTAAATTTACAAAAGTAAGAAGAAGTTTTGAAATAGGCCT GTTTAAATCATACAGTTCCCTGAGCTTATGCATGTTCTGATTCTTAGTTTGAGTTTATATTGATGATGTGATTTAGTTAA TTGTGTGCAGGAATGACAGAGGTGATGCTTGTTCATATTACTTCATGCTTGGGACAAAAACAAATACACTAGAACACTTT ACTGTTTGCATCTTGGTTAGCTTTATGCCCTACTTCAAGTATTAAAAATTGTTGTGTATTGGTTACTGAGGGTAAGGTCC ATGAAGTTTGGTGTGTTTAATTGCAATTTAGGCTCCATATATTAGCTTTTAGGGACCCCTATCCTTTAGGAACTTTTAGG GGGGCCTCAATACCCTTATATTTGTGTAAGCCACTTATTAGACTCACTTGCTAGTTTAATCTCTGTGATGGATGGTTTCA AATGCGCAAGTGAATGTAGCTAAAACTAAAATCGGGTGGCAAAAAGAATCTTTTATATCTCACTAAGATAGTTCATTTGC AAGAATGGCTGTTATGTTACTATTCATGCCTTATGCAGATTATTTCGCATCCCTTCATGCTCTATATGTTTCTCCAAATG TTTTCCATCTAGCTGTGATACAGACTTAGCTACTACTATTGTGAGATTTTAACTTGATATTGTTTTCATTCCATCAAAAT TAGCTTCCTCTTGTACACTACTTTTGATGTCCACTTATCTGATAATATGCGATTCTTTTTGTTATATGATCATGTCAATT TTCAAGTTGACTTAATGGCAGCAACTATCCTGTCAGTTTTGCTTATGATCGACAATTGATGAACCACAACCTAGATGTAT TGAAAATATTTTATCAGCTTCTATCTTAAATGTGTTCCGGTGCTGAAATTCCATGTGCTTATGATCGACAGTGGATGCAG TTGCAGCGCAAACCAAAACTGCCACTAATGGACACTAATGAGTGTAAACTGCACTATGTTGAAATCGAGGTCAGATTGTA TCCTTTGAATTCTTCTTTATTATAGTTTACATAGTTGTTAAGGGATTGTCTAATTTAGCCCCTGAGGTTATAACCTCATT TTTGCTAGGTCGACCAAAATTTCTATAATTCTGATCTCACGAATCTTAAACACTTTTGGTCCACTTTGGATGAGCTTATT TAACCGTGTCAAACTTAGATAGGCCCTTGTTGTTAATCATTTTCAGTTTATCAAGTCATATTGACTAATAATGGTTAAAA CAAGCCTGTTTAAACAACCACAGGAATGGAAGTTAAAAGAAAGATTACATGTAAGAAAATTTCTCAAGTAACCAAGCCTG TTTAAGAAGAACAGAAGAAAAGTTTAGCACTGTTCTATTGCTTCTGAACTAGCACAACTGTGTTTTGTTTGAAAATGGTC GCGTGATGAAACTCGAGACACTTATGCACAGCTCTAGTGCTCAAACAAGCTGTTAGAAAAGTGCTTTCTGCTTTATCAAG AAAAGTAGTTAGGATGGTCGAAATTTAATTTTTCTCAGAGACTTTCTTCTTATCACAGTCTTTTCATTTTTCATGCGACA CTTTTCAGTGGGCTTTTTATTTAATTTCTTACTATGCTTGTCTATACTCAGCTTATTTGTTAAGTAAAATTTCACCTTTC TCATCTCGAATATCAGCATAAGCCTTATTGATGCATATGGGAATTCACAGTTCAGTTGCCCCAATAGGTCATGGCTATGG ACCACAAGAGTCAATGTGACATTGAAACTATATCTTCACCTGAAACGTTCAAGGGATTAGATACATGGGTATGTTCTCTT GATATTTATCATAATTTTGACCAATGTGTGTGTTCATGCTTTTATCCTTAAGAATTTTCTATTATACTTCCTTACTTTGT TGATGTTCTTATCCTCTTAACCTGTGTGTGTTTCAAGCATTCAATTCCTAAACTAATGGGGGATTTTGCACTTAAGAGTT TTTTCTACCAGAAATACTTATGGTCACAGATCAAATCATTTTTTTCAAGCTTTTTCATCCAAATAAAGCTGAGCATGTGG TATTGCAGCAACAAGTTTTTATTGCAGTTTGCATTATAGAACCATGATTTTATCTGTTCGTTTTATTCCATGTGTGATAT TCTGATCGGAATATCGGATACAAAATAGAAGCCAGAAATCCACCAAACTGTTATATTGTACACCGAATTTCAGGATTAAA TTGAAATCTCTCCCTCTTGTTTTTTCTTCGTACCAAAGACAAATCTAATCTTCTTGATTTGTAATCAATTTATGTTTACA ACTCATTCCAATCTTAACTTATTTAATGTCTTTCAAAAAAAAACTTAATTAATGATTACAACTGTTTTAATTTTAGAATG AATCTTCAAAGATATTGTACCGTCAATTAAATCCTAACCCATTTTAAGATCAATCTAGATTTACATTAAAGATTTCCACT