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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0136000 |
| Transcript ID | LotjaGi4g1v0136000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heterogeneous nuclear ribonucleoprotein; TAIR: AT5G66010.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9Z2X1|HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F; TrEMBL-Plants: tr|A0A0L9TNK9|A0A0L9TNK9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19933346..19935955) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAAGGGTGTACAAATAATTTCAAAACCGCGAGAAGCAGGAAAGAAAAATATAACAAAAAAAAAAAGAAAATCATCG TCACGTTCTGCTCGTTTAACGCGTGAAACCCTAATTAGGGTTTTCAGACTTGCTTCGTTTTCGGTGGAATCGATCGCAGC GCTGGATCCGTATCGTTTTCCTCCGTCGAGCGAACCCCCTTTCGCTCGATCGTTCAGCGATCTCGGAAGCATGTTCGGAT CGAGGGGGTAAGTCGATGAAACTTTTGATCCTTTTTTACTTCATTCCATTTTTCTTTATGTGTTCAATTTCGGATGTGTA TGGTTGGGTTGGGTTGGGTTGGTAGAAATATTCATTAGGTCCTAAGCTGTGAAATTAGTTTCAGTTTTCTCTGTTGATTT CGTGTGTATAGCCATATTGTTTTTTTTTTTGTGTGTAATTGATTTCAACCAATGATTCTGGCTGAGAAAAGTTTTAAAAC TTGTTAAAATTTGGAGTTTTGTTGGTTTTTTCCAATCTTGTGGTTGGGTTTTGTACTGTATTATACACAAACACACTGTG GTGTCTGTTTGGTTTTCAGTTAGGAAGTGCATTTGAAACATTGGAATTCGAGATCACGATTTCCAATGCACATTCAACCA ACGGAATCCACTTGTTGGGTTGAGTGAATGTGCTTTCACATTCACCCAACTGAAAACCAAATAGGCACCACAACGCTTTA TCATTGTTGGGAAAATATGGAAAATCTTCTGAGAGCTTTTTTAGTTTAGTGTTAGGGATGTGGCACTTGTAGCTTTTTCC TTTGTTTGCATTTTGTTTAGTTATGTGCTCTGTTTGATGTTATGTGCTTAGCTGGTGGACTGTCTTGGGTGTTTGAGTTG ATTGTGTCTCAAAAAAAAAAATCTTTGGTGGTTTTTTCTATTGATATAGGTGGTTCCTGTCTTGTTACTTTATTCTTTAT TTGTTTAGTTTTTGGGGTTTTGATGAATATGATAAATATGTCATTAGGAATTGAAATTAAGTCTAAGGGAAACGTGGGTT GGGTTTGGCTTTATTAACATGTTGAGTGGGGGATTTTGTTTTTTTTTCTGGGTATGGAAATTTGAAGGGCAATGTTGGGG AGCGGGGGGGTATCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAG CAGCGGACCAGGCAGCTTTCAACCTTATGGGTATGCTGGAGGCTTCCAGCCGCCTCCTCCCTTTCCAGTGGTTCGTCTCA GGGGGCTCCCGTTCAACTGCACAGATATTGACATTTTGAAATTCTTTGCTGGACTGACCATTGTGGATGTGTTGTTGGTC AACAAGAGTGGGCGGTTCTCAGGAGAGGCCTTTGTTGTCTTTCCAGGAGCAATGCAGGTTGAGTTTGCTTTGCAGAGGGA TCGGCAGAACATGGGTCGCAGATACGTGGAAGTGTTCAGGTGTAAGAAGCAGGATTATTACAATGCTGTTGCTGGTGAGG TCAGCTACGAAGGAATATATGATAATGATTACCATGGAAGCCCTCCCCCCTCTCGGTCCAAGAGGTTCAGTGATAAAGAA CAAATGGAATATACTGAGATCTTGAAGATGCGTGGACTTCCATTTGCAGTGACTAAATCTCAAATTGTTGATTTTTTTAA GGATTACAAGCTGATAGAAGACAGGGTACACATTGCATGTCGCCCTGATGGGAAAGCTACTGGTGAGGCATATGTGGAGT TTGTCTCTCCTGATGAGGCTAAGAGAGCAATGCCCAAGGATAAAATGATGATTGGATCAAGGTATGTGGAACTGTTTCCT TCCACACCAGATGAAGCTAGACGGGCTGAGTCAAGATCAAGGCAGTAATCTGAGATTTTTTGCCAGGGATTTTGTATCAT GTTCTAGGTCTTTAAACTGTTTCTTCCTTCTGGCGGTACTACACTGTTCTTAATTTTTAGATAACTGTACTTCAATTACT AGTTCTGTTTGGTGATTATATTTGAATAGAAAAGGATTTAGAATATGTTGCTTGGTACTGTGGGAGATAAAATTTGTCTA