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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0168800 |
| Transcript ID | LotjaGi4g1v0168800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT2G02650.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A1B5Z8J2|A0A1B5Z8J2_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0168800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:32426808..32434394) extracted from Lotus japonicus Gifu genome v1.2.
CCTAGTCCGAGGTGCAACCCTGTGTCATTTTATCACCACCTCACCCCTTTCCTATCCACCCCAGATTTCCACACGCCTTC CATAAAGCGGCGCGAAGCCTCAATCCGAACCCCATAACATGCCACGTGTACCAACTCTCCCCTTACTCTCCATGGTACCC CAGGTCACCCTATCATTCCCCATCACACCCTCTAACCCTAGTCTAAGCTATATATATCCACCCCTCCCCCACCATTTCCT TTCCTCTTTTCCCCTTGCTCGCTTTTCCGTTCGTTCTTTCTTTCTCTCTGCAAATTTTCAGCAAGAAGAAGAAGAAGGTG AGAGCCAAATCAAAATTAGGGTTTCTCACTGGGAATGTGATTCATTTGATTCATTCACTCGCCATCGCAGACGAGAGAGA GAGAGAGAGGTTTCATTGTTTTCTTCAATGGCGGACAAGAGATTCAGCGGCGTGATTGGCTACGCGCTGGCGCCGAAGAA GCAGAACAGCTTCATCCGCGACTCGCTCGTTTCGCTGGCGAGGTCACGCGGCATCGACCTCGTGCGGGTCGACTCGGGGC GCGACCTGGCGGATCAGGGTCCGTTCGATTGCGTCCTCCACAAGCTCTACGGCGACGATTGGAAGCGCCAGCTGACGGAA TTCAAAGCGCGGAACCCGAATGCGGTTATCCTCGACGCGCCGGAAGCGATCGAGAGGCTCCACAACCGGATTTCGATGCT GCAGGTGGTGTCGGAGCTGAAGGTTGATGACCGGAACGAGACGTTTGGGATCCCGAAGCAGATTGTCATCTACGACAAAG AAACCCTCTCCGACGGCCAGGCCTGGGAGACGCTGAAGTTTCCGGTGATCGCGAAGCCGCTGGTGGCTGACGGCAGCGCG AAGTCGCATAAGATGGCGCTGGTGTTCACCCACGGCGCGCTCAACAAGCTCAAGCCGCCGATCGTGCTGCAGGAGTTTGT TAACCACGGCGGCGTGATTTTCAAGGTGTACGTCGTCGGGGAGCATGTGCGGTGCGTGAAGAGGAAATCCCTCCCTGACG TTTCTGAGGAGAAGGCGCTCGGCGTTTCAGAGGACCTGCTATCGTTTTCGCAGGTGTCGAACCTCGCCAGCCGTGACATG ATCGACGATGACAAGTACTACATGCACATGGATGACACTGAGATGCCGCCGCAGGGGTTCATCATCGACATTGCCGCTGG CTTGAGGCGCGCCATGAAGCTGAACCTTTTCAACTTCGATGTGATTCGGGATTCGAGATTAGGGAATCGCTACCTCATTA TTGACATCAATTACTTCCCTGGGTATGCCAAGATGCCCGGTTATGAGAAGGTTTTGACTGAGTTTTTCTGTGATGTGATG TGCAAGAAACAGCAGGAGGAGGAACAAGGTGAAGGGGATAAAGCTGCTTCGCCTGCAGAGAAAGAGAAAGAGAAATCTGT TCAAGTCTAAAAGAATTGTGTCTTTTGGGTAACCAGAATTTCCTCAGTGGACCCAATTGCTGGTGGGTGGCTAGGCTCGA