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LotjaGi4g1v0187500.1

Overview

Field Value
Gene ID LotjaGi4g1v0187500
Transcript ID LotjaGi4g1v0187500.1
Lotus japonicus genome version Gifu v1.2
Description MADS-box transcription factor family protein; TAIR: AT2G03060.2 AGAMOUS-like 30; Swiss-Prot: sp|Q1PFA4|AGL30_ARATH Agamous-like MADS-box protein AGL30; TrEMBL-Plants: tr|I3SWV0|I3SWV0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0187500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:42578119..42584217) extracted from Lotus japonicus Gifu genome v1.2.

AGTGTCGACATGTTGTAATGTTCTATCTTGTAGGAGTATTTGATTTGATGGTACGAAAAATGAAATGAAATCTCTAACGC TCTTTAGCTCCCTATTCTCCCGCATGCCACAATGACCGATTTTGCCGGTCACCCGGTCATCTAATCGTAAGCTATATGTA AGCTCTCTCTCCCTTTGAATCTGCCATTGCCAGTGCCATTGCCGAACAACCTGTCTTTCCCACATTTTTGGTTGTGAACC TTTTTAGTTCCATAATATTGGACTTCATCGTTTCGGGTGAGTTTATAATCTATGCTTCCCTCTATCTATTTTATGTTGTT TTCTTGCTTGGTCTTTCTCAATTGCTCACATTCACTGTTTTTCTCCTTTTCCCTTCAAATATTGATAAATAGGGTATGCA TGTTTGTTTTTCTTAATATAATTTCAGTTCTTCATTGTGTTTTGGAATTTGACTGGATCGATTTTGTTTTTCAATCTCTT TGTCAATCCTGGATGGTGAGTGTGTTTTTTTTTTTGTTTTTTTGTTTTTGATAAAATGAATATAATCTTGCAAAATGAGT GGATTGAAATTGCTACTGAAATGAGTGTTTTGGTACGAAAAAGGCTCTATTTTTAGAATCTTTTTTGTTGAATGGTTAAG GCAATAGTTGTTAACTATACAATGTGCAGGATGGGCAGGGTAAAGCTAAAGATAAAGAGGCTTGAGAACACCAATGGCCG CCAGGCAACATATGCTAAAAGGAAAAATGGAATCATAAAAAAAGCATCTGAGTTATCTATACTATGTGATATAGATATTA TACTTCTCATGTTCTCACCAAGTGGAAAGCCTTCGATATGCAGGGGGAGGCACAGGTATTTGCATAGCAATACTTTTACT TTAGAATTAGTTCATACTATAGCCTAGCATTTAAATGGGCTTAAGACACCATCTAGGTATAAGGCCACCTTAACGGCTAT TTTAGTAATTACTGGAGCAGCCAAAGACATGATTTCGCGTTAGTTTAACTGAATAAGTAAACAAGTATGGTTAAGATAAA AGTTCTTGTTTCTACTTTCTTGCACTCTTGAACCATGTGGCTGGAAATTTCAGGCATAAGAAAATTACCATTGTTGTCCC CTTTTTTATATTTGGGATTGAGTTGTAATTTAAAATTCTCAATTTTGTCAAATATTAACCCTTCTACTACTTAATAAGAA GGTACTAAATGAAAAATCGATATTATTGGTATCTTGAAAACATAAATGTACTCATTACTTTTGCTTTAGTAATTTGAAAA ATATTGAATCATTCAATAAGAGTTATGGATTGTTTGATTTCATAAGGTATGTTATATTCTGTTAAACATTAATGATGCTA GTGCTTCAAGTTTTCTCAAAATATTCTAATAGTTGGATTAGGAACTTGAACCTTTGACATCAAAGGGTAGGGCTGGTTTT ATTGAGATCTGAACTCCAATGGACCGAATTGTGGATAACACTTATGAATTTAGTTACTTCTGGACTCTGATTGTCTTAAA TTTTTCTTTTCTGTTGACCTTCGAATTTTTTGAGTTATCGGAAAGTTATATTGTTAATTCAAAATACTTCTATCTGTGTG ATTATTCACTTCCTCTGCTTGATGGATTCAGCAACTTAGAGGAAGTTATTGCAAAGTTCGCTCAACTAACTCCACAGGAA