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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0136900 |
| Transcript ID | LotjaGi4g1v0136900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT1G20610.1 Cyclin B2;3; Swiss-Prot: sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2; TrEMBL-Plants: tr|A0A151THM7|A0A151THM7_CAJCA G2/mitotic-specific cyclin-1; Found in the gene: LotjaGi4g1v0136900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:20082391..20085983) extracted from Lotus japonicus Gifu genome v1.2.
CTACAGTGTTTGCATATATACTCTTTTAAGACTGGGTTACTGAGAATTCTTATTCTCTCTTGAGTGGGTGGTGGGAATTT TGGGTTTTCTTTGCAATTTTTCTCTGTGTGTGTGTGTGAAAAAATGGTGAATTTGAAGGAGAACAATTCCAAGGCGACCA CCATGCCCAAAAATCTCCAAGGTACAAACTTTCTGGGATTAAAATAAATTCCAATGTTGATTATGGCTTATACACGTGAA GATTTAACATGGGTTGGTTTTTGGTTTCCTCTTTTCTTTTCTTTTTTTTTCTTGTTTGAATTGTAGGAGGGGTGAATCGA ATGGGTACCAAAGCGGCTGGACAAAATCGGAGAGCTTTGAGCGCTATTAATGAAAATCTGGTTCAAGGTCGATCTTACCC TTGCGTTGTCAATAACAAGAGGGCGTTGTCTGGGTAATTCTCTTCTCTTATCTTCTCTTTGTATTTCTTATGACTCTAGT TCATTCTTTACGGTCTCTTTAGCGTTAATTTTGTGTCTGATTTTCTTTTTGTGATTTTTCCAGTAAGCATGAGATTGTTG AAAAGAAGCAGGCTGATCTAGCGCATCGACCCATCACAAGGTACAAACTTTGACTGCAATTTTTCCTTTTTTCTTTTTTG TTGTTAGGTAACAAGATGTTTGAATTGTAGATACAATTTTGAAATTGAATGTCCTGGCTATTTATGTTCAAAGGAAATTT TGATGTTAGGGTGCTGAATGTGTATTTAAATTCTGGTATATAAATTGGGGGTAGGAAATTTTGGTGTTTTCAAACTAATA TTAAGGTGTTGATTGGTGTTTATTTAAATTCTGCTGAATGGGGGTAAGGAATTGTGTAAGCATTGGTGCCTTTGGTGTTT CTTTAAATTCTGGTAATTGGGGGAAGGAATAATAAAAGCAAAGCTGCTGATTGGTGTTTATTCAAATTTTGGTGATTGGA GGAAGGAACTAAAAGCCTTGTGCTTTCTTTTCTTCTGGCTATTACCCACAACCTACATGGTTCTTGTTCTTTCTTTTCTT CTAGTTATTGCCCACAATCTACATGGTAATTGTAGAATTATTGAAACTTTATGTATCACCCACAATCTACATGGTTCATC AATTGAAGAATTATTGAAACTTTATGTATTGTTTTGTAGGAGGTTTGCTGCACAATTGGCTAGCGCTAAAATATCTTTAG CTGAGGTGTGTCCTCTTTCTCTTTTTAATTTGGTGATATTGATGTGTAATCCTTCACTGTTAGACTAAAATTTTGAATGG TGTGGTTTCGAATAGATAACCAAGAAGGGATCTGCTGAGTCCAAGTCCATCAATGATGAACCAGTGACAATGTCTTTGGA GAAAACTAAAACATTGCATAGTGGTCCAGATCCTATGGTATTTGTTTGTGTTTGAGTCCTTTTTGTTTTCTCTTGCATCT ATTTTAATGTTTAATTTGTGTGACCTTGAACTCTTTAGGAAGAAGTTGAGATGGAGGACATAAAAGAAGAGTCTATTATG GACATTGATGGTTGTGATGCAGATAACCCTCGTGAAGCAGTGGAGTATATTGAGGATATCTATTCTTTTTACAGAAAAAT TGAGGTATCTGATTGTGACAATTATTTTACTTGAAGTGGGAAACTGTTAGAAGTTCTAGTTGGACATTAACTTCAAATTG AATGCGCTTCTAGTTTGCATTGCCAAAATCTTTCTAATACCCTAATTTAAGTTATAGATTTTGAATAACTATAAGATATA