Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0167200 |
Transcript ID | LotjaGi4g1v0167200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | OBP32pep, putative (DUF220); TAIR: AT1G70480.1 OBP32pep, putative (DUF220); Swiss-Prot: sp|Q6C9Y6|EFGM_YARLI Elongation factor G, mitochondrial; TrEMBL-Plants: tr|A0A072TRK0|A0A072TRK0_MEDTR OBP32pep, putative; Found in the gene: LotjaGi4g1v0167200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:31860970..31864097) extracted from Lotus japonicus Gifu genome v1.2.
CAGAATAAATCATTTTCCATTTCCAGGTTTCAAGATAGGGTCCGGGGTTGGCTCATTGGAATATAACGTGGGGTGATCAT ATTTTTTACCCTGTAAGTACTCTTTGTAATTTTGTATTCCTCTCTATATCTTCTCTATTCAATTAATTGCTTCTATCCTT ATCAATTTTCATGAAAATCTCCTCTGGTTCTTACTTTTTGTTTAGCTTTCAAGTTGTGTAATCTGATAGGTCATGCTTGT TCTATATTTGGTTTGAGTTTTTTTTAGATTGTGTTTTCTCGTGCATTGGTGCTTAGTTTGCATGGGGCAAGTTGTCTTGG TCAATTAATTTGTATTACTTACATGGAAAATTCGTCAAAAAAATTCTCTAGCTGTTTCTTGCATTTTTTCCTGAACTGTA AGAATCATTAATATCACCTCCATCAAATTGGGAACTTTGTAATAGAGGCCTTATGTATTTGATTTGAGACTTCAAATTTT GTATTTATAATATGAATTAGCTAAACTGTTTTAGAAAGATTTCAGGTTCTTGTGATGGATGAGTCAGAGATTACCAAGTT CAGCTTAAATGTCAAGAAGGATGAAAAAGATGGGTCCCCAAGGGGATTGAATCCAGCAATCTCTAAATTTTTTGTGCAGC TCCCTAACAAGCTTCAGAATATTCTACAGGTCAATCACCGATCTTGTCGCTTAAATTTTATTAGGAACCTGGAGTGGCAT TTAACCTATTATTTTCTTGCTACAGTCACGGCTAAGTAGATTAGCAAAGCAGAATGGAATAAATTGGATGAGATCTGTTC AGAGAAATGGAGATGGGTCTTTCGATGCCTCTGAAGCTGAACTAGCTGAGCAACTGCGAGCATGGAAAGAAAACCCTTCT TGGGTTGATAAGCCGCCGCAAATAAAGGTGAGAGGCATTTTAAGGAGAAAGTTTGAGATGCCTCTAATGTTTTACAAATT AATTAATAAGGTTTCTTCCATTCCAATCAGAAGATTTCTGAATATTTCAGAAGTTTGAGATGCCTCTAATGTGTGTGGAT GAAATCTGTTGGAGAATTCCAATGTGTGGCAGAGAAACTGTTTGACTAAACAAAGCAATGGGTAGCACATTGATGTCAGC TGAATCCTAGTGGTAGGGGATTAGGAAATCCAGTCTGTGATGAATCCAAACAATTGAAATAATTAAGGAGACATCCATGT CTTTTTATGTGTCAGTTTATTTATTTAACATAATGTTCTTTTGCAGGTGACTGTTCCCAAAGGCTCACTTTGCAGCCTCA ATGCAGAAGTTGATGTTGGGCTACCCCCTGGTGCAGTATATAATATAGTGATAGATCCTGACAATAGAAGAGTTTTCAAG AATATCAAAGTAGGTGACTTCCAACATCCATAATTGTGCTCACATCATGTTTAGTTACTACCTTTCTATAAAAAAAGATC GTCATTATTGGAACATTCTGTTTTGTCTTGATTCTGGTTTTTGTTTCTGCAACTCAACATGGCAATTTTTTATTGCACAG GAAGTGTTATCCAGAAAAGTTTTGGTTGATGAGGGTCACAGGCAAGTGGTTGATCTTGAGCAAGCAGCCATTTGGAGATT TCTGTGGTGGTCTGGTACTATTTCGATTAATGTTTTAGTAGACCAAAACAGAAAAGACTACTCTGTAAGGATCTTCCCCT CTTTTAGATAACCAATGAATTCCATATTTGTTTCCATAATTATTTAAGTCAAATGGGATGATGGAATCTCTCCAGGACAC TCTTGCTTAAACTGCAGATCTTTCATGGTTTTGTTAACATTAGTCCTTAGGGCTGAGGATAAGCATAAATAAAATGGAAA TATTTATGTACAAAAAAAAGTAATTATTACAAAAAAGATAAAATAAGTGCAATCAATGCTTTGATTGCTTTCCTTTTAAC AAAAAATGTAAATCATTTTTCGTGTTCTTATCCTTAGCCCTAAAGGCTGATGTTTATAAAACTGAATCTTTTAAGCAAGT GGACTTTGTTATTTTATGTCACTGACAGATTTTACATAAAATTGGATAATAATGTAGAATTTCAATTGAATTGTGGACTT AATTGTTGCTACTTGCTAGGAAGTGTCTTGGTTAAGAGAGTAATATGTAAATGAACTGAGCCTGTGACTCTGTACTTCTG TTCATCCAAAAAAGGATGAGAGCTTGTTTGATTACAGTTTTATAAAACAGTTTTAGTTTTTCAAAACAGAAAAAAAAATT