AGGGCAAAAAGGTACAGTTGAAATCCTTTCTTACATAGATATGATACATCTTTATGTGTACATTTCATTTATTTCTTAGT AATGCAAAAATTAAAAATATCTCCCAATTGAATGAAACAGGAAGTTGGAGAGCCTCGAAGTAAGTGATTTCATACAACTT ATTCTCCATAATCCATATTAAAATAGATTTTTCCTTTGAAATGATTGATTATCAAAGTTACCAGGAGTCTTGCTGATAAA TTTTTTCCATTTGAGAGTTCAGGCACTGAAGAAAACCTTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTATGG GTACAAGGTATGCCGCCATGCTGACACTAATTTAGTTATTGTTTCCGTCAACAGGTTTAATCAATTAGGACACTAACTAA AATATTCTTTTTTTTTTCTTACAGTAGTCAAAGAATTGAGGTAACTGTGTTAACCTCCGCCAATTACTTTGTTCATTTAT TCTTTCATTGTTGTTCTGTTACTAACTTGCTTTCTGCAATCTGCAGGATGTAAGTAATCATGCCAGGTTATTACAGAATC AAATTTCTGAAATCCAAAAGAGATTAAGGTCGATCACTTTTGCTTTTCTTACCCTTTGTTATCGTTAGCTAATTTCTATG GCTGCTGGTTATTCTAACAAATTAAATTTATTGTTGGACTATGCAGTAATTGGACTGAGATTGATAAAATAAGCAGTGTA TATCAGTTGGGACAGATGGAAAATTCAGTCCGGGAGTCACTTAAGCAAATTCAAACCCATAAGGTATGCATTTCTGATAT AAACTGGATCACTAGAACAATGTAAAGTTCTATTACTGATGACAGTCCCTGAATCCCGAATGGGCAGGGCACAAGAATTA GTCTCTGGATTTTTGAGAGAACCATTTCTCTCCCTAGAGCTCCCAGTCTCGAAAATTTGCTACCTACCATGAGTACCCTA TCCCTTTTTATACTCTATTAAGATATAACTCACTAACCCATTCCCACTTTAGTTTAGTTAACTACTATTACAATAACAAA CTCTATCAGCCATAACTATCACTGTCCTATTCCTATCAATTACACTATCCTGTACTTGATCTTCTTTGCAAAGGATAATG TTTATATGGTTCAGTTTCGCATCACAGATCTGAAGGTAGTTGATTATTTTTTTATGATCCATACTAGAAAATTTTTTCGT CATATTGGGATCTTATATTCAAGATGTTAAATTATTTGATGAAAGTAGATATGCAAAAGGGCATTCCTAACTCCATGATG TTTGTGGATGATATAGTTATAATTGAAAAAGTATGGATAGCGATTAATTCTAAACTTGAGGTTTGGAGAAAGACTAAGGA ATCTGTGGGGTTTCACTTAAGAAGGAGTAAGACAGACTATATGCATTGATGTTTGAAGTAATTTGGAAGTAATGATTGGA AAGACATCATACCACATGTTTTATAGTTTAAGGACCTGAGATATATGATACAAAATAATGGGAAAATTGACAAAGATGTT ACTTACAGAATTCAAGCTGGGTGGTTAAAGTGGAGAAAAACATCAGGAGCTATCTGTGACTACAAAATACTACCAATCTC AAAGGAAATTTTTGTCGAACCTCTATAAGACCTGCTATTGTCTATGGTCGTGAATGTTGAGCTTTAACAGGACGATATGG GGAAGTTTGTGATTAGGAAAAATGAAAATATTAAGATGGATGAGTCATCACACAAGAAAGCCTAAAATACGTAGTTATCA TATCGCAGGGAATATTGGTGTGGCATTTAGTGAGGGGAAGATGGCGAAAAAATCGGTTAAGGTTATTCGGACAAGGACAA AATACCCAATGATCATGTCAGAGGAGATATTGGTGAGGCATTTTGATAGGTACACGTGGTTTGCTAGTTAGTATTAAGTT TTATTATTAGTACCTTTTATCCAGTTAGCATTAGATTTTATATTATATTTTATTAGGTTTAGCATAATTGGAGAGTGAGT ATAAATAAGTGAGTTAGAGAGACTATTGAGTGTCTTTGTATTCACTTTGGAAATTAGGGTTTAGAGCGTTGGGTCTCTCT TAGGGTTTTGGGAGGGTGTTTGGTATCTCTTCCTGGATCTTCTCTGATTCCCAAATTGGGAATTAGGGTTCTATCATAGA AATAATATCAGTTCTTGGACGAGTTCTATGACATTTATTGAAGGAAAGATGCCGGAAATTGGTTACGGTGTTTCAGACAA GTACAAAGAAGACATTGGAAGTCACTAGTGAGACGGGTTGATAACATGGTTCGTAGTCTTGAGAAAAAGGGTAGAAAGGG