Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0170400 |
| Transcript ID | LotjaGi4g1v0170400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PLATZ transcription factor family protein; TAIR: AT4G17900.1 PLATZ transcription factor family protein; Swiss-Prot: sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808; TrEMBL-Plants: tr|A0A0L9T5N1|A0A0L9T5N1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0170400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:33050593..33054032) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAACAAAAATTGACAAGGCGAAAGAGAACAAGAAAATGAAAGGAAATAAAAGGGAAAGAAGGAGGTGGATTCCTTG CGCAAAACGTATCTTATAGGCTCGGGGTTTGGAGCTAGGTTCGGTTGTGTAGACTTTGCGCGGATAAGAACGACCCCTCT TGTCTCTCTCTATTGTTTCTCTCTCAACCGCCTCCAAACTTCTACAAGAACCCATTCCCTCTCACACCGCCTCAAACTAA ACTCACTCTCTCTTCACACTTTCTCACATTCATCACAACAAGGACACAAACAACGTTATTCTCTCTGTCTCCTATCAGTG TCTTCAAGCTGGCGTTAGAGAATCAAGACACCACCACCACTGTCCGGGAAATTAAGCCCAAGAACCGGAGAATCATGGTA ACACACGTGTGCTTCATTGAGCTTATTTTGTGTTTTGTTTTGTGGGTCATGCTGCTAATGTGTGTGTTTCTGTTGTCATT TTTATCTTTCTGAAATGCTATGATTTGGGGTTTATTTTGTGTTTTGGATTCTGGGTCTGATTCAAAATTTGATTTTTTTT TTAATAGGGTGCGGGAGGTCCTGATGATGAGGACAGTCATAGATGGCCGCCATGGTTGAAGCCTCTGCTTAAAGAGAGCT TCTTTGTTCAATGCAAGATGCACGCGGATTCACACAAGAGCGAGTGTAATATGTACTGCTTGGATTGTATGAACGGTGCA CTCTGCTCTCTCTGCCTCGCTTACCACAAAGATCACCGTGCTATCCAGGTGAGTTTATGAATTGATTGAATTTTTCTGCT TTCAATGATTTTTGGGTTTTTTTGCTTTCTAGCCTCTGACACATTTCTGGTCTTCTAGACATTGCTGTCAAAACCATCCC ATTTTTCCTTTTGTGGCGGTGCTAGATTTGTTCTTTTTCTGGAACTTGGTTGAAAAGTCCCCCCCTTTCGCTTCTCTACT GAGATTTGAACTTTCATTAATTTGGTGCTGTTTTCAATTTCTATGTGCCCAATCATCCCATGTGAAACTGTTTTTTTATG ATAAATTCCCATCAATTTTTTTTTTTCAAATTGAAGTTCCTGCATTTAACAATTCAGGGCATGGAGTGAAAGTAACCACC AAGCAGCTGAAAATGTTAGCTTTCCAATGCAATAAATGGTCATTCCCTTTTAATTTACACTGTTTTTTTGGGTGTATGAC AGATAAGGAGGTCCTCATACCATGATGTGATTCGGGTCAATGAGATTCAGAAGGTTTTGGACATCTCAGGGGTGCAAACC TACATTATCAACAGTGCAAGGGTTGTGTTCTTGAATGAGAGGCCTCAGCCAAGGCCAGGGAAAGGGGTCACCAACACTTG CGAAGTCTGCGAGCGCAGCCTCCTCGATTCATTTCGATTCTGTTCTCTTGGTTGCAAGGTATTTTCACTTCACACATTAT TGTGTCTTACATTTGTTAACTTCCTAAGCATTTTGGAAAAAGATATCTCCGAGCAAATCACGAAATTGGCTTGAAATCCT TCCATAAAAGAAGGAAATACCATTGAAAATCTCCGATTGTGTCAAATGTGAGTTAAGTTGGTTCATATGATTTAATGTCG GCTAAGTTAGTCCATTGACCGACATTTATCACAATTAGAGACTTCTGAGGATGTTTCCTTGTTCTGGGAACTAACTTGCT CGATGAATGATGAATGAATTTGGTGATTCACTAGAGAGAGGATTTGCTTAGTTTCAAAAAAAAAATGAGAGAGAGGATTT GCTTTGTTTTTAAGCTAGCCCTTTAAGTGGGTTGACTTTTTCTTTTAGCGGATTTGAATTTGAATTCTTTGCTTTTCCAA ATTTGAATTTTCTGCATTTCAATACTTTCTATGTGTATTAAATTCCAGTAACTGACTTGTCAATTTGAGTTTTTTGATTG AATATTTACCCATTCAACTATGAATTGTAGATTGTTGGTACATCAAAGAATTTCCAGAAGAAGAAGAAATCACCAGCAAT GGCGGCAATGGCTTCAGACTCAGAGGATTCATACGGCAGCAGTAGCAGCTATGGAGGACTGAAGAACATCAAGGTGCAGA GCTTCACTCCTTCAACGCCGCCACCAACTTCACCACCAACTTCAGTTAATTACCGAACGGCCAAGAGAAGAAAGGGAATA