TCCATCTATTGATTTTGAACTTCAAATTGAATGCGCTTCTAATTTTCATTGTCCAAATCTTTTCAACACCCTAATTTAAG TTATGGATTGCGAATAATTATAAGATATATGGATCTCTATCGATTCCAATTTAAGGATTATAACGTGGAAAGTCTTGAGA ACAAGAATAGGATACCAAATATGTTTTGATACCATTAGTTATGACAAAAAATGATTTTTATGATTACTGATAGCATTAGC TTCCTGCAGACCATTAGCCGTGTTTCACCAAATTATATGGAGCAACAGATGGACATTAACCCAAATATGAGGGCTATACT AATTGACTGGCTTATTGAGGTATTAAAATAAATGTTGTTCCCTACTCTATGGCCTAGTTCAAATTATTGATTATGTTTCC ATTTAGTATCTCATTCTACTATTAATTACGTGTTTCGACAATCAGGTGCATGACAAATTCGATCTCCTGCAAGAGACATT GTTTCTTACAATCAATCTCATAGACAGATTCTTGGCAAAACAAGAATTGGTGAGAAACAAGCTTCAATTGGTTGGTCTAG TTGCCATGCTTTTGGCATGCAAATATGAGGAGGTTTCTGTGCCTATAGTTTCGGATATGGTGCAACTCTCAGACAAGGCA TACACAAGGAGCCAAGTGCTAGAAATGGTAACATCTTATTTTCTTATCTATATTATGTCCCTTTCACATTCGTCAAACTG ACTTATCTGAGATTTTTTGAAATACTGCAGGAGAAGATGATGCTAAACACATTGCAGTATAACATGTCGGTGCCAACTGT GTATGTTTTTCTGAGAAGATTTCTGAAGGCAGCTCAAGCAGATAAAACAGTTAGTATATATTTCTTTCAATCATTTCCAA GCATATACTAACTATGTTATTATATCTAGGATTAAATGTGTGTGTGTAAATTTTGTTTAGGGTTTAAGGTTTAAACATAA ACATCTAATCCAATTGATTACACAAACATCCAAAGTCAGACTATTTTACACTAACATGAAAACCATACTCATTTCTTGCT AGGAATTCCCAAGCATAACTAGAAATTTATAGTTACTCATTTATTGCTTTACTTTCCCATTGAACAGCTTGAGCTGCTAG TTTTCTTCTTGGTGGAGCTATCTCTGGTGGAATATGAGATGTTGAAATTCCCACCATCTATGGTGGCTGCTGCTGCTGTC TACACAGCTCAATGCACTGTCAATGGCTTCAAAGAATGGAGCAAGACTTGTGAATGGCACACAAAGTACTCAGAGGCTCA GCTATTGTAAGCACATTTTCATTTCTGAACTCAATTATCCACTAGTTTTGACATGTTGTTAAATTCTGATTTTTTTTTTT ATCTTCTTTCTGACTTGTAGAGAGTGCTCTACTTTGATAGTTGGGTTCCACCAGAGGGCTAGGTTAGGGAAACTCACTGG AGTGTATAGGAAATACTGCTCATCAAAATTCGGCTTTGCTGCGAAATGTTATAACCCGGCTTATTTTCTTCTGGAGAACG AATTGTGAGCGGCAGGGCCATGTATAGCTACTGGCTATACTTTCATAAATGTGGTTGGGATTTTTAAAATGAACATAAGA GCAACTTGGGTTGCAGTTGGCACTGAAGTTGTTTATTTCTGAGTCAGGCACTTATCTTTATGTCAAGTTACTTTACCTTC TCATTTATTTTTGGTCATTTCCCTTTCTCAAGGGGAAATATATTTAGAACATCTAAGTGTTTTTGGTTCTCATTGAACAA AATATTATGGAAACTATGATACATTTTGAACCATTTGATTCTTAGTATTTGTTTATTTTTCTTGATTTCATAT
CDS sequence (LotjaGi4g1v0136900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAATTTGAAGGAGAACAATTCCAAGGCGACCACCATGCCCAAAAATCTCCAAGGAGGGGTGAATCGAATGGGTAC CAAAGCGGCTGGACAAAATCGGAGAGCTTTGAGCGCTATTAATGAAAATCTGGTTCAAGGTCGATCTTACCCTTGCGTTG TCAATAACAAGAGGGCGTTGTCTGGTAAGCATGAGATTGTTGAAAAGAAGCAGGCTGATCTAGCGCATCGACCCATCACA AGGAGGTTTGCTGCACAATTGGCTAGCGCTAAAATATCTTTAGCTGAGATAACCAAGAAGGGATCTGCTGAGTCCAAGTC