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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0161600 |
| Transcript ID | LotjaGi4g1v0161600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-like protein; TAIR: AT1G70210.1 CYCLIN D1;1; Swiss-Prot: sp|P42751|CCD11_ARATH Cyclin-D1-1; TrEMBL-Plants: tr|A0A151UD24|A0A151UD24_CAJCA Cyclin-D1-1; Found in the gene: LotjaGi4g1v0161600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:29504446..29506697) extracted from Lotus japonicus Gifu genome v1.2.
CACTGGCAATCCTCATGCCGCTACTTTCTGACTACGACCTCCTCTGCGGCGAGGAAGCCTCCGGGATCCTCACCGTAGAG TCACCGGAATGCTCCTCCGACTTCTTCGATTTCTCTCCGCCGTCACCGTCGCCGTCGTCCACGGAGGAGGAGTCGATCGC CGTTTTCATTGAGCACGAGCGCAACTTCGTTCCTGGATTCGACTATCTCTCAAGATTCCAATCTCGCTCCCTCGATCCTG ACGCAAGAGAAGAATCTGTTACATGGATTCTCAAGGTAATTATATATAAGCAAGTAAAACAAAAACAAACTCACTCGCTC GATGAACTAACTGCTCCCTGCTAAAATGCGCCTTTGCTGTTGTGTAAGTAACTGTTTTTCCGTTACGGCATTAACGGACG CTGAGGTTAACGACTTAAGAGACTTCAACCAGATTGGTGATTCATTACATGTTTGAATCAATTTAGACTTTAAAATCAAT TAAGAAATTGTGTAAATATTTACAAACAAAGTGATTGTGGGATTTGCAGGTACACGCTTACTATGGGTTTGGGCCATTGA CGGCGTACCTTTCCGTCAATTATATGGATCGGTTTTTGGATTCTCGCCATTTGCCGGTGAGCACTTGTTTCTAAATACGC AGGGGAAAATCGGTTGGTGATTATTATCAGCTATGATTCACCCTCATTTAATCAGCACTTTCACTTTTGGAATAATGATA CGTTCACCTTTCACTTTTCCTTTATCTCATTTCAACATATTTATATTAATATTTCTGTCTGCATTTGTTGTCTAATAACA AATTATATTACTTATTTCACCAATTTCTATTCCTATTTACCTAAGGTGAAGGTGAAAATAAAATGTCCACACACTATTAT TTTTCACTTTTTAACTATAAGCATGTTTGGATGTAAACAAACAAGTATTTGTGGGAGCTTTTTAAATATTTTTTAGTAGA TAAGTTCTAATGTGCTCTATTTTCTTTCAATTATATCTCATATTACGTTTTTGATATTATTTTTTTACATTCCATTTACC CTTACCGTGGGGGTAGGCGTGAATGAAACTAGATTGAATTATTATTTCCAATGCTCTCATTTCATGTGCGGCGGTAATTA TGTTTATCTATTCGAACGTGAAAAACTTTTAAATACTTTCACCAATAAATACTCACAATTTCTTAAGCTCTATTTGTTCT CTTTATATACGTGAGAGATTTATAGTATAATTCAATACTCGTATTTATTCTAGAAACTAGAAAGTGTGAAGAAAGTATTA CTAGTATTAATTGCCTATAAAAAAAAATTACTAGTATTAATTGAGATATTAGAATCATTATTTATGATGGTGATGATGAA AATGACTTTTTCCATTTAATATTTGATAAACAGCAAACAAATGGGTGGCCTATGCAACTTATATCTGTTGCATGTTTGTC CTTAGCAGCAAAGATGGAGGAACCCCTGGTTCCCTCTCTCTTGGACCTTCAGGTATAAATTATAGTTGTATGAAAATTAA CAGATATTTATGATTCAAAATTTAAAACTCCTTTTGTTGCATATCTACATGTCACAACGTCATTCATAATTATGAATAAA ATTGCAGGTAGAAGGTGCCAAATACATATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTATTGGATGCCTTGG ATTGGAGGCTTAGATCAGTAACCCCTCTTAGCTTCCTCGGTTTCTTTGCCTTCAAGCTTGATTCTACTGGAAAGTTTACT GGATTTCTCATTTCACGGGCTACAGAAATCATCTTATCTAATATCCATGGTATAAAATTCCGTACAGATTATGTACACTT