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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0161600 |
| Transcript ID | LotjaGi4g1v0161600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-like protein; TAIR: AT1G70210.1 CYCLIN D1;1; Swiss-Prot: sp|P42751|CCD11_ARATH Cyclin-D1-1; TrEMBL-Plants: tr|A0A0L9TCK3|A0A0L9TCK3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0161600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:29504303..29508001) extracted from Lotus japonicus Gifu genome v1.2.
AACGAAACGGATGCAGAGAAGCTTCAAACCAATACAATATCTCCCCCACCAACCAACCACAATCCTCCACGCTCAAAACC GTCACCACCCATTCTCTCTCTTTCTCTCTCATGTGGCAACACACATAATGAATGAGTAACCGCCACTGGCAATCCTCATG CCGCTACTTTCTGACTACGACCTCCTCTGCGGCGAGGAAGCCTCCGGGATCCTCACCGTAGAGTCACCGGAATGCTCCTC CGACTTCTTCGATTTCTCTCCGCCGTCACCGTCGCCGTCGTCCACGGAGGAGGAGTCGATCGCCGTTTTCATTGAGCACG AGCGCAACTTCGTTCCTGGATTCGACTATCTCTCAAGATTCCAATCTCGCTCCCTCGATCCTGACGCAAGAGAAGAATCT GTTACATGGATTCTCAAGGTAATTATATATAAGCAAGTAAAACAAAAACAAACTCACTCGCTCGATGAACTAACTGCTCC CTGCTAAAATGCGCCTTTGCTGTTGTGTAAGTAACTGTTTTTCCGTTACGGCATTAACGGACGCTGAGGTTAACGACTTA AGAGACTTCAACCAGATTGGTGATTCATTACATGTTTGAATCAATTTAGACTTTAAAATCAATTAAGAAATTGTGTAAAT ATTTACAAACAAAGTGATTGTGGGATTTGCAGGTACACGCTTACTATGGGTTTGGGCCATTGACGGCGTACCTTTCCGTC AATTATATGGATCGGTTTTTGGATTCTCGCCATTTGCCGGTGAGCACTTGTTTCTAAATACGCAGGGGAAAATCGGTTGG TGATTATTATCAGCTATGATTCACCCTCATTTAATCAGCACTTTCACTTTTGGAATAATGATACGTTCACCTTTCACTTT TCCTTTATCTCATTTCAACATATTTATATTAATATTTCTGTCTGCATTTGTTGTCTAATAACAAATTATATTACTTATTT CACCAATTTCTATTCCTATTTACCTAAGGTGAAGGTGAAAATAAAATGTCCACACACTATTATTTTTCACTTTTTAACTA TAAGCATGTTTGGATGTAAACAAACAAGTATTTGTGGGAGCTTTTTAAATATTTTTTAGTAGATAAGTTCTAATGTGCTC TATTTTCTTTCAATTATATCTCATATTACGTTTTTGATATTATTTTTTTACATTCCATTTACCCTTACCGTGGGGGTAGG CGTGAATGAAACTAGATTGAATTATTATTTCCAATGCTCTCATTTCATGTGCGGCGGTAATTATGTTTATCTATTCGAAC GTGAAAAACTTTTAAATACTTTCACCAATAAATACTCACAATTTCTTAAGCTCTATTTGTTCTCTTTATATACGTGAGAG ATTTATAGTATAATTCAATACTCGTATTTATTCTAGAAACTAGAAAGTGTGAAGAAAGTATTACTAGTATTAATTGCCTA TAAAAAAAAATTACTAGTATTAATTGAGATATTAGAATCATTATTTATGATGGTGATGATGAAAATGACTTTTTCCATTT AATATTTGATAAACAGCAAACAAATGGGTGGCCTATGCAACTTATATCTGTTGCATGTTTGTCCTTAGCAGCAAAGATGG AGGAACCCCTGGTTCCCTCTCTCTTGGACCTTCAGGTATAAATTATAGTTGTATGAAAATTAACAGATATTTATGATTCA