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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0188500 |
| Transcript ID | LotjaGi4g1v0188500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SAUR-like auxin-responsive protein family; TAIR: AT2G35290.1 hypothetical protein; Swiss-Prot: sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590, mitochondrial; TrEMBL-Plants: tr|I3SHT5|I3SHT5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0188500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:42925171..42926087) extracted from Lotus japonicus Gifu genome v1.2.
CGCTTTACCCATATGAATATATATAGTAACAAATGCATCTAGCTACCTACATATAAATTTCTATTTCAAGCCCCATTAAA CTGATCTACAATCACCTCCTCACATACCAATACTACTATCATCTACAGTGTTCTTGTATATCTACCTTGGATCTTTCTCC ATGAATTGCTTGGTCTTGCCGGTATCATTGATCCGAAGACGCTCCACACGGTATCACCCCTTAACCAAAGATCATGAAGA TAAGTTGGACAAAGAATTAGCATCCCACAACGCTGTGATGGTGGTGGTGGGAAGAGAAAAGAGGGTGTTCCTCGTGGACC CTTTCATACTACAAGAGAATCCATTTCGGCTTTTGATGGATCACACCTCCATGAAGATGGATCAAGGGGATGAAGAGAAT CATCATCATCTCGGTTTCTCAACAAAACAACATGGAGTGGTCTTTATTGATGTTGATGCCATTTTGTTCGAGCACATGTT GTGGCTTGTGCATAATGATTACTCTTCTTTGTGCAAACTCAATTTGAAGGAGATTATTGACTTCTATGCTCAGGATATAT AACCCCAGCATCTTGTCTTGTCTAGCAAACATATTTCTAAACTCTGTGAATTATGCGGAGAAGTTTCAATAAGTAGTTTT GTAATTTTATAATTAATTACAAGGAAATAAAAGCTGATTGTTATCAATTGAGATTTAATTAATAGAGTTTTCTCTTTCTT TCCGTGTGGCATTAAGAAGAAACATCTAAGGGAGTTTGGTAGAAGGTATTCAAAATCATTCCCGGGACTGAGAAAGTATG TATGAGAATGTTGTACTCCCGTACTTGGTAGAAGTTTTGTAAAAATATTCCCGAACATAATTTATTTCCAATAAAGTTCA TTACACACATTTTGTCTCATTTCTATTTCAAAGATAA
CDS sequence (LotjaGi4g1v0188500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTGCTTGGTCTTGCCGGTATCATTGATCCGAAGACGCTCCACACGGTATCACCCCTTAACCAAAGATCATGAAGA TAAGTTGGACAAAGAATTAGCATCCCACAACGCTGTGATGGTGGTGGTGGGAAGAGAAAAGAGGGTGTTCCTCGTGGACC CTTTCATACTACAAGAGAATCCATTTCGGCTTTTGATGGATCACACCTCCATGAAGATGGATCAAGGGGATGAAGAGAAT CATCATCATCTCGGTTTCTCAACAAAACAACATGGAGTGGTCTTTATTGATGTTGATGCCATTTTGTTCGAGCACATGTT GTGGCTTGTGCATAATGATTACTCTTCTTTGTGCAAACTCAATTTGAAGGAGATTATTGACTTCTATGCTCAGGATATAT AA
Protein sequence (LotjaGi4g1v0188500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNCLVLPVSLIRRRSTRYHPLTKDHEDKLDKELASHNAVMVVVGREKRVFLVDPFILQENPFRLLMDHTSMKMDQGDEEN HHHLGFSTKQHGVVFIDVDAILFEHMLWLVHNDYSSLCKLNLKEIIDFYAQDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 132 | 132 | 2.8E-39 | – | |
| PANTHER | 1 | 132 | 132 | 2.8E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0188500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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