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LotjaGi4g1v0186300.1

Overview

Field Value
Gene ID LotjaGi4g1v0186300
Transcript ID LotjaGi4g1v0186300.1
Lotus japonicus genome version Gifu v1.2
Description SAUR-like auxin-responsive protein family; TAIR: AT2G35290.1 hypothetical protein; Swiss-Prot: sp|F4JRP0|STIL3_ARATH Protein STICHEL-like 3; TrEMBL-Plants: tr|I3SHT5|I3SHT5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0186300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:41855492..41860174) extracted from Lotus japonicus Gifu genome v1.2.

ATTACATCTGTAACTGCAAACCCTTATTTTTCCAGTTACATCTCACCACTCTGCAACCTCACGACATAATCTCGACCTGC TACTTCTCTCAAAGCCCTCGCCACCTCCTGCCTCCGCCGTCCTTGCCGTCGCCGCCTCCATCCCTTCCGCCGCCGCCGCC GCCTCTGCCTCCGTCCCTGCTGCGCCGCTGCCTCTCTTGTTTTGGGTCGCTTCCTGCACGGTTGTTGCCCTGTTCTCATT ATCAACCTTCCATTGTTCCTCAATCCTCTCCACAAGCAATTTTCCTCTTCCTCATAAGGTAATACTTTGATCTGATGCTA TGGAGTTCTGATGCTTGAAATAGCTATATATCATTGCTATGTTTGTTTTTGGTAATTCAAGGGTGCATCCTTGTGAGTTG TGATAAGAGAAGAAGCATCGTCGAGTATCATAATATGTTTCCAGCAATTGATTTCTCACTGGTAATTGGTCTATTTTGAT TAGCTCATAACATAGCTACTACTTCAATAAATTTTGTTATGATGTATTTGCTGCTAAAAGAAAATTGGTGTTTGGTTAGA CAAGATTTATGCTTCATGCTTGGTATGTTTAGATATAAATTGATGAGGACATTTTGTGGAAACTTGACGTTAGAGAGAAG AATGAAGGAGCAACATCTTTAGTTAATTTTGATGAAGGAGGTTGGTTTTTCATTTTGTTTAGTTATTTCTATTTTGATGC ATCTTTAGTTAATTTTGGTTTGAGTTTCTTCTTTGAAAATAGACAAGTAAAGAATCTGGAGTCCTATCCTATCATTTTGA AATGTATATGAAAGGTTTTGGTTCATATAATGACTATAAGTGATACAGGAAGTCCATGTGGTAATTTTTTAAGGTCAGCC AAGGCGACATTTGCTCACTACTGGCTGGAGTATTATTGTAAGCCAAAACAATCTTGTTTCTGGCAATGCAATTCTCTTTT TAATGTTATGTGAAAGGTTTGTGTATGCTCTTTTAGTAAGCCAAAACAAGAGAGATTGACTAATGGGGGCTTGGTAGATC CCAGTCCTTAAAATTCAGAATTTGGAATTGGACTAATTTTATTCATCATTCTCTTTGCTAAGGTGAGACCTACCTACTTT CCTTTATGATTTTGTTTTTCCCCAACGAGTGAATTCACTGCAAGATTTTGCATTCCTTGATTGATTGCTTACATTATTTC TCATAATTGCTCTTTGTGGTATTAGTTTAGCAGCCTATATAAGATTGGGTCTCAGAACTTTAGGTGGTGTATTTGTTGAG TTTAAATTTTGATGTCACTTAGTGGTTTTAGCAATTTTCCTTGTTGCCTTGTCTTGTTTCCATCATGGATGGAGTTCTTT TCTTGAAACTGGCTTGCATTCAAAAGTGCTTGAATGTCTTTTCATCCATGGTGATTTTATTCTAGTTTCCTTTGTTAATT GCTCATAGTGTTCTGTTCATCTTTCATGATCAGCAAGGTTACACGATTCTAGTTTCTTTTGATACTAATGATGCATCTTT AGTGCACTTGTGCAAGTAAGCGCTTATTCTTATTGTGTGTGTGCAACTAATGGACTGCCATCTTGGTAGTTCAGGACTTC AGGTATCATCTTGTCCGGTTGCCCTACCAATAAAGATGGTATCATCAGCGAACTGTAACATCCTTTAGGCCACACCCCCT ATTCCAAAAGTCCTCAAGCACTCTATGGAAATCATCCTTCAGCAGGTCCCAAAACTTCTGAATGAATTTGAAATTAAATT CATCTGGTCCTGGGCTTTTGTCTCCTCCACACTCCCACACAGCTCCCTTTACTTCTTCCATCCCAAACCGCCCTGTTAGC AATTCATTATCGGCATCTGAAATTGATTTAAATGAAATCCCGTCCAATCGCACTAGAGTCCCAAGAGAATTTGTGAAGCA CTGCTCAAAATAATTTTGAACCTCTGTTTTAATTTCTTGTGGATCCTCCACCCAGTTACCATCAATCATCAGCCCCATAA TTGAATTTGTACGCCTCCTCCAATTAATAAGGGAATGGAAATACTTTGTATTCTGATCCCCTTCTTCGAGCCACTTAGAC