GATGTGAATAATTCTCAAAAACAGTTCTTTTCTCTTTCCAGTATTAAACTGAAATCCCAAAACATCCCAGAGATGTTTTC TCTTACTATTTTTTAGTTTACAAGATAGGTTTTTCAGTTTTTCGAAACATCTCGTTTAAACTGTTTTTTAATTTTCTTCT TGTGAAAACAGGTTTTAAAAATTGTTTCTGAATGTCTTACATTCTGCTATCCAATTTTGATCAGATGAAGTTCAAGCAAA CCAAGACTGGATTCATGAAGAAGTTTGAGGGCTGCTGGAGGGTAGAGCCTTTATTTGTTGATGAAGCAACATGTTATCCC TTTAAACCCGTGACAAAAGAAGATTATAATGTGTGTACAAGAGGCAAAGGAAGAATTGGGTCTAAAGTTAGCCTGCAACA GATACTTCAACCGGCCGTTGTCCCTCCCCCTCCCATATCATGGTATTTGAGGGGAATTACAGCGCGAACAACTGAGATGC TGGTAACTGATCTGGTAGAAGAAACTGTAAGAATCAGAGGAGGATATGAAGCTGAAAAGTCTATAGAGGAGGAGTTTGGG GGAAAACCTGGCAAGAACGTTGACCTAATTGATAACACTAGTGACATTAAAGAAAGATGGATTTTACGTAGAAAAAATGC AAAGCAGGGTTATAGGAAACTGCAGTCTGCTAAATGATCATTGATTTTCCTATGTCTATTTATTATTTTCGAGTAATTTA TCTAGATTGCTGCATAGAAGTTCATTTTACTAGAGGATTATAATGTATGCATCTTATTGCATAATGTTACGGTCACTAAT TTTCAACTTATTGCATTGCATTCCTGTTAGATAATCTTTGGTGAACTACCGTCCATGTATCCAATTACATAAGGCATGAC ACTGCAGT
CDS sequence (LotjaGi4g1v0167200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAGTCAGAGATTACCAAGTTCAGCTTAAATGTCAAGAAGGATGAAAAAGATGGGTCCCCAAGGGGATTGAATCC AGCAATCTCTAAATTTTTTGTGCAGCTCCCTAACAAGCTTCAGAATATTCTACAGTCACGGCTAAGTAGATTAGCAAAGC AGAATGGAATAAATTGGATGAGATCTGTTCAGAGAAATGGAGATGGGTCTTTCGATGCCTCTGAAGCTGAACTAGCTGAG CAACTGCGAGCATGGAAAGAAAACCCTTCTTGGGTTGATAAGCCGCCGCAAATAAAGGTGACTGTTCCCAAAGGCTCACT TTGCAGCCTCAATGCAGAAGTTGATGTTGGGCTACCCCCTGGTGCAGTATATAATATAGTGATAGATCCTGACAATAGAA GAGTTTTCAAGAATATCAAAGAAGTGTTATCCAGAAAAGTTTTGGTTGATGAGGGTCACAGGCAAGTGGTTGATCTTGAG CAAGCAGCCATTTGGAGATTTCTGTGGTGGTCTGGTACTATTTCGATTAATGTTTTAGTAGACCAAAACAGAAAAGACTA CTCTATGAAGTTCAAGCAAACCAAGACTGGATTCATGAAGAAGTTTGAGGGCTGCTGGAGGGTAGAGCCTTTATTTGTTG ATGAAGCAACATGTTATCCCTTTAAACCCGTGACAAAAGAAGATTATAATGTGTGTACAAGAGGCAAAGGAAGAATTGGG TCTAAAGTTAGCCTGCAACAGATACTTCAACCGGCCGTTGTCCCTCCCCCTCCCATATCATGGTATTTGAGGGGAATTAC AGCGCGAACAACTGAGATGCTGGTAACTGATCTGGTAGAAGAAACTGTAAGAATCAGAGGAGGATATGAAGCTGAAAAGT CTATAGAGGAGGAGTTTGGGGGAAAACCTGGCAAGAACGTTGACCTAATTGATAACACTAGTGACATTAAAGAAAGATGG ATTTTACGTAGAAAAAATGCAAAGCAGGGTTATAGGAAACTGCAGTCTGCTAAATGA
Protein sequence (LotjaGi4g1v0167200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDESEITKFSLNVKKDEKDGSPRGLNPAISKFFVQLPNKLQNILQSRLSRLAKQNGINWMRSVQRNGDGSFDASEAELAE QLRAWKENPSWVDKPPQIKVTVPKGSLCSLNAEVDVGLPPGAVYNIVIDPDNRRVFKNIKEVLSRKVLVDEGHRQVVDLE QAAIWRFLWWSGTISINVLVDQNRKDYSMKFKQTKTGFMKKFEGCWRVEPLFVDEATCYPFKPVTKEDYNVCTRGKGRIG SKVSLQQILQPAVVPPPPISWYLRGITARTTEMLVTDLVEETVRIRGGYEAEKSIEEEFGGKPGKNVDLIDNTSDIKERW ILRRKNAKQGYRKLQSAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 28 | 333 | 306 | 1.4E-131 | – | |
PANTHER | 28 | 333 | 306 | 1.4E-131 | – | |
Gene3D | 109 | 218 | 110 | 5.6E-7 | ||
SUPERFAMILY | 110 | 211 | 102 | 4.47E-7 | – | |
Pfam | 171 | 242 | 72 | 8.9E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0167200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…