GTTGCAAATTTCGTTTAGGTAGAGGTTGGTTGGTACAGTGGTGTAAAGCCAGTTTAGGGTTGTTTGTGGCTAGTTTTTAA CCTCTTAACAACAATGTGTATATTCCATCAACCATTGCTCTGGAAATAGGTACCTTTTTCAACACCCTCAAGTTTTAGAA AAAAAAGTTGTATTTTGAGGCTGAAGATCACCATGCTAGGAACTGTTTTGATTTCTGTCTTTGCTTTTTTAACTCAAATG CCTTTTATTCTCCATCTTGCCAAATTCTATTCACATTTTGGATTTATTGCTTTGATTGTATTGATTCTGTATCAGGTTTT CTTATTCAGTTATATATTCCTTTTTTTACCTCATAGTATTTTCAGTCCTGAGATTACATAAATGGTAGGGTTACTTAAAT GGTATTATGCTTATGAATATTCCTTAAAGATGATTGGCATTAAGTAGAAAGATATAGACTCTTTATTCTTTCCTCGCCAT TGTCTTCAACTATCTGATGTCTGAATAATGGCACAACATGAGGAAACCCATTATCTGTTTGTTTGCAAGCTTATTAGCTG TTTATGTGTTGAAGGTTGCTCATGCACATATTTCTTGACAGGGTTGTGGCCACTGGCCAATTACCTTTGCATTGTTTTTC TTTAATTTCTTAAGTTGTTTTTTTTTTTGCAAAATTAGCTTTATATAGTCCCTTATATGCGTATATCTAGATTTTCTTGT GACTCACATCATCATCATAACAGGCTTCTACCGAAGTTTGAACATCAATTGTGACACCTTTATCATCCACATATACCAGC AAAAAAATAGCAGCAGACCTAAACTTTAAATGCTACATGCTGTTATATGCTGGCCAGGCCAATGTGTTTGCTGCCAAGAT GAATAATCTTTTCTTTGTGAAATATCTCTGATTATTGTCTAAATGCATTACTTTCCAAGATATGCTCTAGTATGTAAAAT TTTCAGCATTAGTGGACATTTTCAGATTGACTTGTTGTGCTTTTGGAAGATTGAAAGTGTTACCTTCTGCCCATGTTTTA TTAATGTAAACTAACAGCTTGTTTCCAGAACAGTCACTTACTAGCATTGAGTGATGTGTGATAAATAAAGGGGCATTTGA TGTGTTTACAACCAAATTTGACCCTGTTTTTGATTCTTGAAGTGATGTGGTCTAATTGTAATCCAGACAAGTGAAGGGAA GATATTGTAATTGCTACTGCTCTTGTTTAACATGGTTGATACCCCCCACGCCTTCCCCTCATCCCAAACAATTTTGGATG CCAGGCATGGGAGTTTTCTCTCACTATTTTGTCAGAGATCATGTCCAGTGCCTTGTATTTGTGGTACACTGGTACTCCAT TGTGATTCTCTTCTTAACACATTTTGAAACATAGATGTTAGATCATTTTGTTTAGTGAATATTTTTTGTTTATGGATTAT TTTTTCTTTTAATAATTTACCATTGACCTTTCCTTAACTTTAGAGTTTTGTTCATATGTATATTTGGATTTCCTTTGGGA GATTTGAAGGTGGTTGGAGTACATTTAGGTATGCACATTAGGCTGTATTGAATTAAGTTGGTGCAATTTCAGAGATTTTT TTGACGCTTTCTGTTACTTCAATGTTTTATATTGATGGTAGGTAATCTATTACAATGATTTTGATTCTATTTTTCGGACA AAATATCTATATGTATATGGTATGCAACTATGGATTGTGTGTTGCTCCTAGTTTTTATTAGTGCAATTTTTTGTATGTTA AGTGTGCTTGTTAGTTTTAATATCCTCATTTTCCTTTTTAGATATGGTTATCTTATCCTTTTAATTCTTTTAATCTAATA CTTTCACTCATAAGAAGAAGTTGTAGTTTTTCAATTGGGTATCTGATCCTTTAAATTGAAGCAGTGGATTGAAATTTTCC