CTGGATTTCTGGTATAGAAGTTATTCATGGAGTCTTAGCACTGTCCAAAACTCATCCAGCAACCACTTTCTCTCATTATT TTCCTCCTCCGACAACCCCTCCTCCTCTTCCTTGCGGTCCAACTCATTTTGTTTTTGCACAACCTCATTCCTCCTGCTCC TCAAGTCTTCAAAAACTTCTTTATTCCATACTTTTAGCTTCCCTTTCAGACACACAAACTTGAATGTATCCCGTCAATTT GTGTCATGCTATCTAATCTTGTTTTGGTACACCGCTCTTATCTTGAAACAGTTGAGGGGTGCCATTGATCCCAAGCGTCA CTACAAGAAGGGTGATTCAAAATCAAAGACACTTCCCAAGTATTTCCAGGCAAGTTCATTTTTGTATACTACTACTATGT TGATCATTGACAAGCATATGCTTCAATATAGATTTGCTACATCAAATATGGTTAGCTTTAATTTTTGGATCATTGGAATA TCATCAGATGGGAACAGTTGTAGATTCTCCATTGGACTTCTTCTCAGGAAGATTAACAAAGAAGGAGAGGAGAGCATCAT TAGCAGATGAGCTGCTTGCTGATCAAAACCTTGTAGCCTATAGGTAAGATAGGCAGTGAAGTATATAATTGTCTGCTTAA ATAGACAATGCCTCTCAATGAAAATAGAAACTTGTTCATGCACTTTCCTATGCTCGTCAGGCTACTTACTCGTTGTTTAT CAACTTTTTTCTAGGAAGCGGAAGGTTCGAGAAATCGAAGAACAAAACAAACCAGCTGGGAATGAAAATTGGAAGATTAA AGGCGGGAGTTCCCGGAAGCGAGCAAAAGAAAAGAGGAATTGCTGAATTTCCACCCTTTTTAAGATGTAGACACTCTCCT AAATGCTTTGATCAGTTTAGAATTATTATCATTATTTGAAAATATCCTAGTTATCTGTAAAACCTATTGATGCTTCAGAA AATGTTTATTTTATGGCTGAGTTGATATCCTGTGTTTAGAAAATGTTGATCTTTTTTGTTTGGAAGACTCAAATGGGGAG AGGGTCCTTATGATTTGGAGACTCAAGGCACATTTCTATTGCAAAAACTCATTTATGGGAGTTTTTTTTTTGCTGTCATG AAATTACTGTCCATATGCTTGCTATAAGAACAGAGGTTCTGTTTACATGAGATGTTACTGTGCTTATATGCTATACCTTG TTTTAGCTTATGTTACTGTGTTATACCTTGTTTTAGTTTGGTGATGTGTATTGATTTTGCAGTAAGCTTTCATAGAATGT TGATCTTTTGGCTGAACAGGTGTGGTAATTAATTCAACAAAAAAAAAAAAAAAAATTACAGCGGTTCTGTGGTGGAACCG CTGTAATATATATTATCAAATACAGCGGTTACCGTCTGAAACCGCTGTAAAAGAAGACTCAAGTACAGCGGTTATTTTAG AGAACAGCTGTTGTAGGTATGTATTTACAGCGGTTTTATTAAATCAACCGCTGTAAATAATGAGTCTTTTACAGCGGTTA GAACCGCTGTTAAGGCTTTTACAGCGGAGAGATCTACAGTGGTTCTGGACCGCTGAAAACCGCTGTAAAAGGCCAAAAAA AACCGCTGTAAAAGCCATATTTTGGTGTAGTGATTGAAGGTCTTAAATAAATAAATTTTCATTTACTAACAAATCGTTAT CCTCTAATCAAAACCCTTCATCAATAAAAGAACTCTTCAAGATAGCAGAACAATGGGTCAAAATAAGAAACTATTTATAG TCTCTTCATAGCAGTAGCCAGCGCTTATATATATATATATATATAGTAACAAATGCATCTAGCTATCTACATATAAATTT CTATTTCAAGCCCCATACACACTGATCTACAATCTCCTCCTCACACACCAATATCTACAGTGTTCTTGTTTAACTAACTA GGCTCTTTCTACATGAATTGCTTAGTCTTGCCGGTATCATTGATCCGAAGACGCTTCACACGGTATTACCCCTTAACCAA AGATGATGATCAAGATTTGGACAAAGAATTAGAATCCCACAAAGCTGTGACAGTGGCGGTGGGAAGAGAGAAGAGGGTGT TCCTCGTGGACCCTTTCATACTACAAGAGAACCAATTTCGAATTTTGATGGATCACACCTCCATGAAGATGGATCAAGGG GATAAGGAGGATCATCACCATCATCTCGGTTTCTCAACAAAACAACATGGAGTGGTCTTTGTTGATGTTGATACCATTTT GTTTCAGCACATGTTGTGGCTTGTGCATAATGATTACTCTTCTTTGTGCAACCTCAATTTGAAGGAAATTATTGATTTCT ATGCTCACGATGCAGTATGGTAACTTGTCTTGTCTAGCAAACGTAATTATATATGCCGAAACAATTCTAAGGAGAAATTT CTATAAGTAATTATTTAGTTTTAGAAATTAATTTGAGGAAAGAAAACAGATTGTAATCAATTGATAGAGTTTTTCCTTTC TTTCCCTTGTGACACTGAGAAGGAACACCTAGTTTCTTGTATTATTGCTAATAATGCATAGCGATAGATTATGATTGTAG TGACAATTCTTTCATTTTATCCAAGATTTATGTTACTTTCTTC 