CCACACCGTGCCCCAATGGGAGGGCTAGCTCTGCAATACTAGGAACTTAGAAATTAACGTTATTGCGCTATAATGCCCTT GTATAATTACCCAGAACAGTAGTTTCCCTTGCAGTTTCAGAACTCGAGCTTTTTGCAGAAAAGGGCCGGTGCTGGAAGTG TTTGTGACTTTGTTCCTTTCTCTGTTGGTAGCGGTTAGTAGCGTTTGTGTAAATAGAAGAAATCCAATAGAAGTGGAAAA GGTTGGGGAAAAGTAGAAAATAAGATGTGAGATAGATTGGGGAAAAGAATGATGTAGCAAAATAAGCAAAGTTCCTTTCC ACCAAAGTTAAAGGTGATGAGACAACAATATAGGTTTGGGTTCTAGAGTAATTTACCATGTTTAGAGTTGGGATGTAAAA GGTGGGGTTATAAAAGGGTGTGGGAATAGAAGACCGTGACAAATGTAATGTATACAAATAGGTAGACTGTCTATACATGG AATGTGAAATATAATAGATTTGGTAAAATCATGCAGGGTAGAATTCTCACCTTTTTTTTTTCATGTTTTATAAAGTGAAT TTTCTGAATTTAACTGGTGGTGAGAGATTAATAGAATTTCAAATGTCTAATAGTGGTACATGATTATTTATTGTACTTTC TTCATAAATAAAAGTTTGGGTGGTATTCGTCCCTCTTAGCTTCCATGTTTTAGGCAGGCCCAATTTTTGTGAATTTATGG ATTGGGTGATGGTCTCCCAAACCGCCTGCACTAGGGAACATAGGTGAGGCGATCTCTCTCAAAATGATCATGGTTGTATT GAGTAGAGGCCTTGTGCAAAGTGGACCCAATAGTGAGTCGCAAACTCTCAATAAGGCAAAGCTAGTAAGTTGGCGAGTCT CGCACTGACTAAGAGAGCGCTCCTTCAAGATCCATCTACTGTGTTAGTACTTACGTGTTTGGTTTGGCACGAAGCTTAGA GATAACTCGTAAGCGCTCTTGGGTTGCGTAATTATGAGACCCAAGAGTCTATTTCTGATTAGATCTAGGGTTCGCACATA CCACTGTAAATGAAAATAGTTTAGCCTATAATAGTCATTTTATACCAAAAACAACTACATTTTTACGAGATTTACTTTCG TTGGGATTTGTTTCGAGTCTATTTTGGTTCTATTGCTCACTAAGTGTGAATAGGTGGTTTGGTCAATCACTACCCTAGAT TGCATGCTTCTTGGAATATAAGTCGTTTACAGAGGAATTTATAGATCGTCCACCAATACAACTCTCGCATTAACAATGAG
CDS sequence (LotjaGi4g1v0170400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCGGGAGGTCCTGATGATGAGGACAGTCATAGATGGCCGCCATGGTTGAAGCCTCTGCTTAAAGAGAGCTTCTT TGTTCAATGCAAGATGCACGCGGATTCACACAAGAGCGAGTGTAATATGTACTGCTTGGATTGTATGAACGGTGCACTCT GCTCTCTCTGCCTCGCTTACCACAAAGATCACCGTGCTATCCAGATAAGGAGGTCCTCATACCATGATGTGATTCGGGTC AATGAGATTCAGAAGGTTTTGGACATCTCAGGGGTGCAAACCTACATTATCAACAGTGCAAGGGTTGTGTTCTTGAATGA GAGGCCTCAGCCAAGGCCAGGGAAAGGGGTCACCAACACTTGCGAAGTCTGCGAGCGCAGCCTCCTCGATTCATTTCGAT TCTGTTCTCTTGGTTGCAAGATTGTTGGTACATCAAAGAATTTCCAGAAGAAGAAGAAATCACCAGCAATGGCGGCAATG GCTTCAGACTCAGAGGATTCATACGGCAGCAGTAGCAGCTATGGAGGACTGAAGAACATCAAGGTGCAGAGCTTCACTCC TTCAACGCCGCCACCAACTTCACCACCAACTTCAGTTAATTACCGAACGGCCAAGAGAAGAAAGGGAATACCACACCGTG CCCCAATGGGAGGGCTAGCTCTGCAATACTAG
Protein sequence (LotjaGi4g1v0170400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAGGPDDEDSHRWPPWLKPLLKESFFVQCKMHADSHKSECNMYCLDCMNGALCSLCLAYHKDHRAIQIRRSSYHDVIRV NEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKKKSPAMAAM ASDSEDSYGSSSSYGGLKNIKVQSFTPSTPPPTSPPTSVNYRTAKRRKGIPHRAPMGGLALQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 218 | 218 | 1.6E-130 | – | |
| PANTHER | 1 | 218 | 218 | 1.6E-130 | – | |
| Pfam | 70 | 141 | 72 | 4.1E-29 | ||
| MobiDBLite | 180 | 223 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0170400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…