TACTTACTTTATATATATACCATTGCTTATGAAAAAAAATTTACACTTTACTTTTTAATTTACAGAAAAAATCTTGTAAC TTGTAAACCAACTTTTTATTAATGGACGATAACCAAAACCAATTTGTATGACCGTTAATATCTTAATGCTAGAAATAATA GTAGTTGAGATGTTGATTAGTAGTGAAGGTATACCGTATATATGCATTGTGAGTTGCTATTGAGTTTCCTGATTGGATAT TAATTTGTCCGCAGACGTTAGCTTTCTTGCTTACAGGTCATCATGTATTGCCGCCGCGGCCATACTCTCTGCATCTAATG AAATTCCTGAGTGGTCTTTTGTTAAACCTGAGCATGCTGAGTCATGGTGCCAGGGTCTAAGAAAAGTAAGCATATATATG TAGTATGGGAAA
CDS sequence (LotjaGi4g1v0161600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGCTACTTTCTGACTACGACCTCCTCTGCGGCGAGGAAGCCTCCGGGATCCTCACCGTAGAGTCACCGGAATGCTC CTCCGACTTCTTCGATTTCTCTCCGCCGTCACCGTCGCCGTCGTCCACGGAGGAGGAGTCGATCGCCGTTTTCATTGAGC ACGAGCGCAACTTCGTTCCTGGATTCGACTATCTCTCAAGATTCCAATCTCGCTCCCTCGATCCTGACGCAAGAGAAGAA TCTGTTACATGGATTCTCAAGGTACACGCTTACTATGGGTTTGGGCCATTGACGGCGTACCTTTCCGTCAATTATATGGA TCGGTTTTTGGATTCTCGCCATTTGCCGCAAACAAATGGGTGGCCTATGCAACTTATATCTGTTGCATGTTTGTCCTTAG CAGCAAAGATGGAGGAACCCCTGGTTCCCTCTCTCTTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAGCCGAGA ACAATTCGTAGGATGGAGCTACTTGTATTGGATGCCTTGGATTGGAGGCTTAGATCAGTAACCCCTCTTAGCTTCCTCGG TTTCTTTGCCTTCAAGCTTGATTCTACTGGAAAGTTTACTGGATTTCTCATTTCACGGGCTACAGAAATCATCTTATCTA ATATCCATGACGTTAGCTTTCTTGCTTACAGGTCATCATGTATTGCCGCCGCGGCCATACTCTCTGCATCTAATGAAATT CCTGAGTGGTCTTTTGTTAAACCTGAGCATGCTGAGTCATGGTGCCAGGGTCTAAGAAAAGTAAGCATATATATGTAG
Protein sequence (LotjaGi4g1v0161600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLLSDYDLLCGEEASGILTVESPECSSDFFDFSPPSPSPSSTEEESIAVFIEHERNFVPGFDYLSRFQSRSLDPDAREE SVTWILKVHAYYGFGPLTAYLSVNYMDRFLDSRHLPQTNGWPMQLISVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPR TIRRMELLVLDALDWRLRSVTPLSFLGFFAFKLDSTGKFTGFLISRATEIILSNIHDVSFLAYRSSCIAAAAILSASNEI PEWSFVKPEHAESWCQGLRKVSIYM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 262 | 257 | 6.4E-125 | – | |
| PANTHER | 6 | 262 | 257 | 6.4E-125 | ||
| SUPERFAMILY | 44 | 177 | 134 | 1.19E-35 | ||
| Pfam | 48 | 177 | 130 | 4.4E-30 | ||
| Gene3D | 50 | 241 | 192 | 2.9E-46 | – | |
| Gene3D | 61 | 178 | 118 | 2.9E-46 | – | |
| ProSitePatterns | 78 | 109 | 32 | - | ||
| CDD | 82 | 170 | 89 | 3.36278E-16 | ||
| SMART | 83 | 171 | 89 | 2.1E-18 | ||
| Pfam | 180 | 261 | 82 | 1.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0161600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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