TATATGAAGTTTCATAGAATGATGATATTCAGGTCTTGCTTTTTTTTTTATCATTCAAAGTTGTAAGGTGGCATATTCAG GAAAGGAAAAATATTAAAAGAAATTCCTTGTGGGCATAGTGAGGTTTAAGATCAAGTTGTAATGTAGGTGATTAAATTTT GTATTAGAAGCTGGTTAGATAGAGCCTGTATACTAGTTCGCAAATAGGCCTCTGTCATAGTGTGTTTTGCCAATAGGCCT CTGTAGTCTGTTCTGTTGGTTATCCTGCCTAGAGGCTGAAGTCTCCTCAGATTTGGGTGTTTAATCCTGCCTTTCACTTC CCAGTAGCAATACATACTTATGTGTTGTGTGACTGACTGACTGTGATATTGTGCTAGTGCTTGTTATAAGAATAGCATCC CTGCTATTATCAATGATGGAGCTAGCCATTCAAACAATCAAGGTTTGAGGAAGAGAGGCCATGCATTAGTAGATTATTAA AATTATAGAAAAGCTATAAGAAGATATATTCTGCTCCCCATGGTCCCTCTCTTGGTACACAAGGTGTGTGATCTTTGGAT GCTAGTCTTCAGTTTTTTTGTAGGGGTATAGCCGTATAGGGGAGAAGGCCATATCATTCTGCATCAGGATGATAGCATAT AATTATAATTCTACCCTTAACCTGAATTTGTGAGAAACCAACACCAAGCATTGGTTGGGGGTGAGGGGAAGAGTAGGGGA GAAGCCCATCCCCCCTCTTTTCTTTTCTTTTTTCATATATGTATACATTTGAATACGTCTTAATTTTAGCTGATCTTGTG AGTTTCTGGAGGGTGTTCTTCCATCTTGACTTCCTGAAAAACTCAGCTTACATCAAATTAACATACAGTAGAAGAAGGTC AATATGTTAAGAAAATCTGTATAGTGGTGGACTGGTGGATAAGTTGCATCCCGCATAAACATGACAGGGAACTGCGATCA ATCACATAGTCTGCCTATCTGATTTTAGTGCTTGTTTGGTTGAACGTTTAAAATCTATGCAAGATCTCAAAATCACATTG ATACCCAAGTTACAGTGTGCTCTGTTATCTGCTTTGGAGTGTGTCCAAACACATCCAAACATGCTGTTAGTTTTGCTTTT GCCCATTGTATAGTTTCATTTCTGTGTTAAGTTGTGTGGGTGCCAGCCTGTATTTTATTATGCTCTATGTATGTGTTCAT TTTCTGTTTGTCCGGTGTGCTGCTTGACTTCTGTTAGTCGTTTGAGAGTCAGATATCCATGTCTGAGCTTTTCAACGTAC ATGGGTCCTTTATAAATTAAACTTGTCATATTTGCTTTTCATGCATTGAAATGCTACTGTTGAACATACGGCTATTGAAT TAGTCAAGCCTGTTCGATCTAGGAAGCTTCTGCGAGTGCTATGATTCATTTACACCTCTACTCTATTTTACGCCACTTTC TATCTCTCTCCTCTTTCAGTATATCACCTATCAAATATCCTTTTTTCTCTTATTTTCTCCATATCTCTCTCTTCTCTACA CTTTATTTTCATGGGCCAAATGTAGGTGGCTTTCCTTTTCTGGTTCAAAGAAGTCTTTTATATCTCGTTTACAATTTGAT CTTTGTCCTCGTCTTCTGACTTCTCATCATGGGAGAGAAGTATTGGCGGGTCTTTCACGTTTCTCCAAGTTTAAATTCTT AGACATGACACGATAGTATCATTTCTGGCATCAATGTGCCGTAAAAGATAGTTACCATTACAATGATAAAGAAAAAGAAA AGATCAGAAAATACTTCAATCTTCCTTTTATTGCAGTTTTTAAAATCTTGTATCAACTGGTGTGAATCCCACAAGAATTT AAATGCCGTATATATAAATTTAATATATATAAATTTTTTTTATGAAAGAGAAATATGTAAAACGTTAGAAGATTTCCGAA GAGAATATCATATATAGCTGAGGGAGGAGAGAAACTGTCTCTCTTAACCTCCAGTGAAAGGGAGCATAGAGCTTTTCTGA