ATGCCCCAAAATTCCTCTCAGTCATGGCATGCTTTCCATGGTTTTAATATTTATGGGGGCTGTATTGGCCATCACTTGTA TGACCAAACTTATGTGTCTCGCTGCCAAAGTACTGCTTGGCTTCAATGGTAACTGCGCCATTTCCAGAGTTTGATTAACT GGGGTGTCTGTTGTGCTGGTTTTGAGTTACAGTTTTATTTTGGAATTTATATTTTCACTGCATTATCAAGCAAGTGATCT TTATTGTTATGTGAAAATTATTTCCTTTACTAGAATAATCGGATCAGTTTTTATGGGGATAAGTCATTCGATCTAATTTG ATCAAATTTCTTATTCTTCTGGTTCAATCAGGTTTTTTTAATTTTAATTTAATCTATTTCGTTGGTTGAAAATTTTAATT TTTTGAGATATAAGTTTTCAAATATAAAATAATTGAAAGTATTAGATGTTTATTGTATATAAGTCATAGGTCATGTAACC AAAAAGAAAGTCATAGGACAACTTTTGCTAGTAATAACGTTTATACTAGC
CDS sequence (LotjaGi4g1v0136000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGGGAGCGGGGGGGTATCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTT CGCAGTGAGCAGCGGACCAGGCAGCTTTCAACCTTATGGGTATGCTGGAGGCTTCCAGCCGCCTCCTCCCTTTCCAGTGG TTCGTCTCAGGGGGCTCCCGTTCAACTGCACAGATATTGACATTTTGAAATTCTTTGCTGGACTGACCATTGTGGATGTG TTGTTGGTCAACAAGAGTGGGCGGTTCTCAGGAGAGGCCTTTGTTGTCTTTCCAGGAGCAATGCAGGTTGAGTTTGCTTT GCAGAGGGATCGGCAGAACATGGGTCGCAGATACGTGGAAGTGTTCAGGTGTAAGAAGCAGGATTATTACAATGCTGTTG CTGGTGAGGTCAGCTACGAAGGAATATATGATAATGATTACCATGGAAGCCCTCCCCCCTCTCGGTCCAAGAGGTTCAGT GATAAAGAACAAATGGAATATACTGAGATCTTGAAGATGCGTGGACTTCCATTTGCAGTGACTAAATCTCAAATTGTTGA TTTTTTTAAGGATTACAAGCTGATAGAAGACAGGGTACACATTGCATGTCGCCCTGATGGGAAAGCTACTGGTGAGGCAT ATGTGGAGTTTGTCTCTCCTGATGAGGCTAAGAGAGCAATGCCCAAGGATAAAATGATGATTGGATCAAGGTATGTGGAA CTGTTTCCTTCCACACCAGATGAAGCTAGACGGGCTGAGTCAAGATCAAGGCAGTAA
Protein sequence (LotjaGi4g1v0136000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGPGSFQPYGYAGGFQPPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDV LLVNKSGRFSGEAFVVFPGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEVSYEGIYDNDYHGSPPPSRSKRFS DKEQMEYTEILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMPKDKMMIGSRYVE LFPSTPDEARRAESRSRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 34 | 31 | 1.5E-140 | – | |
| PANTHER | 4 | 34 | 31 | 1.5E-140 | – | |
| PANTHER | 34 | 257 | 224 | 1.5E-140 | – | |
| PANTHER | 34 | 257 | 224 | 1.5E-140 | – | |
| SUPERFAMILY | 43 | 131 | 89 | 1.61E-17 | ||
| Gene3D | 51 | 133 | 83 | 4.8E-22 | ||
| CDD | 53 | 122 | 70 | 6.06315E-24 | – | |
| SMART | 53 | 122 | 70 | 4.6E-5 | ||
| Pfam | 55 | 117 | 63 | 6.4E-5 | ||
| Gene3D | 151 | 258 | 108 | 5.6E-28 | ||
| SUPERFAMILY | 168 | 255 | 88 | 8.46E-21 | ||
| ProSiteProfiles | 169 | 246 | 78 | 9.661 | ||
| SMART | 170 | 242 | 73 | 3.0E-7 | ||
| CDD | 170 | 242 | 73 | 3.97711E-29 | – | |
| Pfam | 173 | 239 | 67 | 5.7E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0136000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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