AAATTTAAAACTCCTTTTGTTGCATATCTACATGTCACAACGTCATTCATAATTATGAATAAAATTGCAGGTAGAAGGTG CCAAATACATATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTATTGGATGCCTTGGATTGGAGGCTTAGATCA GTAACCCCTCTTAGCTTCCTCGGTTTCTTTGCCTTCAAGCTTGATTCTACTGGAAAGTTTACTGGATTTCTCATTTCACG GGCTACAGAAATCATCTTATCTAATATCCATGGTATAAAATTCCGTACAGATTATGTACACTTTACTTACTTTATATATA TACCATTGCTTATGAAAAAAAATTTACACTTTACTTTTTAATTTACAGAAAAAATCTTGTAACTTGTAAACCAACTTTTT ATTAATGGACGATAACCAAAACCAATTTGTATGACCGTTAATATCTTAATGCTAGAAATAATAGTAGTTGAGATGTTGAT TAGTAGTGAAGGTATACCGTATATATGCATTGTGAGTTGCTATTGAGTTTCCTGATTGGATATTAATTTGTCCGCAGACG TTAGCTTTCTTGCTTACAGGTCATCATGTATTGCCGCCGCGGCCATACTCTCTGCATCTAATGAAATTCCTGAGTGGTCT TTTGTTAAACCTGAGCATGCTGAGTCATGGTGCCAGGGTCTAAGAAAAGTAAGCATATATATGTAGTATGGGAAAATTAA ATAAGATGAAGTGTTTATGTATTTGTTTGAAATTGGCATTTATCGATCTGGTTTCCAAAGCACATGTATCTGATTATTGC AGGAAAAAATTATAGTGTGCTACAAGTTGATACAAGAGCTTATTGTGATTAACCACAGCAGCGGGAGGACCCCTAAAGTG TTGCCACAGCTTGGAGTAACAACTCGGACCCGGAGGTGGTCATGTATCTCATCACTGTCTTCGTCTTCGTCTTCCTCTTC CTCTTCATCGTCTTTCTTATTGTCCAATAAAAGAAGGAAATCAAATAACTGTTTGTGCATAGATGATGATGACAGATGAA GCTGCGAGTGAAGAGAAAAAAGAAAAATAATAAAATTTGAAGAAGGGAAGAAATAAGGTGGGCCATGCTGTCTGAAACCT CAACATTTATTTTATTGATGGAGGGTGTTAATTATTACTACTAGTAGAATACGTATATACTAGATATAATACCCGTGCGT TGCACGGGTTTATTTATACTCTTTTTTTAATATAGTATAAAAATTATTATAGTGCAACTAAATTACTAAATATTAAAAAT ATTTTTTTTATAAATATAATAAAAAATCGTGTTGAGACATAATCAAAATAATATTTTTGGTGTATTAAATTATTCGTACT AAAGTTCTCTATATGTAAATAATTAATATCACTTAAAATTAGTAATTAATATTTAATCATTAGAATTTAATTAATTTTAA ATTTTTTGCTTGTAACCTATTCTATTGATTTGAGTTCTTTGTTTTTAAGTTTATTATTGTGATTTCAATTGCAGAGTGAT TGATTTATCATATATCCGGTTGTAAACATTGATACTCAGTTAAGGGGAATATTGTCCCCAGATGTTATTATTTTTTTTAA TCATAACTAATCCTTAAAAATCAATTTAATAATTTATTTATTCAATAATTCAAAAAGCTCTTAAGTGAATTTGAAATATT TTAAATCAAGTAATAAGGTTTTAATATAAGTTATAATAACACATTTTTATCCTTTTTTTTATCACCAATGAAATAATTTT AACTTTAAAAATTATAATAAGTTATCATTTTATTATCATAAAATATTATTTAGTAAATTTAAATTTATTCAAATTTTATT ATAATTATTTTTCTCTGTTAAATTTCCTCAACTTATTTTTACTTCTATATAATAGATCAAAAATTATATTTAAAGAATAT TTTTCAAATAATACACACATTCATATAGTAATAATAAATACCTTATAAATATTTTTTTTATTTAATTTTCAACTTTTTTT TCGACATTATATATTAAAA