TCCTTGAGTCTGGTTGCAATACCTTGGCTCTGCAGTGCAGGCCAATTGCTGTATGATGAAAGACAAATGAAACTGGAAAA AGAGAGTAACTGCAATTGACATAACGTAAAGCACTGAAGGAATATATATATTTTAACATGTTATATAACTTATTAAGTTA TTATAATATTATGGAATACTATTTGCTTAATGCTATTTAATTGTCAAATGATGAACGGAGCTCTTCAAGGATATATTATT GTTAGGAACTGCTCTCGGACTTATATGTTCTTACTTGTTGACTGATATATGAGCTGGGCTCAATGTGCCCTCCCATCCCC TTGCTGAGCTTTTAGTTTTTTCATGTCGTCAAAGAGTTGAACAATGAAAATAGATGGGAAGTGCCTGATTGAATTGATCG GGTCATGTAGTAACAAGGTTCAAGTTTACCAGTGTGTTAGATGCCTCAGCTGCATTGAATGTGTAAACGGCTCGTCTCGT GAATTCACTGAATTGAATGTGTTAATTGGATTTGTACTTGCTATGATCGTTGTGGCGAACCAAATTAGGGAAAGTCATTA GGATTGTCAAGATTGCAGTATCAGCTTGTGTAGCAAAATGAGAAATAGCAAAGTCAGATTGGTAAGATATTAAAATTTAA AAGACATGGCGTTTTTAACATTATGGGAGCCTTGTGGTTTTTTAAAAGGAATGTTTAGCTCAAAATTTCCAGCCATGATA TTTTAGATAGATAACGAGAGTCCAGGTATTTATGAAAATTATTGTTATCCGTACTATGAAAGTCTTTGCAAAATTGAACT ACTTTTAATGACAATCAGGGACTCTGATATTACTACTGATTGCAAGGAAAGCATGAAACTATGATTGAATGTAAAACAGT GATGAATAAGAGGCTAGATTAACTAGGAAGTATTATGGGTTGGATGTACCCTCCTGCTATTCAGTTCTACCTTACATCTC TCACCTTTGTTTTGTATCCTAATGTTGAGGACACGCATGTTTGGGGGCAATCTCAGGATGGCGTGTACTCCGTCAAGAGC TGTTATTCTTGGCTTCGCTCTTCGGTGGCCTTTCCACTGGACCCAAGAAGTTCTTGATCTTGGGTTTGGCATCTTCCGAT TCCAGAACGATTTTGGGTGTTTGTTTGGCAAGCTTTGCATGAGGCTCTGCCATGTGTTGTTGCTTTGCATCGCAGAAGTA TGGTTAGTTCTCCTTTGTGCAGCTTGTGTCGCATGGTGCCAGAGACGATTGTTCACTGTGTGTGGGATTGCTCTGAGTTT GGGAATATTTGGCAGCAGGTTGGGCTGGGAGGTGTTGCGGGTGGCCCGATTTCAGACTTCTGGAATTTAGCCATGGCCAT CCCCAGTGAGAATCGAGACTTGTTCGCAATTCTGTGTTGGGAGCTTTGGAAGAGTCGTTATGAATTTCTCTTTGTGGGAA AGCGTGTCCCAGTGGCGGTGGTGGCTGGGAGGGTTAGCTCGTTATCGCGGTTCGTGCGTGGTGTTCTGGCGTGCCAGGTT CAGTGTCCAACACCTCGATGGATTGCGTGGAGGAGGCCTCCCCGTGGTTGGGTTGCTTTGAACGTCGATAGAAGTTTGCC TGGCAATCGGGGGTTGTCTGGTTTTGGTGGGTTGATTCGCAAGGGTGATGGAAGTTGGGTGTTTGATTTTTCCAGTGCTA TAGCGGTCTCTTGCATCCTCAAAGCTGAGCTTCTGGGCTTGTTCTATGGTTTGGAGTCGTGTTGGCACTGTGGGGTTCAC CGGGTAGTAGTGTCGTCTGATTCTTTGCATGTTGTGCAGCTTGTCAAAGATGGGTGTCCCGTTTGGCATCACTTTGCAAG CATTGTGGGTATTGTAAGGCGTTTGATTGGCTTGCCTTGGGAAGTTACCATTGCCCATGTTCCGCGGGAGGGGAATGTGG CGGTGGACTTTATTGCAAAGATGGGGGCCTCCTCATCTTCTAGTTTGGTGGTCCATGAGCTTCCACCTCATGGGTTGCAG GAGTTTCTTGTCCACGACCTTAGTTTTTCTTTCCTTTAGCTCATGTATCAAAAAAAAGTACCGATCAAATAACTTTCCTA ATAGGCAACGTAAGTCAATATAAACTCAATTGTTTTCTATTTAACATGTAAACCATTACTAGCAGGG