GATTTAATTTAAGAATGAATCTTTAAAGATATACATTTTAACGTTAACATTTTTGCCTATATATTAAGGGAAGAGCCACC GCTTCTTTAATTCAGTCTCTCACACACTTAGCTGCTTATTTTGTTTCAATATCGATCACAATTCTCCATTTGCGCGCTAT CATCTCTTTCTCTTCAACACAGTTGACAATATGGTTAGTTCATTAATTTCTTTAATGATTTGTTCTTTTTTTTTCTTAAC TGGGTGTTAACGTTGTTTTGTTCAATTTTTTTAATGATCAAGATGTTGTTATTTTTCTTCTTAACTGTGTATTAACGTTG TTTTGTTCAATTTTTTTAATGATCAAGATGTTGTTCTTTTTCTTCTTAACTGGATGTTAACGTTTTTTATTCAAACTTAA CGATTTCGGTGTTGTTAATTTTCTTTTAATCGATTTGCAGATAATTTGTTGGCCACGCCCCTCCGAGAATCAGGTGGCTC TTGATATTGATGGGAGTTCGTATGGGAATCCTGGCAGAGCAGGCGTTGGAGGTGTTATAAGGGATGACAAAGGCAATTGG ATAATAGGATTCAGAAACCATTTCAAGTTTGCTAGCAGTCTAGAAGCTGAGCTCTTAGCCATATTACATGGCTTAAGAAT AGCTTGGGAGCTTAATTTTAAGGATGTCAGCTGCAGAACGGATTGTGCCAAAGCTTTATCAATGATCGTAAACCCCGTAC CTGAATCTCATAAATGTGCTAGGATTATTTTTCGCATCAGAGAATTCTTTGGCAGAGACTGGACTATATCAATTTCCCAT ATTCATCGAGAAAGCAATCAATGTGCGGACTTTCTAGCTAAGGCGGCTGCAAATAGTAAGAGTGGCTTAATGATTTTTTC CAAGCCTCCAGATGCCCTTTCTTCAATTCTCTTGGCTGATGCGAAGGGAACTCCGTATCAAAGGAAGGACAAAGTTAATT GTATGTTCTCTTGATATTTATCGTAATTTTGACCAATGTGTGTGTTCATGCTTTTATCCTTAATAATTTTCTGGTCTACT TCCTTACTTTGTTGATGCTTTTATCCTTAACCTGTGTGGGCTTCAAGCACTCAATTACACAATTAATGCTTTTAACTCTT TTTTTATAATATTTTATAGGAAAAAGGCGACCTCCACCCCAACTATATCATTTTTGGAGTCCATGTTTTCATCCTTTTCA TCCTTCTCCATGTTCTGAGGCTGGTCCTCCTACTCTGCTGATGATAGGGGAGTTTTCTTTACCTTTGCTGGTTTTTTTTT CTTCACTTTTAATGGTTTAATTGCATGTGTTGTGTTCTGTTGTTGTGTGTTTTAATGCTTTGGCTGCATGTTTTGTGTTT CTTTTTTTTTTTGAATTTTGGTCTTATTTTATTTTGCCTGTATTAGTAGAGTCAGTCAAAGAAAGAGTGATTAGTAGAGA GTTTTTGCATGCCTATGAAATGAATGTGAATATGTACTAGTTTTAAACCTTTTTAGTTTTGGTTATTAGTGAAAACTGTT TTTTAAGTGTTGGGTGCGTTGTTAAATATGTCAGTGTGTCTCTTGTCAATATGGAAAGCAGTACTCTTGTGGGGCTGTAT CAAATGTGTTGCTTTTATATTTACTTAGCAATATTCTAGTAGTTGCATTTCGTTATTTGCCTTGATTGAGCACTAAATTC TACTACATGAATTAATAAACGTCTAAACGGTATTTGAATATTCATCAAAGATGTGATAGTTGACACATAATAACTTAAAA GGGTGCTCTGATGTAACTCCTCGGTCTTAGACAAATTGAGCTTCATAAAAATATCTGAAGGGCATGCATAAGCCATAAGC TTCACTATGTTGCTTGCCTCACCTTGGTAAGGACGGGCCACTTCTATCAAATGAGTGTGTGTTCGATCCCGCTGCTAAGG TGAGTGCTCAGTCGGTATGGACAGGCTACTTCTGTCAGAGGATTGTGTGTTTGTTCCCGCTGCCGACTGATTGTCAAAAA TAATAAAAATGTCGAAGGACATGAGTGAGGCAAAAGAAATCCCTAACATTAATAAGTGTTGACCCATCAATGGTGTTATT TAAATTACTTATAAAAGACGTGACAAAAAAAGGGCTCTACTCCGCTGCCAGTGAGGCATGAGTACGTCTAAGAAACTCAA CGGTTGAAAAAGTGGGGAGGCAATTACCATCACCACATCCCGGGACCCCATGTAGAATTTGTGTTCCTTCTTTGGCAGTG AAGAAATTCAATGAAACAAAAGTTGCTTAGATGTATAAAGGTTTTCCATTTGTGTGTGTCCCTGGGTTTGCTTTGTTTTT CTTGCTTGAGCACACTCCTAATTTAGCTTTGCACCTAACATTTAATTTGAGTTTTCTATCTTTTAGCCTTTACTATGGAG