GCCAAAAAGGACGTTGGAAGATGTAATTAAAATTTAAATGCCACCTTGTGGCCAATAATGTTCTACAAAATCTGGTTTTT GATCGAGCGTAATGCCGTCAAGTGATCCATATAGCCAACCTCATCTAGTGGGATAAGGACTTATTTGCTGTTGTTGTGGT GGTGGTTGTCGTTGTATTTGCTAAAAGGATCTGATATTCTTGCTAGATTATAGTTTGTGTCAAAGGAATCAGGGAAGGTA TACAATGCAAACCCTGATAGTTGTCAATGAAGCATGCATCGCAGTTTTAATAATGATAAGGAAAAACAGCTACTCAATTG TTAAGGAGTAGACTGGAAAAAGAAGCAGCATAAATACAGTTCAATTCACTGCCCTCCAATAATGCATCATTTAAGGTGTT TGACAGTTGACACTATTTTATGTCTAAAATCTGACTGATGTGGCAGGAAAATATAAAAAAGCAACAACAACTGGTGACCC TACAATGCAATAGCCAGGTAAAGAATTGTTTAGTTTGTAACTAACTTTCTCTTGTAAAATTTGTTTCTATTGTATTCACT AAAGAGTTGTGACTAATATCTTTACCTTCCAGTTCAATGAAATGAGTAATCCCTTCAGAATGAGTGTAGACCAGCATCTC CAACCTCTCTCGTGGATTGCTAATGGAGACAGCCAAAATATAGTTTTACCCGAGGACTCAAACTTGTTTCTCTACAAGTG AGTTATTTATCTAAAGTAGAAATATATTCAATGCTTCAATACTTGTTCTTCCACAATCTTCTCAGTCTGCATAACCTGTT TCATTGCAATGCAAGGATGTATCATTGAAGAATGTTTGATTGAAATGATTAGCAACCAACATTTTCTCTTCTAGACATGG CAATGTTTTATAGATACTGAATTGATATTTTTTAGTTAAACATTTGTAACACCATTTATTTGGATATTTCTCAGAGATGT AGAGGGATCTGCAAGTTCATCATTTGGGAGTTATGCGAGTTATCTCGGCTCAAGTAGCAAACTTGAGATTTCTACCTCCG GGCAAGAAAATTGTGTCCTCATTGACATGAGTAGTACTGCTCCTCTTAGACTACAATTGAGTGGGCAGATTCCGTACCTG CCTTACAATTTCAATTTATTGAATAATTTGAAGTTGCAACCAACTGCAGCAGAGATCAACCCGCATAAAAACCCTGTAGA TTATCATGTGGATGGAAGCTTTGAAGACCCTAGACCTGGTTATGATTCTAACCAGCATGGATGGGCTTCTACATCAGGGC CTTGTGCTGTTACTATGTTTGATGAGCATTTGTACGCCCAGGCAAGTTTCAATAAAGTGCATTTTGGCTTCACGTAGCAC CCCACCTTTATTATTTTCTTTTTTTCTTTTTCTGCTATTCCTGTTGAGTGACTTCCTTGTGTATAGCTGCCCTTTCTGAT ACCCTAACACTAGTCACTTATGAGAGAGAGAGAGAGAGAGAGAAAGAAATTGTAATGCTTCCCATTCCCAAGATAAAAAA GGCTTTCTTGTTTTATAGCTTTCCATTAGACTATTGTGGAGCATTTACCTCACAAGTTTGAGGTTTTGTAATATTCAAGT CTACATGGAGTAATACGCAATGCAAAATGTTTTTTCTAAACAGTGGAATAGTTAGTAAACTTCCCTCTCCCTTCTATTCT CATGTCAAAGGCTAAGACTATTTGTACCATCCCCCTTTACTATCCACACCATCCCCTTTTTTTTAATCCCAAAAATAACC CCAACATAGAAAACATACAAAGTAGTAAAGAAAATACTCTCCCAACCTCACATTCTTCTTCCTTCTTCCTCTTCCACTCT CATCTTCCCCCATCCCTATTTCATCTTCTAAACACATCACACACCTTAGAGGTATTTGAAGCTCCAAATCAGTGTAGAAG ATAAGTGGGTGAGATCAAGAGAAAAATAGAAGCTCAAAATAGGTGAGATTTTGGGATTTTTACGGTTTTTTCGCGTAAAT CTGGGTAGAATATGTGGGTTCTGGTTCGTTCCGCCATTTAAACTGCGGACGTTTTATTGCTACCGCTATCTTAGTAGCGG TAACTTCCGCTATCTTAAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0187500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCAGGGTAAAGCTAAAGATAAAGAGGCTTGAGAACACCAATGGCCGCCAGGCAACATATGCTAAAAGGAAAAATGG