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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0136000 |
| Transcript ID | LotjaGi4g1v0136000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heterogeneous nuclear ribonucleoprotein; TAIR: AT5G66010.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9Z2X1|HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F; TrEMBL-Plants: tr|V7CG36|V7CG36_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0136000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19933346..19935955) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAAGGGTGTACAAATAATTTCAAAACCGCGAGAAGCAGGAAAGAAAAATATAACAAAAAAAAAAAGAAAATCATCG TCACGTTCTGCTCGTTTAACGCGTGAAACCCTAATTAGGGTTTTCAGACTTGCTTCGTTTTCGGTGGAATCGATCGCAGC GCTGGATCCGTATCGTTTTCCTCCGTCGAGCGAACCCCCTTTCGCTCGATCGTTCAGCGATCTCGGAAGCATGTTCGGAT CGAGGGGGTAAGTCGATGAAACTTTTGATCCTTTTTTACTTCATTCCATTTTTCTTTATGTGTTCAATTTCGGATGTGTA TGGTTGGGTTGGGTTGGGTTGGTAGAAATATTCATTAGGTCCTAAGCTGTGAAATTAGTTTCAGTTTTCTCTGTTGATTT CGTGTGTATAGCCATATTGTTTTTTTTTTTGTGTGTAATTGATTTCAACCAATGATTCTGGCTGAGAAAAGTTTTAAAAC TTGTTAAAATTTGGAGTTTTGTTGGTTTTTTCCAATCTTGTGGTTGGGTTTTGTACTGTATTATACACAAACACACTGTG GTGTCTGTTTGGTTTTCAGTTAGGAAGTGCATTTGAAACATTGGAATTCGAGATCACGATTTCCAATGCACATTCAACCA ACGGAATCCACTTGTTGGGTTGAGTGAATGTGCTTTCACATTCACCCAACTGAAAACCAAATAGGCACCACAACGCTTTA TCATTGTTGGGAAAATATGGAAAATCTTCTGAGAGCTTTTTTAGTTTAGTGTTAGGGATGTGGCACTTGTAGCTTTTTCC TTTGTTTGCATTTTGTTTAGTTATGTGCTCTGTTTGATGTTATGTGCTTAGCTGGTGGACTGTCTTGGGTGTTTGAGTTG ATTGTGTCTCAAAAAAAAAAATCTTTGGTGGTTTTTTCTATTGATATAGGTGGTTCCTGTCTTGTTACTTTATTCTTTAT TTGTTTAGTTTTTGGGGTTTTGATGAATATGATAAATATGTCATTAGGAATTGAAATTAAGTCTAAGGGAAACGTGGGTT GGGTTTGGCTTTATTAACATGTTGAGTGGGGGATTTTGTTTTTTTTTCTGGGTATGGAAATTTGAAGGGCAATGTTGGGG AGCGGGGGGGTATCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAG CAGCGGACCAGGCAGCTTTCAACCTTATGGGTATGCTGGAGGCTTCCAGCCGCCTCCTCCCTTTCCAGTGGTTCGTCTCA GGGGGCTCCCGTTCAACTGCACAGATATTGACATTTTGAAATTCTTTGCTGGACTGACCATTGTGGATGTGTTGTTGGTC AACAAGAGTGGGCGGTTCTCAGGAGAGGCCTTTGTTGTCTTTCCAGGAGCAATGCAGGTTGAGTTTGCTTTGCAGAGGGA TCGGCAGAACATGGGTCGCAGATACGTGGAAGTGTTCAGGTGTAAGAAGCAGGATTATTACAATGCTGTTGCTGGTGAGG TCAGCTACGAAGGAATATATGATAATGATTACCATGGAAGCCCTCCCCCCTCTCGGTCCAAGAGGTTCAGTGATAAAGAA CAAATGGAATATACTGAGATCTTGAAGATGCGTGGACTTCCATTTGCAGTGACTAAATCTCAAATTGTTGATTTTTTTAA GGATTACAAGCTGATAGAAGACAGGGTACACATTGCATGTCGCCCTGATGGGAAAGCTACTGGTGAGGCATATGTGGAGT TTGTCTCTCCTGATGAGGCTAAGAGAGCAATGCCCAAGGATAAAATGATGATTGGATCAAGGTATGTGGAACTGTTTCCT TCCACACCAGATGAAGCTAGACGGGCTGAGTCAAGATCAAGGCAGTAATCTGAGATTTTTTGCCAGGGATTTTGTATCAT GTTCTAGGTCTTTAAACTGTTTCTTCCTTCTGGCGGTACTACACTGTTCTTAATTTTTAGATAACTGTACTTCAATTACT AGTTCTGTTTGGTGATTATATTTGAATAGAAAAGGATTTAGAATATGTTGCTTGGTACTGTGGGAGATAAAATTTGTCTA