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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0152400 |
| Transcript ID | LotjaGi4g1v0152400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT-rich interactive domain protein; TAIR: AT5G04110.1 DNA GYRASE B3; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|A0A072U1T4|A0A072U1T4_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0152400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:25156055..25157417) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTTCCCGATCTGCAAGGATTTAAGGATCTCCAGTTCTCCTGTGACGACATCGATTGGCCTGGACGGCGACTACATAG GCATTTCTACTTTGAGAAGTTTTCCTTTGGAGGAATAACTAGTCTTGAAAATATGGTAAGGTCAAAAGATCCTGCTTTGG AACCTTGCTATAAGAACATATCCTATCACAGACATCATAATCAAATGCACGAAATTCCCGCACTTTCCAATTCTTGTGCC CAAATTCCCCAGGTACATATAGTGTATATGAAGCATTGAATAACCTATCATCATAAATCTCTAGAAAGCTTAGAAATTCA TGCATTCTTTTACATGTATCGTGATAAAAAAACTACTTTTTTTCAGAGAAAGAGGAAAGTAGACCAATATATGAATAGTG GTAAGTTTATTACTACTTTTGAACTCAGTACAAAGACGTATGGCAAACCAAATGCCATCAATCAGTGTAGAAGCCAAAAC TCTTACCCTACAACTTTGCAAGTTTCCAAAGGAAAGCATGTTATTTCAGAAGAAACACAAGAGTATGCTGCTTTCCCTAC TCTTAATGAGAGAATAGAACATTGTATTACATGTCAGGAAGACTATTCCCATCTAAGTGGCTCAGATGATTCTTATGAAG AGTTATACTTAGAGAAACAAAGGAATTTAAAAAGCCTGCATAAGGATTTAATGTCTAGCGATAGTTGTTCTCGTAGTTAC GAGACATTGACAAAGTCATTAAATGCTGAAGATTTTGTCAATTCAGTTGAGATTTCACATTCATCATGCTTGAAAAAAGA AGACAAGGATCTCAATCCAGCGCTGAAGAAATTCTTGGCACCCAAATGTAACCATCTTCTAAGACCAATTATTCCCATTG GTCCTAGGTTTCAAGTGGAAGTTCCAAAATGGGATGTCACAAGAAACACTCGAAATAGTGATGAAGATTTGAAATGGCTG GGTACTCAAATTTTCTCAGCGTCTAATATTCCCCAAATTAATACAGAAGTTATTGGGAAAAAGGAGGATGGAGTTCCGGG GGGGGATGGACCAACACGCCCTGACTTTCCCGGCTAAAGTGAGGCTGGCGGGTTGACTTCTTGACGGAATGAATAGGAGT TGAACATTGCAATCTGTCTTATCACAATTGGATTAGACGAGAAGATTGATGACCTGAGAGATGTTTCTATGTCATGGGTA TTGGAAGAATAAAAGGAATTTAACTTTCTTGTAAAATAATTTTTTCTTTCAAGAGAATTTTTTTAAGATCACCATGGAAC GTTGTGTGCGTAGATGACTATTATAACTACTGGAATCACTTGTGCCCTGCATGGATGAATTTTGTTATTCAAAATCTAAA TTT
CDS sequence (LotjaGi4g1v0152400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAGGTCAAAAGATCCTGCTTTGGAACCTTGCTATAAGAACATATCCTATCACAGACATCATAATCAAATGCACGA AATTCCCGCACTTTCCAATTCTTGTGCCCAAATTCCCCAGAGAAAGAGGAAAGTAGACCAATATATGAATAGTGGTAAGT TTATTACTACTTTTGAACTCAGTACAAAGACGTATGGCAAACCAAATGCCATCAATCAGTGTAGAAGCCAAAACTCTTAC CCTACAACTTTGCAAGTTTCCAAAGGAAAGCATGTTATTTCAGAAGAAACACAAGAGTATGCTGCTTTCCCTACTCTTAA TGAGAGAATAGAACATTGTATTACATGTCAGGAAGACTATTCCCATCTAAGTGGCTCAGATGATTCTTATGAAGAGTTAT ACTTAGAGAAACAAAGGAATTTAAAAAGCCTGCATAAGGATTTAATGTCTAGCGATAGTTGTTCTCGTAGTTACGAGACA TTGACAAAGTCATTAAATGCTGAAGATTTTGTCAATTCAGTTGAGATTTCACATTCATCATGCTTGAAAAAAGAAGACAA GGATCTCAATCCAGCGCTGAAGAAATTCTTGGCACCCAAATGTAACCATCTTCTAAGACCAATTATTCCCATTGGTCCTA GGTTTCAAGTGGAAGTTCCAAAATGGGATGTCACAAGAAACACTCGAAATAGTGATGAAGATTTGAAATGGCTGGGTACT CAAATTTTCTCAGCGTCTAATATTCCCCAAATTAATACAGAAGTTATTGGGAAAAAGGAGGATGGAGTTCCGGGGGGGGA TGGACCAACACGCCCTGACTTTCCCGGCTAA
Protein sequence (LotjaGi4g1v0152400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRSKDPALEPCYKNISYHRHHNQMHEIPALSNSCAQIPQRKRKVDQYMNSGKFITTFELSTKTYGKPNAINQCRSQNSY PTTLQVSKGKHVISEETQEYAAFPTLNERIEHCITCQEDYSHLSGSDDSYEELYLEKQRNLKSLHKDLMSSDSCSRSYET LTKSLNAEDFVNSVEISHSSCLKKEDKDLNPALKKFLAPKCNHLLRPIIPIGPRFQVEVPKWDVTRNTRNSDEDLKWLGT QIFSASNIPQINTEVIGKKEDGVPGGDGPTRPDFPG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 99 | 258 | 160 | 8.0E-22 | – | |
| PANTHER | 99 | 258 | 160 | 8.0E-22 | – | |
| MobiDBLite | 257 | 276 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0152400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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