CDS sequence (LotjaGi4g1v0186300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTGCTTAGTCTTGCCGGTATCATTGATCCGAAGACGCTTCACACGGTATTACCCCTTAACCAAAGATGATGATCA AGATTTGGACAAAGAATTAGAATCCCACAAAGCTGTGACAGTGGCGGTGGGAAGAGAGAAGAGGGTGTTCCTCGTGGACC CTTTCATACTACAAGAGAACCAATTTCGAATTTTGATGGATCACACCTCCATGAAGATGGATCAAGGGGATAAGGAGGAT CATCACCATCATCTCGGTTTCTCAACAAAACAACATGGAGTGGTCTTTGTTGATGTTGATACCATTTTGTTTCAGCACAT GTTGTGGCTTGTGCATAATGATTACTCTTCTTTGTGCAACCTCAATTTGAAGGAAATTATTGATTTCTATGCTCACGATG CAGTATGGTAA 

Protein sequence (LotjaGi4g1v0186300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNCLVLPVSLIRRRFTRYYPLTKDDDQDLDKELESHKAVTVAVGREKRVFLVDPFILQENQFRILMDHTSMKMDQGDKED HHHHLGFSTKQHGVVFVDVDTILFQHMLWLVHNDYSSLCNLNLKEIIDFYAHDAVW 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 134 134 4.0E-35
PANTHER 1 134 134 4.0E-35

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0186300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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