GTTTGTTTATGGGTGCATTTCCTAATTTCATGGCCGGGAATGTCGGTGGGATTTTTTGTCTTTGTATTTTTGTTTGCTCG CCATGTTGGGGTAGTGGGGGTTTAGGGTGTTAAGTTTTAAATATTTTTTTCGTTTTTAAGTTTCATTAATGTTTAGTTTG GATTTTGTTTAGATACTGAACATTTCTCATAATTCTTGTGTTGTTTTTCAGAACACTGGACGCTATGGATGTTGGGTGAG CTAGTTCCATAATAATGTTACAAAGGGTCCAGTTGCTGTGCAAAAGTAGCTGAAACAACCTATTTTCTCTGTGGAGATGC TGGACAGGTTCATTGATAACCTTTTTATAATTTTCTTTTTACTCAACTTTTTCCTTTATCCTATTTCCGCACACTTGTAA TTAACCATTTCTTTTATGAACTTCAATTAATAGATTCATTATGCTTTTATTCTTTCTAACTCCCTTACTTTTTTAATAAC AGAAAATCCCTGATGATCTCAAGTTTCAGTAGAAAAGCAATGCTGGCTGAGGAATTCCCTGAAGACGCCCAAGCTAGCAT TTTTTTTTTGTTGTTGTTTGAGAATACTATTTGTACTTATGATTTTTATAGTGGATATTTTTTTTCTGGACTAGGTCCCG TGGTTTTTACCTCTCACAATTCTCATATTTATTTTTCATTGTGAGAATTGTGAGAGGGTTTTCCACGTTAAAAATCTGGC GTATCTTTTTCTTTTTTATTTATTTCTTTTCCTCGCTTAAAATTGATCACAAAAGTGACTAAAAAATTGGAACATATTAT CGCATCCCAAATATGAGAATTGATTTTACAAACCCCAACATGAAACCAAACACATATTATCGATTGAGTGTAGTGCTTTG TAAATTTACAACATGAAAACAGCTTATAATTTTTTTTTCTTACTCCTTTGTTATTCCTTCAAGGTTTAGAAATAAGGTTG AATTATGCTTCCAC
CDS sequence (LotjaGi4g1v0134500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGGACCACAAGAGTCAATGTGACATTGAAACTATATCTTCACCTGAAACGTTCAAGGGATTAGATACATGGAT AATTTGTTGGCCACGCCCCTCCGAGAATCAGGTGGCTCTTGATATTGATGGGAGTTCGTATGGGAATCCTGGCAGAGCAG GCGTTGGAGGTGTTATAAGGGATGACAAAGGCAATTGGATAATAGGATTCAGAAACCATTTCAAGTTTGCTAGCAGTCTA GAAGCTGAGCTCTTAGCCATATTACATGGCTTAAGAATAGCTTGGGAGCTTAATTTTAAGGATGTCAGCTGCAGAACGGA TTGTGCCAAAGCTTTATCAATGATCGTAAACCCCGTACCTGAATCTCATAAATGTGCTAGGATTATTTTTCGCATCAGAG AATTCTTTGGCAGAGACTGGACTATATCAATTTCCCATATTCATCGAGAAAGCAATCAATGTGCGGACTTTCTAGCTAAG GCGGCTGCAAATAGTAAGAGTGGCTTAATGATTTTTTCCAAGCCTCCAGATGCCCTTTCTTCAATTCTCTTGGCTGATGC GAAGGGAACTCCGTATCAAAGGAAGGACAAAGTTAATTGA
Protein sequence (LotjaGi4g1v0134500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMDHKSQCDIETISSPETFKGLDTWIICWPRPSENQVALDIDGSSYGNPGRAGVGGVIRDDKGNWIIGFRNHFKFASSL EAELLAILHGLRIAWELNFKDVSCRTDCAKALSMIVNPVPESHKCARIIFRIREFFGRDWTISISHIHRESNQCADFLAK AAANSKSGLMIFSKPPDALSSILLADAKGTPYQRKDKVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 187 | 161 | 4.7E-45 | – | |
| PANTHER | 27 | 187 | 161 | 4.7E-45 | – | |
| ProSiteProfiles | 34 | 164 | 131 | 14.838 | ||
| Gene3D | 36 | 169 | 134 | 1.3E-23 | ||
| CDD | 42 | 160 | 119 | 3.03264E-42 | – | |
| Pfam | 42 | 162 | 121 | 1.3E-25 | ||
| SUPERFAMILY | 42 | 165 | 124 | 6.83E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi4g1v0134500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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