AATCATAAAAAAAGCATCTGAGTTATCTATACTATGTGATATAGATATTATACTTCTCATGTTCTCACCAAGTGGAAAGC CTTCGATATGCAGGGGGAGGCACAGCAACTTAGAGGAAGTTATTGCAAAGTTCGCTCAACTAACTCCACAGGAAAGGGCA AAAAGGAAGTTGGAGAGCCTCGAAGCACTGAAGAAAACCTTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTAT GGGTACAAGTAGTCAAAGAATTGAGGATGTAAGTAATCATGCCAGGTTATTACAGAATCAAATTTCTGAAATCCAAAAGA GATTAAGTAATTGGACTGAGATTGATAAAATAAGCAGTGTATATCAGTTGGGACAGATGGAAAATTCAGTCCGGGAGTCA CTTAAGCAAATTCAAACCCATAAGGAAAATATAAAAAAGCAACAACAACTGGTGACCCTACAATGCAATAGCCAGTTCAA TGAAATGAGTAATCCCTTCAGAATGAGTGTAGACCAGCATCTCCAACCTCTCTCGTGGATTGCTAATGGAGACAGCCAAA ATATAGTTTTACCCGAGGACTCAAACTTGTTTCTCTACAAAGATGTAGAGGGATCTGCAAGTTCATCATTTGGGAGTTAT GCGAGTTATCTCGGCTCAAGTAGCAAACTTGAGATTTCTACCTCCGGGCAAGAAAATTGTGTCCTCATTGACATGAGTAG TACTGCTCCTCTTAGACTACAATTGAGTGGGCAGATTCCGTACCTGCCTTACAATTTCAATTTATTGAATAATTTGAAGT TGCAACCAACTGCAGCAGAGATCAACCCGCATAAAAACCCTGTAGATTATCATGTGGATGGAAGCTTTGAAGACCCTAGA CCTGGTTATGATTCTAACCAGCATGGATGGGCTTCTACATCAGGGCCTTGTGCTGTTACTATGTTTGATGAGCATTTGTA CGCCCAGGCAAGTTTCAATAAAGTGCATTTTGGCTTCACGTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0187500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRVKLKIKRLENTNGRQATYAKRKNGIIKKASELSILCDIDIILLMFSPSGKPSICRGRHSNLEEVIAKFAQLTPQERA KRKLESLEALKKTFKKLDHDVNIQEFMGTSSQRIEDVSNHARLLQNQISEIQKRLSNWTEIDKISSVYQLGQMENSVRES LKQIQTHKENIKKQQQLVTLQCNSQFNEMSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGSY ASYLGSSSKLEISTSGQENCVLIDMSSTAPLRLQLSGQIPYLPYNFNLLNNLKLQPTAAEINPHKNPVDYHVDGSFEDPR PGYDSNQHGWASTSGPCAVTMFDEHLYAQASFNKVHFGFT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00432
1 60 60 7.8E-28
IPR002100
ProSiteProfiles
PS50066
1 53 53 23.843
IPR002100
PANTHER
PTHR11945:SF519
2 345 344 3.2E-106 –
CDD
cd00120
2 54 53 4.82346E-25 –
PANTHER
PTHR11945
2 345 344 3.2E-106 –
SUPERFAMILY
SSF55455
2 95 94 1.44E-24
IPR036879
PRINTS
PR00404
3 23 21 6.7E-17
IPR002100
Pfam
PF00319
11 54 44 3.4E-18
IPR002100
Gene3D
G3DSA:3.40.1810.10
13 95 83 1.3E-21
IPR036879
PRINTS
PR00404
23 38 16 6.7E-17
IPR002100
PRINTS
PR00404
38 59 22 6.7E-17
IPR002100
Coils
Coil
77 97 21 - –
Coils
Coil
114 141 28 - –
Coils
Coil
150 177 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0187500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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