ATGCCCCAAAATTCCTCTCAGTCATGGCATGCTTTCCATGGTTTTAATATTTATGGGGGCTGTATTGGCCATCACTTGTA TGACCAAACTTATGTGTCTCGCTGCCAAAGTACTGCTTGGCTTCAATGGTAACTGCGCCATTTCCAGAGTTTGATTAACT GGGGTGTCTGTTGTGCTGGTTTTGAGTTACAGTTTTATTTTGGAATTTATATTTTCACTGCATTATCAAGCAAGTGATCT TTATTGTTATGTGAAAATTATTTCCTTTACTAGAATAATCGGATCAGTTTTTATGGGGATAAGTCATTCGATCTAATTTG ATCAAATTTCTTATTCTTCTGGTTCAATCAGGTTTTTTTAATTTTAATTTAATCTATTTCGTTGGTTGAAAATTTTAATT TTTTGAGATATAAGTTTTCAAATATAAAATAATTGAAAGTATTAGATGTTTATTGTATATAAGTCATAGGTCATGTAACC AAAAAGAAAGTCATAGGACAACTTTTGCTAGTAATAACGTTTATACTAGC
CDS sequence (LotjaGi4g1v0136000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGGATCGAGGGGGGCAATGTTGGGGAGCGGGGGGGTATCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAAT GATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGACCAGGCAGCTTTCAACCTTATGGGTATGCTGGAGGCTTCCAGC CGCCTCCTCCCTTTCCAGTGGTTCGTCTCAGGGGGCTCCCGTTCAACTGCACAGATATTGACATTTTGAAATTCTTTGCT GGACTGACCATTGTGGATGTGTTGTTGGTCAACAAGAGTGGGCGGTTCTCAGGAGAGGCCTTTGTTGTCTTTCCAGGAGC AATGCAGGTTGAGTTTGCTTTGCAGAGGGATCGGCAGAACATGGGTCGCAGATACGTGGAAGTGTTCAGGTGTAAGAAGC AGGATTATTACAATGCTGTTGCTGGTGAGGTCAGCTACGAAGGAATATATGATAATGATTACCATGGAAGCCCTCCCCCC TCTCGGTCCAAGAGGTTCAGTGATAAAGAACAAATGGAATATACTGAGATCTTGAAGATGCGTGGACTTCCATTTGCAGT GACTAAATCTCAAATTGTTGATTTTTTTAAGGATTACAAGCTGATAGAAGACAGGGTACACATTGCATGTCGCCCTGATG GGAAAGCTACTGGTGAGGCATATGTGGAGTTTGTCTCTCCTGATGAGGCTAAGAGAGCAATGCCCAAGGATAAAATGATG ATTGGATCAAGGTATGTGGAACTGTTTCCTTCCACACCAGATGAAGCTAGACGGGCTGAGTCAAGATCAAGGCAGTAA
Protein sequence (LotjaGi4g1v0136000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGSRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGPGSFQPYGYAGGFQPPPPFPVVRLRGLPFNCTDIDILKFFA GLTIVDVLLVNKSGRFSGEAFVVFPGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEVSYEGIYDNDYHGSPPP SRSKRFSDKEQMEYTEILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMPKDKMM IGSRYVELFPSTPDEARRAESRSRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 41 | 41 | 5.4E-142 | – | |
| PANTHER | 1 | 41 | 41 | 5.4E-142 | – | |
| PANTHER | 40 | 264 | 225 | 5.4E-142 | – | |
| PANTHER | 40 | 264 | 225 | 5.4E-142 | – | |
| SUPERFAMILY | 50 | 138 | 89 | 1.75E-17 | ||
| Gene3D | 58 | 140 | 83 | 5.1E-22 | ||
| CDD | 60 | 129 | 70 | 7.88907E-24 | – | |
| SMART | 60 | 129 | 70 | 4.6E-5 | ||
| Pfam | 62 | 124 | 63 | 6.7E-5 | ||
| Gene3D | 158 | 265 | 108 | 6.0E-28 | ||
| SUPERFAMILY | 175 | 262 | 88 | 9.0E-21 | ||
| ProSiteProfiles | 176 | 253 | 78 | 9.661 | ||
| SMART | 177 | 249 | 73 | 3.0E-7 | ||
| CDD | 177 | 249 | 73 | 5.34826E-29 | – | |
| Pfam | 180 | 246 | 67 | 6.0E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0136000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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