CDS sequence (LotjaGi4g1v0161600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGCTACTTTCTGACTACGACCTCCTCTGCGGCGAGGAAGCCTCCGGGATCCTCACCGTAGAGTCACCGGAATGCTC CTCCGACTTCTTCGATTTCTCTCCGCCGTCACCGTCGCCGTCGTCCACGGAGGAGGAGTCGATCGCCGTTTTCATTGAGC ACGAGCGCAACTTCGTTCCTGGATTCGACTATCTCTCAAGATTCCAATCTCGCTCCCTCGATCCTGACGCAAGAGAAGAA TCTGTTACATGGATTCTCAAGGTACACGCTTACTATGGGTTTGGGCCATTGACGGCGTACCTTTCCGTCAATTATATGGA TCGGTTTTTGGATTCTCGCCATTTGCCGCAAACAAATGGGTGGCCTATGCAACTTATATCTGTTGCATGTTTGTCCTTAG CAGCAAAGATGGAGGAACCCCTGGTTCCCTCTCTCTTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAGCCGAGA ACAATTCGTAGGATGGAGCTACTTGTATTGGATGCCTTGGATTGGAGGCTTAGATCAGTAACCCCTCTTAGCTTCCTCGG TTTCTTTGCCTTCAAGCTTGATTCTACTGGAAAGTTTACTGGATTTCTCATTTCACGGGCTACAGAAATCATCTTATCTA ATATCCATGACGTTAGCTTTCTTGCTTACAGGTCATCATGTATTGCCGCCGCGGCCATACTCTCTGCATCTAATGAAATT CCTGAGTGGTCTTTTGTTAAACCTGAGCATGCTGAGTCATGGTGCCAGGGTCTAAGAAAAGAAAAAATTATAGTGTGCTA CAAGTTGATACAAGAGCTTATTGTGATTAACCACAGCAGCGGGAGGACCCCTAAAGTGTTGCCACAGCTTGGAGTAACAA CTCGGACCCGGAGGTGGTCATGTATCTCATCACTGTCTTCGTCTTCGTCTTCCTCTTCCTCTTCATCGTCTTTCTTATTG TCCAATAAAAGAAGGAAATCAAATAACTGTTTGTGCATAGATGATGATGACAGATGA
Protein sequence (LotjaGi4g1v0161600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLLSDYDLLCGEEASGILTVESPECSSDFFDFSPPSPSPSSTEEESIAVFIEHERNFVPGFDYLSRFQSRSLDPDAREE SVTWILKVHAYYGFGPLTAYLSVNYMDRFLDSRHLPQTNGWPMQLISVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPR TIRRMELLVLDALDWRLRSVTPLSFLGFFAFKLDSTGKFTGFLISRATEIILSNIHDVSFLAYRSSCIAAAAILSASNEI PEWSFVKPEHAESWCQGLRKEKIIVCYKLIQELIVINHSSGRTPKVLPQLGVTTRTRRWSCISSLSSSSSSSSSSSSFLL SNKRRKSNNCLCIDDDDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 314 | 309 | 2.2E-136 | ||
| PANTHER | 6 | 314 | 309 | 2.2E-136 | – | |
| SUPERFAMILY | 44 | 177 | 134 | 2.13E-35 | ||
| Pfam | 48 | 177 | 130 | 7.8E-30 | ||
| Gene3D | 50 | 266 | 217 | 3.0E-46 | – | |
| Gene3D | 61 | 178 | 118 | 3.0E-46 | – | |
| ProSitePatterns | 78 | 109 | 32 | - | ||
| CDD | 82 | 170 | 89 | 5.60612E-16 | ||
| SMART | 83 | 171 | 89 | 2.1E-18 | ||
| SUPERFAMILY | 162 | 275 | 114 | 2.04E-5 | ||
| Pfam | 180 | 288 | 109 | 4.6E-13 | ||
| SMART | 180 | 313 | 134 | 3.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0161600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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