CDS sequence (LotjaGi4g1v0168800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAGTTCTCCTTTGTGCAGCTTGTGTCGCATGGTGCCAGAGACGATTGTTCACTGTGTGTGGGATTGCTCTGAGTT TGGGAATATTTGGCAGCAGGTTGGGCTGGGAGGTGTTGCGGGTGGCCCGATTTCAGACTTCTGGAATTTAGCCATGGCCA TCCCCAGTGAGAATCGAGACTTGTTCGCAATTCTGTGTTGGGAGCTTTGGAAGAGTCGTTATGAATTTCTCTTTGTGGGA AAGCGTGTCCCAGTGGCGGTGGTGGCTGGGAGGGTTAGCTCGTTATCGCGGTTCGTGCGTGGTGTTCTGGCGTGCCAGGT TCAGTGTCCAACACCTCGATGGATTGCGTGGAGGAGGCCTCCCCGTGGTTGGGTTGCTTTGAACGTCGATAGAAGTTTGC CTGGCAATCGGGGGTTGTCTGGTTTTGGTGGGTTGATTCGCAAGGGTGATGGAAGTTGGGTGTTTGATTTTTCCAGTGCT ATAGCGGTCTCTTGCATCCTCAAAGCTGAGCTTCTGGGCTTGTTCTATGGTTTGGAGTCGTGTTGGCACTGTGGGGTTCA CCGGGTAGTAGTGTCGTCTGATTCTTTGCATGTTGTGCAGCTTGTCAAAGATGGGTGTCCCGTTTGGCATCACTTTGCAA GCATTGTGGGTATTGTAAGGCGTTTGATTGGCTTGCCTTGGGAAGTTACCATTGCCCATGTTCCGCGGGAGGGGAATGTG GCGGTGGACTTTATTGCAAAGATGGGGGCCTCCTCATCTTCTAGTTTGGTGGTCCATGAGCTTCCACCTCATGGGTTGCA GGAGTTTCTTGTCCACGACCTTAGTTTTTCTTTCCTTTAG
Protein sequence (LotjaGi4g1v0168800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSSPLCSLCRMVPETIVHCVWDCSEFGNIWQQVGLGGVAGGPISDFWNLAMAIPSENRDLFAILCWELWKSRYEFLFVG KRVPVAVVAGRVSSLSRFVRGVLACQVQCPTPRWIAWRRPPRGWVALNVDRSLPGNRGLSGFGGLIRKGDGSWVFDFSSA IAVSCILKAELLGLFYGLESCWHCGVHRVVVSSDSLHVVQLVKDGCPVWHHFASIVGIVRRLIGLPWEVTIAHVPREGNV AVDFIAKMGASSSSSLVVHELPPHGLQEFLVHDLSFSFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 275 | 271 | 7.0E-46 | – | |
| PANTHER | 5 | 275 | 271 | 7.0E-46 | – | |
| ProSiteProfiles | 121 | 251 | 131 | 11.568 | ||
| Gene3D | 123 | 251 | 129 | 1.6E-16 | ||
| SUPERFAMILY | 124 | 252 | 129 | 1.9E-16 | ||
| CDD | 127 | 247 | 121 | 1.46644E-31 | – | |
| Pfam | 129 | 249 | 121 | 2.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi4g1v0168800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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