CATCAATGATGAACCAGTGACAATGTCTTTGGAGAAAACTAAAACATTGCATAGTGGTCCAGATCCTATGGAAGAAGTTG AGATGGAGGACATAAAAGAAGAGTCTATTATGGACATTGATGGTTGTGATGCAGATAACCCTCGTGAAGCAGTGGAGTAT ATTGAGGATATCTATTCTTTTTACAGAAAAATTGAGACCATTAGCCGTGTTTCACCAAATTATATGGAGCAACAGATGGA CATTAACCCAAATATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCATGACAAATTCGATCTCCTGCAAGAGACAT TGTTTCTTACAATCAATCTCATAGACAGATTCTTGGCAAAACAAGAATTGGTGAGAAACAAGCTTCAATTGGTTGGTCTA GTTGCCATGCTTTTGGCATGCAAATATGAGGAGGTTTCTGTGCCTATAGTTTCGGATATGGTGCAACTCTCAGACAAGGC ATACACAAGGAGCCAAGTGCTAGAAATGGAGAAGATGATGCTAAACACATTGCAGTATAACATGTCGGTGCCAACTGTGT ATGTTTTTCTGAGAAGATTTCTGAAGGCAGCTCAAGCAGATAAAACACTTGAGCTGCTAGTTTTCTTCTTGGTGGAGCTA TCTCTGGTGGAATATGAGATGTTGAAATTCCCACCATCTATGGTGGCTGCTGCTGCTGTCTACACAGCTCAATGCACTGT CAATGGCTTCAAAGAATGGAGCAAGACTTGTGAATGGCACACAAAGTACTCAGAGGCTCAGCTATTAGAGTGCTCTACTT TGATAGTTGGGTTCCACCAGAGGGCTAGGTTAGGGAAACTCACTGGAGTGTATAGGAAATACTGCTCATCAAAATTCGGC TTTGCTGCGAAATGTTATAACCCGGCTTATTTTCTTCTGGAGAACGAATTGTGA
Protein sequence (LotjaGi4g1v0136900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNLKENNSKATTMPKNLQGGVNRMGTKAAGQNRRALSAINENLVQGRSYPCVVNNKRALSGKHEIVEKKQADLAHRPIT RRFAAQLASAKISLAEITKKGSAESKSINDEPVTMSLEKTKTLHSGPDPMEEVEMEDIKEESIMDIDGCDADNPREAVEY IEDIYSFYRKIETISRVSPNYMEQQMDINPNMRAILIDWLIEVHDKFDLLQETLFLTINLIDRFLAKQELVRNKLQLVGL VAMLLACKYEEVSVPIVSDMVQLSDKAYTRSQVLEMEKMMLNTLQYNMSVPTVYVFLRRFLKAAQADKTLELLVFFLVEL SLVEYEMLKFPPSMVAAAAVYTAQCTVNGFKEWSKTCEWHTKYSEAQLLECSTLIVGFHQRARLGKLTGVYRKYCSSKFG FAAKCYNPAYFLLENEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PIRSF | 2 | 416 | 415 | 1.5E-122 | – | |
| PANTHER | 14 | 412 | 399 | 2.2E-179 | ||
| PANTHER | 14 | 412 | 399 | 2.2E-179 | – | |
| SUPERFAMILY | 152 | 288 | 137 | 3.4E-47 | ||
| Pfam | 163 | 289 | 127 | 5.4E-44 | ||
| Gene3D | 165 | 400 | 236 | 1.8E-88 | – | |
| Gene3D | 177 | 289 | 113 | 1.8E-88 | – | |
| CDD | 192 | 281 | 90 | 9.45665E-23 | ||
| ProSitePatterns | 193 | 224 | 32 | - | ||
| SMART | 198 | 282 | 85 | 1.2E-25 | ||
| CDD | 289 | 376 | 88 | 3.98294E-16 | ||
| SUPERFAMILY | 290 | 407 | 118 | 4.97E-38 | ||
| Pfam | 291 | 405 | 115 | 2.5E-33 | ||
| SMART | 291 | 408 | 118 | 4.0E-35 | ||
| SMART | 295 | 377 | 83 | 1.9E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0136900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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